Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0017019 Lotus japonicus HOM05D006733 ORTHO05D008406 2.0e-32 141.7 66 100.0
Lj3g0014029 Lotus japonicus HOM05D006733 ORTHO05D008406 1.2e-18 95.9 49 87.8
Ca_24272_v3 Cicer arietinum L. HOM05D006733 ORTHO05D008406 8.0e-18 93.2 49 81.6
Glyma.06G242900 Glycine max HOM05D006733 ORTHO05D008406 2.0e-16 88.6 49 81.6
Glyma.12G154300 Glycine max HOM05D006733 ORTHO05D008406 3.4e-16 87.8 49 81.6
CiPaw.11G169300 Carya illinoinensis HOM05D006733 ORTHO05D008406 1.7e-15 85.5 50 74.0
Lalb_Chr01g0006561 Lupinus albus HOM05D006733 ORTHO05D008406 2.2e-15 85.1 49 75.5
GSVIVG01014340001 Vitis vinifera HOM05D006733 ORTHO05D008406 8.3e-15 83.2 50 70.0
QL08p021800 Quercus lobata HOM05D006733 ORTHO05D008406 1.1e-14 82.8 49 69.4
Cfa020588 Carpinus fangiana HOM05D006733 ORTHO05D008406 3.1e-14 81.3 50 68.0
Medtr8g060850 Medicago truncatula HOM05D006733 ORTHO05D008406 4.1e-14 80.9 49 71.4
Haze_09425 Corylus avellana HOM05D006733 ORTHO05D008406 1.2e-13 79.3 50 68.0
arahy.Tifrunner.gnm1.ann1.XP1NDF Arachis hypogaea HOM05D006733 ORTHO05D008406 1.6e-13 79.0 49 69.4
MD03G1227300 Malus domestica HOM05D006733 ORTHO05D008406 4.5e-13 77.4 50 66.0
MD03G1227500 Malus domestica HOM05D006733 ORTHO05D008406 4.5e-13 77.4 50 66.0
Hma1.2p1_0885F.1_g232600 Hydrangea macrophylla HOM05D006733 ORTHO05D008406 7.8e-13 76.6 50 62.0
Nn1g04086 Nelumbo nucifera HOM05D006733 ORTHO05D008406 1.7e-12 75.5 48 62.5
CiPaw.12G118000 Carya illinoinensis HOM05D006733 ORTHO05D008406 2.3e-12 75.1 51 70.6
PGR031G3292 Punica granatum HOM05D006733 ORTHO05D008406 3.9e-12 74.3 50 60.0
Nitab4.5_0000332g0130 Nicotiana tabacum HOM05D006733 ORTHO05D008406 5.0e-12 73.9 50 64.0
Atru.chr2.2617 Acer truncatum HOM05D006733 ORTHO05D008406 6.6e-12 73.6 50 66.0
Oeu024912.1 Olea europaea HOM05D006733 ORTHO05D008406 8.6e-12 73.2 48 64.6
DCAR_013104 Daucus carota HOM05D006733 ORTHO05D008406 1.5e-11 72.4 48 64.6
PGR083G2703 Punica granatum HOM05D006733 ORTHO05D008406 1.5e-11 72.4 50 60.0
FAN11G2570 Fragaria x ananassa HOM05D006733 ORTHO05D008406 1.9e-11 72.0 50 68.0
FAN25G0136 Fragaria x ananassa HOM05D006733 ORTHO05D008406 1.9e-11 72.0 50 68.0
Atru.chr2.2618 Acer truncatum HOM05D006733 ORTHO05D008406 2.5e-11 71.6 48 64.6
Atru.chr2.2701 Acer truncatum HOM05D006733 ORTHO05D008406 2.5e-11 71.6 48 64.6
Eucgr.F01127 Eucalyptus grandis HOM05D006733 ORTHO05D008406 2.5e-11 71.6 48 60.4
Nitab4.5_0005764g0010 Nicotiana tabacum HOM05D006733 ORTHO05D008406 2.5e-11 71.6 50 60.0
FAN21G3200 Fragaria x ananassa HOM05D006733 ORTHO05D008406 3.3e-11 71.2 50 68.0
FvH4_3g20030 Fragaria vesca HOM05D006733 ORTHO05D008406 5.6e-11 70.5 50 66.0
MD11G1246800 Malus domestica HOM05D006733 ORTHO05D008406 5.6e-11 70.5 50 60.0
Atru.chr2.2702 Acer truncatum HOM05D006733 ORTHO05D008406 7.3e-11 70.1 48 64.6
MBI06_g04174_MAGBIO Magnolia biondii HOM05D006733 ORTHO05D008406 7.3e-11 70.1 52 63.5
Prupe.4G181500 Prunus persica HOM05D006733 ORTHO05D008406 9.5e-11 69.7 50 60.0
TWI38G1652 Tripterygium wilfordii HOM05D006733 ORTHO05D008406 9.5e-11 69.7 50 60.0
Aqoxy4G00811 Aquilegia oxysepala HOM05D006733 ORTHO05D008406 1.2e-10 69.3 48 62.5
RcHm_v2.0_Chr5g0033741 Rosa chinensis HOM05D006733 ORTHO05D008406 1.2e-10 69.3 50 66.0
Rhsim06G0198600 Rhododendron simsii HOM05D006733 ORTHO05D008406 1.6e-10 68.9 53 58.5
Thecc.07G089300 Theobroma cacao HOM05D006733 ORTHO05D008406 2.1e-10 68.6 50 62.0
TWI39G1253 Tripterygium wilfordii HOM05D006733 ORTHO05D008406 2.1e-10 68.6 50 62.0
Actinidia12807 Actinidia chinensis HOM05D006733 ORTHO05D008406 6.1e-10 67.0 47 63.8
FAN16G0436 Fragaria x ananassa HOM05D006733 ORTHO05D008406 1.0e-09 66.2 50 64.0
Sc16g0006980 Simmondsia chinensis HOM05D006733 ORTHO05D008406 1.0e-09 66.2 50 56.0
Gohir.A11G284800 Gossypium hirsutum HOM05D006733 ORTHO05D008406 3.1e-09 64.7 49 61.2
vmacro11863 Vaccinium macrocarpon HOM05D006733 ORTHO05D008406 4.0e-09 64.3 50 58.0
COL.COLO4_27167 Corchorus olitorius HOM05D006733 ORTHO05D008406 6.8e-09 63.5 48 56.2
Gohir.D11G297700 Gossypium hirsutum HOM05D006733 ORTHO05D008406 6.8e-09 63.5 50 60.0
Gorai.007G322600 Gossypium raimondii HOM05D006733 ORTHO05D008406 6.8e-09 63.5 50 60.0
BolC3t17038H Brassica oleracea HOM05D006733 ORTHO05D008406 8.9e-09 63.2 47 57.4
BcaC01g03880 Brassica carinata HOM05D006733 ORTHO05D008406 1.2e-08 62.8 47 59.6
C03p47630 Brassica napus HOM05D006733 ORTHO05D008406 1.2e-08 62.8 47 59.6
A05p34080 Brassica napus HOM05D006733 ORTHO05D008406 2.0e-08 62.0 48 58.3
BraA05t22229Z Brassica rapa HOM05D006733 ORTHO05D008406 2.0e-08 62.0 48 58.3
CAN.G739.12 Capsicum annuum HOM05D006733 ORTHO05D008406 2.0e-08 62.0 62 50.0
Sc03g0009960 Simmondsia chinensis HOM05D006733 ORTHO05D008406 2.0e-08 62.0 48 56.2
ATR0737G148 Amborella trichopoda HOM05D006733 ORTHO05D008406 3.4e-08 61.2 50 56.0
Manes.15G086700 Manihot esculenta HOM05D006733 ORTHO05D008406 5.8e-08 60.5 50 56.0
Oeu037948.1 Olea europaea HOM05D006733 ORTHO05D008406 5.8e-08 60.5 48 56.2
BcaC05g28981 Brassica carinata HOM05D006733 ORTHO05D008406 7.5e-08 60.1 48 56.2
BolC5t33870H Brassica oleracea HOM05D006733 ORTHO05D008406 7.5e-08 60.1 48 56.2
Migut.M00808 Erythranthe guttata HOM05D006733 ORTHO05D008406 1.3e-07 59.3 46 60.9
SalBow7G1032 Salvia bowleyana HOM05D006733 ORTHO05D008406 1.7e-07 58.9 48 58.3
Aqoxy4G00809 Aquilegia oxysepala HOM05D006733 ORTHO05D008406 2.9e-07 58.2 48 60.4
PSO541G4814 Papaver somniferum HOM05D006733 ORTHO05D008406 2.9e-07 58.2 50 60.0
CARHR090380 Cardamine hirsuta HOM05D006733 ORTHO05D008406 3.7e-07 57.8 49 53.1
Duzib170G0030 Durio zibethinus HOM05D006733 ORTHO05D008406 3.7e-07 57.8 48 56.2
Gohir.A04G030300 Gossypium hirsutum HOM05D006733 ORTHO05D008406 3.7e-07 57.8 48 52.1
Os01g0200700 Oryza sativa ssp. japonica HOM05D006733 ORTHO05D008406 3.7e-07 57.8 48 54.2
AL3G27820 Arabidopsis lyrata HOM05D006733 ORTHO05D008406 4.9e-07 57.4 49 53.1
Duzib170G0610 Durio zibethinus HOM05D006733 ORTHO05D008406 4.9e-07 57.4 48 54.2
Gorai.009G388200 Gossypium raimondii HOM05D006733 ORTHO05D008406 4.9e-07 57.4 48 52.1
BcaB06g29562 Brassica carinata HOM05D006733 ORTHO05D008406 6.4e-07 57.0 48 54.2
Carub.0003s1505 Capsella rubella HOM05D006733 ORTHO05D008406 6.4e-07 57.0 49 53.1
Cc05_g12060 Coffea canephora HOM05D006733 ORTHO05D008406 1.1e-06 56.2 50 52.0
Gohir.D05G356700 Gossypium hirsutum HOM05D006733 ORTHO05D008406 1.1e-06 56.2 48 52.1
Gorai.009G388900 Gossypium raimondii HOM05D006733 ORTHO05D008406 1.1e-06 56.2 48 52.1
Gohir.D05G355800 Gossypium hirsutum HOM05D006733 ORTHO05D008406 1.4e-06 55.8 48 52.1
Aa31LG8G2570 Aethionema arabicum HOM05D006733 ORTHO05D008406 1.9e-06 55.5 47 48.9
Thhalv10021853m.g Eutrema salsugineum HOM05D006733 ORTHO05D008406 1.9e-06 55.5 49 51.0
Potri.001G400100 Populus trichocarpa HOM05D006733 ORTHO05D008406 1.9e-06 55.5 50 52.0
PGSC0003DMG400015318 Solanum tuberosum HOM05D006733 ORTHO05D008406 1.9e-06 55.5 50 50.0
Gohir.A04G029916 Gossypium hirsutum HOM05D006733 ORTHO05D008406 2.4e-06 55.1 63 42.9
Gohir.D05G356800 Gossypium hirsutum HOM05D006733 ORTHO05D008406 3.2e-06 54.7 49 46.9
Gorai.009G389000 Gossypium raimondii HOM05D006733 ORTHO05D008406 3.2e-06 54.7 49 46.9
Hund02223 Selenicereus undatus HOM05D006733 ORTHO05D008406 3.2e-06 54.7 48 50.0
Gohir.A04G030100 Gossypium hirsutum HOM05D006733 ORTHO05D008406 4.1e-06 54.3 48 50.0
Gorai.009G388600 Gossypium raimondii HOM05D006733 ORTHO05D008406 4.1e-06 54.3 48 50.0
Rhsim06G0198700 Rhododendron simsii HOM05D006733 ORTHO05D008406 7.0e-06 53.5 43 53.5
SalBow7G4025 Salvia bowleyana HOM05D006733 ORTHO05D008406 7.0e-06 53.5 48 52.1


User provided reference genes

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