Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0017261 Lotus japonicus HOM05D007166 ORTHO05D009039 1.9e-91 339.3 195 100.0
Lalb_Chr22g0354371 Lupinus albus HOM05D007166 ORTHO05D009039 1.6e-58 229.9 195 73.3
Glyma.14G218200 Glycine max HOM05D007166 ORTHO05D009039 9.2e-54 214.2 193 68.9
Phvul.001G007500 Phaseolus vulgaris HOM05D007166 ORTHO05D009039 1.6e-53 213.4 195 68.7
VMungo0647G2551 Vigna mungo HOM05D007166 ORTHO05D009039 2.0e-53 213.0 195 69.2
Medtr1g024840 Medicago truncatula HOM05D007166 ORTHO05D009039 4.3e-51 205.3 196 68.4
TPR.G34359 Trifolium pratense HOM05D007166 ORTHO05D009039 6.8e-49 198.0 197 66.0
Glyma.17G257400 Glycine max HOM05D007166 ORTHO05D009039 2.6e-48 196.1 193 66.8
QL02p011380 Quercus lobata HOM05D007166 ORTHO05D009039 4.9e-47 191.8 199 64.3
CANSAT25G3739 Cannabis sativa HOM05D007166 ORTHO05D009039 4.1e-46 188.7 206 62.6
FAN15G1492 Fragaria x ananassa HOM05D007166 ORTHO05D009039 4.1e-46 188.7 199 64.8
Potri.002G023600 Populus trichocarpa HOM05D007166 ORTHO05D009039 5.4e-46 188.3 200 63.0
GSVIVG01009888001 Vitis vinifera HOM05D007166 ORTHO05D009039 9.2e-46 187.6 201 62.7
MELO3C003759.2 Cucumis melo HOM05D007166 ORTHO05D009039 3.5e-45 185.7 198 63.1
CsaV3_3G045770 Cucumis sativus L. HOM05D007166 ORTHO05D009039 1.0e-44 184.1 198 63.1
Haze_22621 Corylus avellana HOM05D007166 ORTHO05D009039 1.7e-44 183.3 200 62.0
Prupe.1G367000 Prunus persica HOM05D007166 ORTHO05D009039 3.0e-44 182.6 201 62.2
Atru.chr13.311 Acer truncatum HOM05D007166 ORTHO05D009039 3.9e-44 182.2 205 59.5
Peaxi162Scf00438g00619 Petunia axillaris HOM05D007166 ORTHO05D009039 6.6e-44 181.4 195 64.1
Cc10_g01790 Coffea canephora HOM05D007166 ORTHO05D009039 4.3e-43 178.7 202 59.9
Potri.005G237800 Populus trichocarpa HOM05D007166 ORTHO05D009039 5.6e-43 178.3 201 59.7
Duzib116G0210 Durio zibethinus HOM05D007166 ORTHO05D009039 1.2e-42 177.2 199 58.8
Sabra02G0019200 Salix brachista HOM05D007166 ORTHO05D009039 1.2e-42 177.2 200 60.0
Sed0018016 Sechium edule HOM05D007166 ORTHO05D009039 1.6e-42 176.8 195 61.5
Dinv31833 Davidia involucrata HOM05D007166 ORTHO05D009039 2.1e-42 176.4 184 63.0
Duzib093G1587 Durio zibethinus HOM05D007166 ORTHO05D009039 3.6e-42 175.6 197 58.4
RcHm_v2.0_Chr6g0302691 Rosa chinensis HOM05D007166 ORTHO05D009039 6.2e-42 174.9 197 59.9
COL.COLO4_26159 Corchorus olitorius HOM05D007166 ORTHO05D009039 8.1e-42 174.5 198 58.1
Lj4A797T62 Lonicera japonica HOM05D007166 ORTHO05D009039 1.8e-41 173.3 198 61.1
Oeu007334.1 Olea europaea HOM05D007166 ORTHO05D009039 2.4e-41 172.9 199 59.3
CAN.G311.15 Capsicum annuum HOM05D007166 ORTHO05D009039 3.1e-41 172.6 196 63.3
ClCG05G018350 Citrullus lanatus HOM05D007166 ORTHO05D009039 5.2e-41 171.8 191 61.3
Gorai.010G005000 Gossypium raimondii HOM05D007166 ORTHO05D009039 5.2e-41 171.8 197 57.4
CiPaw.08G065500 Carya illinoinensis HOM05D007166 ORTHO05D009039 6.8e-41 171.4 201 59.7
Rhsim06G0022200 Rhododendron simsii HOM05D007166 ORTHO05D009039 6.8e-41 171.4 190 60.5
TWI56G1425 Tripterygium wilfordii HOM05D007166 ORTHO05D009039 6.8e-41 171.4 190 61.6
CSS0019896 Camellia sinensis var. sinensis HOM05D007166 ORTHO05D009039 1.2e-40 170.6 199 60.8
Migut.C00807 Erythranthe guttata HOM05D007166 ORTHO05D009039 1.2e-40 170.6 196 59.7
Eucgr.F00601 Eucalyptus grandis HOM05D007166 ORTHO05D009039 1.5e-40 170.2 202 59.9
FAN20G1945 Fragaria x ananassa HOM05D007166 ORTHO05D009039 2.6e-40 169.5 208 57.2
MD15G1013500 Malus domestica HOM05D007166 ORTHO05D009039 3.4e-40 169.1 201 59.7
Gohir.D06G000600 Gossypium hirsutum HOM05D007166 ORTHO05D009039 5.8e-40 168.3 197 56.9
PGR031G2037 Punica granatum HOM05D007166 ORTHO05D009039 5.8e-40 168.3 202 58.9
Sopen04g034940 Solanum pennellii HOM05D007166 ORTHO05D009039 7.6e-40 167.9 200 59.5
Gohir.A06G004800 Gossypium hirsutum HOM05D007166 ORTHO05D009039 9.9e-40 167.5 197 56.3
Thecc.08G042800 Theobroma cacao HOM05D007166 ORTHO05D009039 1.3e-39 167.2 195 56.4
FvH4_2g38630 Fragaria vesca HOM05D007166 ORTHO05D009039 2.9e-39 166.0 190 59.5
Solyc04g081320.4 Solanum lycopersicum HOM05D007166 ORTHO05D009039 4.9e-39 165.2 200 59.0
AT1G75690 Arabidopsis thaliana HOM05D007166 ORTHO05D009039 1.4e-38 163.7 189 60.8
Nn5g29333 Nelumbo nucifera HOM05D007166 ORTHO05D009039 1.4e-38 163.7 193 58.0
Actinidia15414 Actinidia chinensis HOM05D007166 ORTHO05D009039 4.1e-38 162.2 182 61.0
arahy.Tifrunner.gnm1.ann1.74SAHL Arachis hypogaea HOM05D007166 ORTHO05D009039 6.0e-37 158.3 191 62.8
PSO170G1901 Papaver somniferum HOM05D007166 ORTHO05D009039 7.8e-37 157.9 185 60.0
BcaC08g47053 Brassica carinata HOM05D007166 ORTHO05D009039 1.0e-36 157.5 191 58.6
SGA_v2.0_scaffold92G28245 Striga asiatica HOM05D007166 ORTHO05D009039 1.0e-36 157.5 190 57.9
unitig_46.g17964 Utricularia gibba HOM05D007166 ORTHO05D009039 1.0e-36 157.5 159 64.8
Sp5g30800 Schrenkiella parvula HOM05D007166 ORTHO05D009039 1.3e-36 157.1 193 58.0
DCAR_017474 Daucus carota HOM05D007166 ORTHO05D009039 2.3e-36 156.4 105 90.5
MD08G1014000 Malus domestica HOM05D007166 ORTHO05D009039 3.0e-36 156.0 187 58.8
THA.LOC104813791 Tarenaya hassleriana HOM05D007166 ORTHO05D009039 3.0e-36 156.0 197 57.4
Aa31LG4G5920 Aethionema arabicum HOM05D007166 ORTHO05D009039 5.1e-36 155.2 191 57.6
MSTRG.1201 Avicennia marina HOM05D007166 ORTHO05D009039 5.1e-36 155.2 198 57.6
BcaC03g15610 Brassica carinata HOM05D007166 ORTHO05D009039 6.6e-36 154.8 188 59.0
TAR628G0810 Trochodendron aralioides HOM05D007166 ORTHO05D009039 8.6e-36 154.5 189 59.8
PSO700G0103 Papaver somniferum HOM05D007166 ORTHO05D009039 1.1e-35 154.1 184 59.8
CARHR069090 Cardamine hirsuta HOM05D007166 ORTHO05D009039 1.5e-35 153.7 188 57.4
Lsat_1_v5_gn_9_46261 Lactuca sativa HOM05D007166 ORTHO05D009039 2.5e-35 152.9 191 58.6
HPP92_015209 Vanilla planifolia HOM05D007166 ORTHO05D009039 5.6e-35 151.8 187 57.8
AL2G35670 Arabidopsis lyrata HOM05D007166 ORTHO05D009039 7.3e-35 151.4 182 59.9
Thhalv10019268m.g Eutrema salsugineum HOM05D007166 ORTHO05D009039 4.7e-34 148.7 193 56.5
Carub.0002s2253 Capsella rubella HOM05D007166 ORTHO05D009039 6.2e-34 148.3 105 85.7
Os03g0244000 Oryza sativa ssp. japonica HOM05D007166 ORTHO05D009039 8.1e-34 147.9 190 56.8
PGSC0003DMG400003776 Solanum tuberosum HOM05D007166 ORTHO05D009039 8.1e-34 147.9 233 42.5
BolC6t40002H Brassica oleracea HOM05D007166 ORTHO05D009039 1.4e-33 147.1 184 57.6
Manes.18G014600 Manihot esculenta HOM05D007166 ORTHO05D009039 1.8e-33 146.7 201 55.7
ECA232G5036 Erigeron canadensis HOM05D007166 ORTHO05D009039 3.1e-33 146.0 105 84.8
CDE02G4515 Ceratophyllum demersum HOM05D007166 ORTHO05D009039 4.0e-33 145.6 156 62.2
HanXRQChr05g0146521 Helianthus annuus HOM05D007166 ORTHO05D009039 5.2e-33 145.2 105 82.9
C02p33780 Brassica napus HOM05D007166 ORTHO05D009039 6.9e-33 144.8 181 58.0
A07p41210 Brassica napus HOM05D007166 ORTHO05D009039 1.2e-32 144.1 184 57.1
BraA07t31656Z Brassica rapa HOM05D007166 ORTHO05D009039 1.2e-32 144.1 184 57.1
EL10Ac5g11627 Beta vulgaris HOM05D007166 ORTHO05D009039 2.6e-32 142.9 201 54.2
A02p20150 Brassica napus HOM05D007166 ORTHO05D009039 2.6e-32 142.9 184 56.5
BolC2t09326H Brassica oleracea HOM05D007166 ORTHO05D009039 4.4e-32 142.1 181 57.5
C06p49630 Brassica napus HOM05D007166 ORTHO05D009039 5.8e-32 141.7 182 57.1
BraA02t07050Z Brassica rapa HOM05D007166 ORTHO05D009039 5.8e-32 141.7 181 57.5
Zm00001eb081060 Zea mays HOM05D007166 ORTHO05D009039 5.8e-32 141.7 190 54.7
AagrBONN_evm.TU.Sc2ySwM_369.321 Anthoceros agrestis HOM05D007166 ORTHO05D009039 1.2e-29 134.0 105 74.3
Pp3s104_40 Physcomitrium patens HOM05D007166 ORTHO05D009039 4.6e-29 132.1 105 74.3
Pp3c22_16100 Physcomitrium patens HOM05D007166 ORTHO05D009039 3.9e-28 129.0 127 64.6
Mapoly0005s0157 Marchantia polymorpha HOM05D007166 ORTHO05D009039 1.1e-27 127.5 105 74.3
Cfa013938 Carpinus fangiana HOM05D007166 ORTHO05D009039 1.1e-25 120.9 225 39.1
SMO165G0060 Selaginella moellendorffii HOM05D007166 ORTHO05D009039 1.1e-25 120.9 105 70.5
Ciclev10002412m.g Citrus clementina HOM05D007166 ORTHO05D009039 5.3e-25 118.6 211 40.8
Nitab4.5_0001540g0050 Nicotiana tabacum HOM05D007166 ORTHO05D009039 1.5e-24 117.1 194 43.3
AUR62036485 Chenopodium quinoa HOM05D007166 ORTHO05D009039 1.7e-23 113.6 196 50.0
CBR_g44435 Chara braunii HOM05D007166 ORTHO05D009039 3.8e-23 112.5 118 64.4
CDE02G3586 Ceratophyllum demersum HOM05D007166 ORTHO05D009039 1.4e-22 110.5 145 46.2
BcaB05g24933 Brassica carinata HOM05D007166 ORTHO05D009039 5.1e-20 102.1 177 40.7
AUR62037091 Chenopodium quinoa HOM05D007166 ORTHO05D009039 4.3e-19 99.0 168 42.3
Cpa.g.sc1059.4 Carica papaya HOM05D007166 ORTHO05D009039 3.7e-18 95.9 143 45.5
HPP92_015221 Vanilla planifolia HOM05D007166 ORTHO05D009039 5.8e-16 88.6 127 44.1
arahy.Tifrunner.gnm1.ann1.MS74EG Arachis hypogaea HOM05D007166 ORTHO05D009039 4.9e-15 85.5 105 49.5
ATR0912G003 Amborella trichopoda HOM05D007166 ORTHO05D009039 8.7e-12 74.7 60 60.0
MBI09_g08444_MAGBIO Magnolia biondii HOM05D007166 ORTHO05D009039 1.3e-10 70.9 96 41.7
Thecc.09G255600 Theobroma cacao HOM05D007166 ORTHO05D009039 2.4e-09 66.6 131 37.4
Aqoxy5G01769 Aquilegia oxysepala HOM05D007166 ORTHO05D009039 1.3e-07 60.8 131 36.6
FAN27G0088 Fragaria x ananassa HOM05D007166 ORTHO05D009039 3.2e-06 56.2 57 54.4


User provided reference genes

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