Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0017615 Lotus japonicus HOM05D004269 ORTHO05D007106 2.4e-254 881.7 461 100.0
Glyma.13G131900 Glycine max HOM05D004269 ORTHO05D007106 3.1e-225 785.0 468 88.5
Ca_09614_v3 Cicer arietinum L. HOM05D004269 ORTHO05D007106 6.9e-225 783.9 470 88.7
Medtr1g068845 Medicago truncatula HOM05D004269 ORTHO05D007106 5.8e-224 780.8 473 87.9
Glyma.10G044300 Glycine max HOM05D004269 ORTHO05D007106 1.3e-223 779.6 466 88.8
Psat6g067760 Pisum sativum HOM05D004269 ORTHO05D007106 1.3e-220 769.6 470 87.2
Lalb_Chr06g0171031 Lupinus albus HOM05D004269 ORTHO05D007106 8.7e-220 766.9 474 85.9
Phvul.007G158000 Phaseolus vulgaris HOM05D004269 ORTHO05D007106 2.8e-218 761.9 468 87.0
arahy.Tifrunner.gnm1.ann1.FJP50F Arachis hypogaea HOM05D004269 ORTHO05D007106 7.6e-216 753.8 473 84.4
arahy.Tifrunner.gnm1.ann1.5YT5MY Arachis hypogaea HOM05D004269 ORTHO05D007106 2.3e-212 742.3 438 88.4
Atru.chr8.1955 Acer truncatum HOM05D004269 ORTHO05D007106 3.7e-202 708.4 472 80.1
Lj2C99G10 Lonicera japonica HOM05D004269 ORTHO05D007106 1.9e-198 696.0 432 83.8
QL07p047335 Quercus lobata HOM05D004269 ORTHO05D007106 2.5e-198 695.7 460 80.9
Potri.012G115900 Populus trichocarpa HOM05D004269 ORTHO05D007106 3.2e-198 695.3 453 80.6
CANSAT56G4185 Cannabis sativa HOM05D004269 ORTHO05D007106 3.6e-197 691.8 463 78.2
Ciclev10011653m.g Citrus clementina HOM05D004269 ORTHO05D007106 2.3e-196 689.1 472 77.1
QL09p012946 Quercus lobata HOM05D004269 ORTHO05D007106 2.3e-196 689.1 443 82.2
QL05p010548 Quercus lobata HOM05D004269 ORTHO05D007106 3.9e-196 688.3 425 85.2
Prupe.6G250400 Prunus persica HOM05D004269 ORTHO05D007106 5.1e-196 688.0 467 78.8
RcHm_v2.0_Chr3g0467271 Rosa chinensis HOM05D004269 ORTHO05D007106 1.5e-195 686.4 465 77.8
Eucgr.K03158 Eucalyptus grandis HOM05D004269 ORTHO05D007106 2.0e-195 686.0 428 82.0
Dinv35635 Davidia involucrata HOM05D004269 ORTHO05D007106 2.5e-195 685.6 434 81.6
PSO206G0015 Papaver somniferum HOM05D004269 ORTHO05D007106 2.5e-195 685.6 472 76.9
TAR369G0704 Trochodendron aralioides HOM05D004269 ORTHO05D007106 3.3e-195 685.3 429 82.8
GSVIVG01025529001 Vitis vinifera HOM05D004269 ORTHO05D007106 7.4e-195 684.1 438 81.7
Cfa017428 Carpinus fangiana HOM05D004269 ORTHO05D007106 1.7e-194 682.9 458 79.9
MD04G1121900 Malus domestica HOM05D004269 ORTHO05D007106 2.8e-194 682.2 426 83.8
FvH4_6g14300 Fragaria vesca HOM05D004269 ORTHO05D007106 4.8e-194 681.4 463 78.0
MD12G1138500 Malus domestica HOM05D004269 ORTHO05D007106 1.8e-193 679.5 426 83.3
CSS0004421 Camellia sinensis var. sinensis HOM05D004269 ORTHO05D007106 6.9e-193 677.6 434 80.2
PSO339G5566 Papaver somniferum HOM05D004269 ORTHO05D007106 9.1e-193 677.2 498 73.3
ECA238G4253 Erigeron canadensis HOM05D004269 ORTHO05D007106 1.2e-192 676.8 445 77.8
HanXRQChr14g0453741 Helianthus annuus HOM05D004269 ORTHO05D007106 1.2e-192 676.8 452 76.1
Haze_20743 Corylus avellana HOM05D004269 ORTHO05D007106 2.6e-192 675.6 444 80.6
TWI74G1158 Tripterygium wilfordii HOM05D004269 ORTHO05D007106 2.6e-192 675.6 429 81.6
PGSC0003DMG400008852 Solanum tuberosum HOM05D004269 ORTHO05D007106 5.9e-192 674.5 441 79.6
Solyc09g010420.4 Solanum lycopersicum HOM05D004269 ORTHO05D007106 7.7e-192 674.1 441 79.8
Cpa.g.sc11.168 Carica papaya HOM05D004269 ORTHO05D007106 1.3e-191 673.3 429 80.7
Peaxi162Scf00039g01234 Petunia axillaris HOM05D004269 ORTHO05D007106 1.7e-191 672.9 439 79.0
PGR044G1633 Punica granatum HOM05D004269 ORTHO05D007106 1.4e-190 669.8 449 78.0
Sopen09g005160 Solanum pennellii HOM05D004269 ORTHO05D007106 1.4e-190 669.8 441 79.1
CiPaw.09G188900 Carya illinoinensis HOM05D004269 ORTHO05D007106 2.5e-190 669.1 439 80.6
CsaV3_3G035070 Cucumis sativus L. HOM05D004269 ORTHO05D007106 9.4e-190 667.2 459 76.9
arahy.Tifrunner.gnm1.ann1.L55DKK Arachis hypogaea HOM05D004269 ORTHO05D007106 1.2e-189 666.8 422 84.6
TPR.G11806 Trifolium pratense HOM05D004269 ORTHO05D007106 1.2e-189 666.8 422 86.0
FAN14G0717 Fragaria x ananassa HOM05D004269 ORTHO05D007106 2.1e-189 666.0 439 79.5
MSTRG.19100 Avicennia marina HOM05D004269 ORTHO05D007106 4.7e-189 664.8 469 74.6
MELO3C009277.2 Cucumis melo HOM05D004269 ORTHO05D007106 6.1e-189 664.5 432 79.4
MBI14_g24308_MAGBIO Magnolia biondii HOM05D004269 ORTHO05D007106 7.9e-189 664.1 424 80.9
Hund02377 Selenicereus undatus HOM05D004269 ORTHO05D007106 1.4e-188 663.3 446 77.1
Sabra12G0084000 Salix brachista HOM05D004269 ORTHO05D007106 1.8e-188 662.9 471 76.6
FAN02G4217 Fragaria x ananassa HOM05D004269 ORTHO05D007106 2.3e-188 662.5 463 75.6
Aqoxy2G02034 Aquilegia oxysepala HOM05D004269 ORTHO05D007106 6.7e-188 661.0 429 79.7
Sed0027746 Sechium edule HOM05D004269 ORTHO05D007106 6.7e-188 661.0 432 79.6
THA.LOC104815237 Tarenaya hassleriana HOM05D004269 ORTHO05D007106 8.8e-188 660.6 449 77.3
Thecc.05G044300 Theobroma cacao HOM05D004269 ORTHO05D007106 1.5e-187 659.8 472 74.8
ClCG10G020940 Citrullus lanatus HOM05D004269 ORTHO05D007106 4.4e-187 658.3 457 76.1
AUR62031166 Chenopodium quinoa HOM05D004269 ORTHO05D007106 4.8e-186 654.8 426 79.6
AUR62036580 Chenopodium quinoa HOM05D004269 ORTHO05D007106 4.8e-186 654.8 424 80.0
Carub.0004s1942 Capsella rubella HOM05D004269 ORTHO05D007106 8.2e-186 654.1 469 74.6
Cc06_g02960 Coffea canephora HOM05D004269 ORTHO05D007106 1.4e-185 653.3 439 77.9
BcaB02g09282 Brassica carinata HOM05D004269 ORTHO05D007106 3.1e-185 652.1 460 75.4
BcaC02g11857 Brassica carinata HOM05D004269 ORTHO05D007106 3.1e-185 652.1 464 73.9
BraA05t19815Z Brassica rapa HOM05D004269 ORTHO05D007106 3.1e-185 652.1 463 74.9
BolC4t28100H Brassica oleracea HOM05D004269 ORTHO05D007106 4.1e-185 651.7 463 74.9
AL4G33990 Arabidopsis lyrata HOM05D004269 ORTHO05D007106 5.3e-185 651.4 469 74.4
A05p08460 Brassica napus HOM05D004269 ORTHO05D007106 9.1e-185 650.6 463 74.5
CARHR132110 Cardamine hirsuta HOM05D004269 ORTHO05D007106 2.0e-184 649.4 476 72.9
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 2.0e-184 649.4 423 78.7
DCAR_009253 Daucus carota HOM05D004269 ORTHO05D007106 2.0e-184 649.4 423 80.1
Lsat_1_v5_gn_2_110500 Lactuca sativa HOM05D004269 ORTHO05D007106 2.6e-184 649.0 438 76.0
Gohir.D09G153600 Gossypium hirsutum HOM05D004269 ORTHO05D007106 3.5e-184 648.7 474 73.6
C04p10550 Brassica napus HOM05D004269 ORTHO05D007106 5.9e-184 647.9 464 73.9
Sp4g19820 Schrenkiella parvula HOM05D004269 ORTHO05D007106 5.9e-184 647.9 462 74.7
Aa31LG5G19670 Aethionema arabicum HOM05D004269 ORTHO05D007106 7.7e-184 647.5 439 76.5
Gorai.006G175100 Gossypium raimondii HOM05D004269 ORTHO05D007106 7.7e-184 647.5 474 73.4
BolC4t22646H Brassica oleracea HOM05D004269 ORTHO05D007106 1.0e-183 647.1 466 73.6
Gohir.A09G158200 Gossypium hirsutum HOM05D004269 ORTHO05D007106 1.0e-183 647.1 479 72.9
BraA04t18341Z Brassica rapa HOM05D004269 ORTHO05D007106 1.3e-183 646.7 434 77.9
A04p28640 Brassica napus HOM05D004269 ORTHO05D007106 1.7e-183 646.4 434 77.9
CAN.G97.19 Capsicum annuum HOM05D004269 ORTHO05D007106 3.8e-183 645.2 428 78.5
BcaB06g28999 Brassica carinata HOM05D004269 ORTHO05D007106 1.5e-182 643.3 434 77.2
EL10Ac8g18791 Beta vulgaris HOM05D004269 ORTHO05D007106 5.5e-182 641.3 438 75.6
Thhalv10016608m.g Eutrema salsugineum HOM05D004269 ORTHO05D007106 9.4e-182 640.6 428 78.7
Nn2g10437 Nelumbo nucifera HOM05D004269 ORTHO05D007106 1.5e-179 633.3 420 79.5
ATR0559G147 Amborella trichopoda HOM05D004269 ORTHO05D007106 2.6e-179 632.5 437 75.7
C04p65960 Brassica napus HOM05D004269 ORTHO05D007106 5.7e-179 631.3 449 75.1
Nitab4.5_0002077g0090 Nicotiana tabacum HOM05D004269 ORTHO05D007106 9.7e-179 630.6 409 80.0
Manes.09G086800 Manihot esculenta HOM05D004269 ORTHO05D007106 1.3e-178 630.2 399 83.0
vmacro08669 Vaccinium macrocarpon HOM05D004269 ORTHO05D007106 1.1e-177 627.1 447 74.0
SGA_v2.0_scaffold75G24934 Striga asiatica HOM05D004269 ORTHO05D007106 1.8e-177 626.3 488 69.5
AT2G37500 Arabidopsis thaliana HOM05D004269 ORTHO05D007106 2.4e-177 625.9 406 80.5
Migut.J00361 Erythranthe guttata HOM05D004269 ORTHO05D007106 2.2e-175 619.4 441 74.4
Duzib128G0641 Durio zibethinus HOM05D004269 ORTHO05D007106 8.5e-175 617.5 429 75.5
Os03g0279400 Oryza sativa ssp. japonica HOM05D004269 ORTHO05D007106 4.2e-174 615.1 424 74.3
SalBow3G0454 Salvia bowleyana HOM05D004269 ORTHO05D007106 1.6e-173 613.2 505 67.3
Mapoly0082s0028 Marchantia polymorpha HOM05D004269 ORTHO05D007106 1.8e-169 599.7 428 72.7
Sc20g0004610 Simmondsia chinensis HOM05D004269 ORTHO05D007106 1.0e-167 594.0 385 81.6
Pp3c9_2270 Physcomitrium patens HOM05D004269 ORTHO05D007106 1.6e-165 586.6 427 71.4
TAR623G0301 Trochodendron aralioides HOM05D004269 ORTHO05D007106 3.0e-164 582.4 406 76.8
unitig_578.g15701 Utricularia gibba HOM05D004269 ORTHO05D007106 5.9e-160 568.2 439 67.9
Nitab4.5_0009149g0030 Nicotiana tabacum HOM05D004269 ORTHO05D007106 3.8e-159 565.5 409 73.1
SMO347G0094 Selaginella moellendorffii HOM05D004269 ORTHO05D007106 3.4e-155 552.4 438 67.1
TAR623G0331 Trochodendron aralioides HOM05D004269 ORTHO05D007106 1.7e-154 550.1 388 77.1
HPP92_001489 Vanilla planifolia HOM05D004269 ORTHO05D007106 1.7e-154 550.1 385 72.5
VMungo0720G1352 Vigna mungo HOM05D004269 ORTHO05D007106 2.5e-142 509.6 323 85.4
Dinv37204 Davidia involucrata HOM05D004269 ORTHO05D007106 3.9e-135 485.7 341 78.0
Actinidia05298 Actinidia chinensis HOM05D004269 ORTHO05D007106 5.1e-135 485.3 476 60.3
Cre16.g694850 Chlamydomonas reinhardtii HOM05D004269 ORTHO05D007106 1.6e-133 480.3 435 60.2
AagrBONN_evm.TU.Sc2ySwM_228.5429 Anthoceros agrestis HOM05D004269 ORTHO05D007106 3.5e-128 462.6 360 67.8
EL10Ac7g17097 Beta vulgaris HOM05D004269 ORTHO05D007106 2.3e-127 459.9 388 67.3
Zm00001eb012670 Zea mays HOM05D004269 ORTHO05D007106 1.6e-125 453.8 329 70.2
PRCOL_00001324 Prasinoderma coloniale HOM05D004269 ORTHO05D007106 1.4e-124 450.7 437 59.0
MCO14G482 Micromonas commoda HOM05D004269 ORTHO05D007106 8.1e-117 424.9 434 56.0
Hma1.2p1_1535F.1_g289500 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 1.3e-106 391.0 239 85.8
SHI29092 Sapria himalayana HOM05D004269 ORTHO05D007106 4.3e-102 375.9 388 57.5
Actinidia13128 Actinidia chinensis HOM05D004269 ORTHO05D007106 1.1e-81 308.1 243 70.0
Rhsim04G0153900 Rhododendron simsii HOM05D004269 ORTHO05D007106 7.9e-80 302.0 194 80.9
Actinidia13127 Actinidia chinensis HOM05D004269 ORTHO05D007106 2.4e-76 290.4 202 74.8
Hma1.2p1_1535F.1_g289480 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 3.4e-75 286.6 195 75.4
VMungo0720G1280 Vigna mungo HOM05D004269 ORTHO05D007106 1.7e-69 267.7 147 90.5
Hma1.2p1_1004F.1_g246860 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 1.4e-68 264.6 204 68.1
CBR_g37471 Chara braunii HOM05D004269 ORTHO05D007106 2.2e-66 257.3 218 61.0
Hma1.2p1_1004F.1_g246850 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 1.0e-63 248.4 182 75.8
Cfa024613 Carpinus fangiana HOM05D004269 ORTHO05D007106 1.1e-49 201.8 458 35.2
SEGI_16124 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 6.1e-48 196.1 124 76.6
SEGI_30751 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 5.4e-36 156.4 140 64.3
SEGI_32622 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 7.0e-36 156.0 137 65.0
Lsat_1_v5_gn_4_171201 Lactuca sativa HOM05D004269 ORTHO05D000661 3.1e-31 140.6 264 38.3
Potri.015G112400 Populus trichocarpa HOM05D004269 ORTHO05D007106 5.2e-31 139.8 103 70.9
Cc02_g24250 Coffea canephora HOM05D004269 ORTHO05D007106 6.8e-31 139.4 102 68.6
Lsat_1_v5_gn_7_20760 Lactuca sativa HOM05D004269 ORTHO05D020149 1.3e-29 135.2 158 54.4
Lsat_1_v5_gn_6_110780 Lactuca sativa HOM05D004269 ORTHO05D000661 1.9e-28 131.3 264 36.4
QL09p013305 Quercus lobata HOM05D004269 ORTHO05D010618 2.4e-28 131.0 101 70.3
SEGI_12229 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 2.0e-27 127.9 147 51.0
Cfa017427 Carpinus fangiana HOM05D004269 ORTHO05D021565 2.3e-23 114.4 103 61.2
Lsat_1_v5_gn_1_18180 Lactuca sativa HOM05D000819 ORTHO05D000661 3.9e-18 97.1 121 51.2
SalBow6G0271 Salvia bowleyana HOM05D004269 ORTHO05D000571 1.5e-17 95.1 87 57.5
Lsat_1_v5_gn_1_104560 Lactuca sativa HOM05D001098 ORTHO05D003515 3.4e-14 84.0 46 78.3
Lsat_1_v5_gn_9_124300 Lactuca sativa HOM05D001098 ORTHO05D003515 3.4e-14 84.0 46 78.3
C02p59220 Brassica napus HOM05D004269 ORTHO05D013520 4.9e-13 80.1 76 59.2
ECA236G0058 Erigeron canadensis HOM05D000039 ORTHO05D000370 6.4e-13 79.7 64 67.2
AUR62004247 Chenopodium quinoa HOM05D004269 ORTHO05D021565 2.4e-12 77.8 45 77.8
Glyma.18G131800 Glycine max HOM05D004269 ORTHO05D213362 4.1e-12 77.0 109 46.8
AUR62035732 Chenopodium quinoa HOM05D004269 ORTHO05D021565 5.4e-12 76.6 73 52.1
BcaB08g34435 Brassica carinata HOM05D004269 ORTHO05D000659 7.1e-12 76.3 59 57.6
BcaC01g04800 Brassica carinata HOM05D004269 ORTHO05D013520 7.1e-12 76.3 64 65.6
BcaC05g28037 Brassica carinata HOM05D004269 ORTHO05D013520 2.1e-11 74.7 64 64.1
BcaC06g34343 Brassica carinata HOM05D004269 ORTHO05D013520 2.1e-11 74.7 80 56.2
C01p38510 Brassica napus HOM05D004269 ORTHO05D013520 2.1e-11 74.7 64 64.1
C02p38620 Brassica napus HOM05D004269 ORTHO05D013520 2.1e-11 74.7 64 64.1
C04p14230 Brassica napus HOM05D004269 ORTHO05D013520 2.1e-11 74.7 64 64.1
C07p30140 Brassica napus HOM05D004269 ORTHO05D013520 2.1e-11 74.7 64 64.1
BolC5t30237H Brassica oleracea HOM05D004269 ORTHO05D013520 2.1e-11 74.7 64 64.1
BolC5t33714H Brassica oleracea HOM05D004269 ORTHO05D013520 2.1e-11 74.7 64 64.1
C05p40550 Brassica napus HOM05D004269 ORTHO05D013520 2.7e-11 74.3 63 65.1
Sabra15G0134100 Salix brachista HOM05D004269 ORTHO05D007106 2.7e-11 74.3 89 52.8
C05p46330 Brassica napus HOM05D004269 ORTHO05D013520 3.5e-11 73.9 64 62.5
BolC5t33363H Brassica oleracea HOM05D004269 ORTHO05D013520 3.5e-11 73.9 64 64.1
COL.COLO4_35964 Corchorus olitorius HOM05D001211 ORTHO05D001084 3.5e-11 73.9 76 53.9
Lsat_1_v5_gn_3_125120 Lactuca sativa HOM05D004623 ORTHO05D005100 6.6e-10 69.7 178 30.3
Lsat_1_v5_gn_7_15681 Lactuca sativa HOM05D004269 ORTHO05D007106 6.6e-10 69.7 166 33.1
BolC6t36588H Brassica oleracea HOM05D004269 ORTHO05D013520 4.3e-09 67.0 66 60.6
CARHR249580 Cardamine hirsuta HOM05D004269 ORTHO05D021565 2.4e-07 61.2 47 68.1
CAN.G1327.6 Capsicum annuum HOM05D004269 ORTHO05D007861 4.0e-07 60.5 48 68.8
BcaC04g20716 Brassica carinata HOM05D004269 ORTHO05D013520 1.5e-06 58.5 43 69.8
BcaC07g37638 Brassica carinata HOM05D004269 ORTHO05D016737 1.5e-06 58.5 39 74.4


User provided reference genes

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