Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0016888 Lotus japonicus HOM05D004999 ORTHO05D007513 7.2e-251 870.2 454 100.0
Lj5g0025890 Lotus japonicus HOM05D004999 ORTHO05D007513 1.8e-241 839.0 456 94.3
Glyma.17G257600 Glycine max HOM05D004999 ORTHO05D007513 1.3e-196 689.9 455 79.3
Ca_13413_v3 Cicer arietinum L. HOM05D004999 ORTHO05D007513 3.6e-194 681.8 435 80.7
arahy.Tifrunner.gnm1.ann1.BI3E2S Arachis hypogaea HOM05D004999 ORTHO05D007513 1.1e-190 670.2 436 78.2
VMungo0647G0227 Vigna mungo HOM05D004999 ORTHO05D007513 2.4e-190 669.1 454 77.8
arahy.Tifrunner.gnm1.ann1.A5JBZH Arachis hypogaea HOM05D004999 ORTHO05D007513 5.4e-190 667.9 436 77.8
Phvul.001G007200 Phaseolus vulgaris HOM05D004999 ORTHO05D007513 2.7e-189 665.6 454 77.8
Lalb_Chr24g0398721 Lupinus albus HOM05D004999 ORTHO05D007513 2.5e-187 659.1 438 77.4
Medtr1g024920 Medicago truncatula HOM05D004999 ORTHO05D007513 1.2e-186 656.8 449 77.7
TPR.G30999 Trifolium pratense HOM05D004999 ORTHO05D007513 2.8e-186 655.6 441 79.1
Atru.chr13.305 Acer truncatum HOM05D004999 ORTHO05D007513 6.7e-172 607.8 433 69.5
TPR.G34334 Trifolium pratense HOM05D004999 ORTHO05D007513 1.5e-171 606.7 415 78.3
Prupe.1G366700 Prunus persica HOM05D004999 ORTHO05D007513 2.4e-169 599.4 434 70.5
Cfa013940 Carpinus fangiana HOM05D004999 ORTHO05D007513 5.3e-169 598.2 428 71.7
CiPaw.08G065700 Carya illinoinensis HOM05D004999 ORTHO05D007513 2.9e-167 592.4 449 69.7
Haze_22624 Corylus avellana HOM05D004999 ORTHO05D007513 2.4e-166 589.3 471 66.0
TWI56G0255 Tripterygium wilfordii HOM05D004999 ORTHO05D007513 3.2e-166 589.0 434 69.6
Thecc.08G043100 Theobroma cacao HOM05D004999 ORTHO05D007513 5.5e-166 588.2 433 69.7
MD08G1013700 Malus domestica HOM05D004999 ORTHO05D007513 7.1e-166 587.8 432 69.7
QL02p011429 Quercus lobata HOM05D004999 ORTHO05D007513 1.2e-165 587.0 457 68.1
FvH4_2g38570 Fragaria vesca HOM05D004999 ORTHO05D007513 2.7e-165 585.9 434 68.9
Dinv39509 Davidia involucrata HOM05D004999 ORTHO05D007513 1.0e-164 583.9 439 69.2
Duzib041G0279 Durio zibethinus HOM05D004999 ORTHO05D007513 1.3e-164 583.6 436 68.3
Gorai.009G195100 Gossypium raimondii HOM05D004999 ORTHO05D007513 1.3e-164 583.6 434 68.0
TWI36G1418 Tripterygium wilfordii HOM05D004999 ORTHO05D007513 2.5e-163 579.3 435 67.8
Gohir.D05G189800 Gossypium hirsutum HOM05D004999 ORTHO05D007513 3.3e-163 578.9 434 67.5
GSVIVG01009891001 Vitis vinifera HOM05D004999 ORTHO05D007513 3.3e-163 578.9 445 66.7
RcHm_v2.0_Chr6g0302731 Rosa chinensis HOM05D004999 ORTHO05D007513 7.4e-163 577.8 433 68.4
FAN27G0904 Fragaria x ananassa HOM05D004999 ORTHO05D007513 2.1e-162 576.2 434 67.5
Gohir.A05G186900 Gossypium hirsutum HOM05D004999 ORTHO05D007513 1.8e-161 573.2 434 67.3
Ciclev10001119m.g Citrus clementina HOM05D004999 ORTHO05D007513 3.1e-161 572.4 430 66.7
MD15G1013300 Malus domestica HOM05D004999 ORTHO05D007513 2.6e-160 569.3 432 67.8
CSS0048815 Camellia sinensis var. sinensis HOM05D004999 ORTHO05D007513 7.6e-160 567.8 432 67.4
Duzib093G1482 Durio zibethinus HOM05D004999 ORTHO05D007513 1.0e-159 567.4 435 68.0
CsaV3_2G029460 Cucumis sativus L. HOM05D004999 ORTHO05D007513 2.2e-159 566.2 440 66.4
MELO3C011005.2 Cucumis melo HOM05D004999 ORTHO05D007513 2.9e-159 565.8 438 66.0
Actinidia15416 Actinidia chinensis HOM05D004999 ORTHO05D007513 4.9e-159 565.1 436 66.7
Glyma.14G218500 Glycine max HOM05D004999 ORTHO05D007513 8.4e-159 564.3 382 77.2
Sed0007289 Sechium edule HOM05D004999 ORTHO05D007513 8.4e-159 564.3 433 67.2
TAR381G0667 Trochodendron aralioides HOM05D004999 ORTHO05D007513 1.0e-156 557.4 471 62.8
FAN15G0085 Fragaria x ananassa HOM05D004999 ORTHO05D007513 3.9e-156 555.4 449 65.3
Sc02g0008530 Simmondsia chinensis HOM05D004999 ORTHO05D007513 5.1e-156 555.1 436 64.9
ClCG08G014370 Citrullus lanatus HOM05D004999 ORTHO05D007513 6.7e-156 554.7 438 65.5
Lj4A25T52 Lonicera japonica HOM05D004999 ORTHO05D007513 6.7e-156 554.7 442 65.6
Manes.05G148301 Manihot esculenta HOM05D004999 ORTHO05D007513 8.7e-156 554.3 416 69.0
Potri.002G023300 Populus trichocarpa HOM05D004999 ORTHO05D007513 1.5e-155 553.5 434 66.8
Rhsim06G0021900 Rhododendron simsii HOM05D004999 ORTHO05D007513 9.7e-155 550.8 438 65.3
ECA238G1075 Erigeron canadensis HOM05D004999 ORTHO05D007513 2.4e-153 546.2 459 62.3
Nn1g05879 Nelumbo nucifera HOM05D004999 ORTHO05D007513 2.0e-152 543.1 435 64.8
Aqoxy5G01776 Aquilegia oxysepala HOM05D004999 ORTHO05D007513 5.0e-151 538.5 477 61.4
CANSAT01G2959 Cannabis sativa HOM05D004999 ORTHO05D007513 5.0e-151 538.5 443 65.2
PGR083G2044 Punica granatum HOM05D004999 ORTHO05D007513 1.1e-150 537.3 437 63.6
Dinv31836 Davidia involucrata HOM05D004999 ORTHO05D007513 1.6e-149 533.5 466 61.6
THA.LOC104806888 Tarenaya hassleriana HOM05D004999 ORTHO05D007513 1.6e-149 533.5 436 65.1
SalBow7G4700 Salvia bowleyana HOM05D004999 ORTHO05D007513 6.1e-149 531.6 432 63.0
CAN.G311.21 Capsicum annuum HOM05D004999 ORTHO05D007513 2.3e-148 529.6 433 63.7
PGSC0003DMG400003779 Solanum tuberosum HOM05D004999 ORTHO05D007513 7.4e-147 524.6 440 62.7
Eucgr.F01642 Eucalyptus grandis HOM05D004999 ORTHO05D007513 9.7e-147 524.2 419 66.3
Sopen04g034980 Solanum pennellii HOM05D004999 ORTHO05D007513 3.7e-146 522.3 434 63.1
Solyc04g081360.3 Solanum lycopersicum HOM05D004999 ORTHO05D007513 4.8e-146 521.9 439 62.2
Migut.C00822 Erythranthe guttata HOM05D004999 ORTHO05D007513 6.9e-145 518.1 431 62.4
Thhalv10001448m.g Eutrema salsugineum HOM05D004999 ORTHO05D007513 6.9e-145 518.1 435 63.2
Sp4g27780 Schrenkiella parvula HOM05D004999 ORTHO05D007513 9.1e-145 517.7 431 62.6
SGA_v2.0_scaffold11G05913 Striga asiatica HOM05D004999 ORTHO05D007513 1.2e-144 517.3 431 62.4
Carub.0004s2839 Capsella rubella HOM05D004999 ORTHO05D007513 1.5e-144 516.9 431 62.6
vmacro21722 Vaccinium macrocarpon HOM05D004999 ORTHO05D007513 3.4e-144 515.8 526 55.7
EL10Ac6g14553 Beta vulgaris HOM05D004999 ORTHO05D007513 5.0e-143 511.9 441 61.9
Oeu020873.1 Olea europaea HOM05D004999 ORTHO05D007513 1.4e-142 510.4 431 62.4
AT2G45730 Arabidopsis thaliana HOM05D004999 ORTHO05D007513 4.2e-142 508.8 431 61.9
AL4G44920 Arabidopsis lyrata HOM05D004999 ORTHO05D007513 1.2e-141 507.3 436 61.9
Cc10_g01760 Coffea canephora HOM05D004999 ORTHO05D007513 1.6e-141 506.9 438 61.0
DCAR_017472 Daucus carota HOM05D004999 ORTHO05D007513 2.1e-141 506.5 432 61.8
PSO700G0267 Papaver somniferum HOM05D004999 ORTHO05D007513 7.9e-141 504.6 456 59.0
A04p33990 Brassica napus HOM05D004999 ORTHO05D007513 1.5e-139 500.4 433 60.3
PSO170G1336 Papaver somniferum HOM05D004999 ORTHO05D007513 1.5e-139 500.4 451 59.0
unitig_749.g13859 Utricularia gibba HOM05D004999 ORTHO05D007513 2.6e-139 499.6 436 58.3
BraA04t18860Z Brassica rapa HOM05D004999 ORTHO05D007513 3.3e-139 499.2 433 60.3
Lsat_1_v5_gn_2_8681 Lactuca sativa HOM05D004999 ORTHO05D007513 5.7e-139 498.4 431 61.3
Nitab4.5_0001540g0030 Nicotiana tabacum HOM05D004999 ORTHO05D007513 9.7e-139 497.7 433 60.7
CARHR140980 Cardamine hirsuta HOM05D004999 ORTHO05D007513 2.8e-138 496.1 433 61.2
C04p71790 Brassica napus HOM05D004999 ORTHO05D007513 8.2e-138 494.6 432 60.6
ATR0767G249 Amborella trichopoda HOM05D004999 ORTHO05D007513 1.4e-137 493.8 464 56.5
Hund05204 Selenicereus undatus HOM05D004999 ORTHO05D007513 3.1e-137 492.7 513 54.0
A03p25340 Brassica napus HOM05D004999 ORTHO05D007513 5.3e-137 491.9 431 60.6
BcaB01g03255 Brassica carinata HOM05D004999 ORTHO05D007513 6.9e-137 491.5 431 60.1
BraA03t11740Z Brassica rapa HOM05D004999 ORTHO05D007513 2.0e-136 490.0 431 60.1
Ah.04g153930 Amaranthus hybridus HOM05D004999 ORTHO05D007513 3.4e-136 489.2 445 58.9
BcaC02g07075 Brassica carinata HOM05D004999 ORTHO05D007513 1.0e-135 487.6 431 59.4
BolC4t28677H Brassica oleracea HOM05D004999 ORTHO05D007513 1.0e-135 487.6 431 59.4
Aa31LG9G12650 Aethionema arabicum HOM05D004999 ORTHO05D007513 1.1e-134 484.2 434 60.1
BcaC01g05108 Brassica carinata HOM05D004999 ORTHO05D007513 2.5e-134 483.0 430 58.6
FAN20G3168 Fragaria x ananassa HOM05D004999 ORTHO05D007513 3.2e-134 482.6 426 61.0
BcaB02g09016 Brassica carinata HOM05D004999 ORTHO05D007513 7.2e-134 481.5 432 60.0
Peaxi162Scf00438g00629 Petunia axillaris HOM05D004999 ORTHO05D007513 7.2e-134 481.5 431 59.4
HanXRQChr14g0430231 Helianthus annuus HOM05D004999 ORTHO05D007513 2.7e-133 479.6 441 58.5
C03p30250 Brassica napus HOM05D004999 ORTHO05D007513 8.0e-133 478.0 430 58.6
Zm00001eb142530 Zea mays HOM05D004999 ORTHO05D007513 5.7e-131 471.9 459 55.8
COL.COLO4_26158 Corchorus olitorius HOM05D004999 ORTHO05D007513 1.2e-128 464.2 378 63.8
Os04g0112300 Oryza sativa ssp. japonica HOM05D004999 ORTHO05D007513 2.2e-127 459.9 465 54.2
CDE09G1336 Ceratophyllum demersum HOM05D004999 ORTHO05D007513 8.5e-127 458.0 469 52.9
AUR62007769 Chenopodium quinoa HOM05D004999 ORTHO05D007513 8.5e-127 458.0 440 58.0
AUR62002963 Chenopodium quinoa HOM05D004999 ORTHO05D007513 2.5e-126 456.4 439 57.2
HPP92_027505 Vanilla planifolia HOM05D004999 ORTHO05D007513 1.5e-123 447.2 468 52.8
Sabra02G0019000 Salix brachista HOM05D004999 ORTHO05D007513 5.7e-123 445.3 426 58.5
Psat5g146560 Pisum sativum HOM05D004999 ORTHO05D007513 1.5e-118 430.6 298 78.9
BolC3t15374H Brassica oleracea HOM05D004999 ORTHO05D007513 1.1e-113 414.5 358 59.8
Pp3c13_19410 Physcomitrium patens HOM05D004999 ORTHO05D007513 1.8e-108 397.1 445 49.4
Potri.005G238200 Populus trichocarpa HOM05D004999 ORTHO05D007513 1.3e-103 380.9 298 66.4
Actinidia16981 Actinidia chinensis HOM05D004999 ORTHO05D007513 3.3e-102 376.3 436 50.0
Mapoly0050s0121 Marchantia polymorpha HOM05D004999 ORTHO05D007513 1.5e-99 367.5 521 43.2
AagrBONN_evm.TU.Sc2ySwM_344.355 Anthoceros agrestis HOM05D004999 ORTHO05D007513 7.5e-99 365.2 489 44.8
Cpa.g.sc8.166 Carica papaya HOM05D004999 ORTHO05D007513 5.0e-95 352.4 365 55.9
SMO367G0765 Selaginella moellendorffii HOM05D004999 ORTHO05D007513 4.7e-93 345.9 480 43.1
MBI09_g25164_MAGBIO Magnolia biondii HOM05D004999 ORTHO05D007513 1.7e-90 337.4 347 54.8
HPP92_022409 Vanilla planifolia HOM05D004999 ORTHO05D007513 2.4e-81 307.0 311 54.7
CBR_g45432 Chara braunii HOM05D004999 ORTHO05D007513 2.7e-80 303.5 609 34.3
Oeu054699.1 Olea europaea HOM05D004999 ORTHO05D007513 7.3e-70 268.9 516 37.6
MCO06G251 Micromonas commoda HOM05D004999 ORTHO05D007513 4.5e-59 233.0 460 35.4
PRCOL_00001952 Prasinoderma coloniale HOM05D004999 ORTHO05D007513 4.0e-52 209.9 453 31.6
Psat6g004000 Pisum sativum HOM05D000009 ORTHO05D000008 2.6e-51 207.2 225 53.8
Cre12.g543100 Chlamydomonas reinhardtii HOM05D004999 ORTHO05D007513 4.9e-50 203.0 492 29.9
Zm00001eb363800 Zea mays HOM05D004999 ORTHO05D007513 8.7e-47 192.2 156 64.1
Thecc.08G043300 Theobroma cacao HOM05D004999 ORTHO05D007513 3.7e-45 186.8 242 48.3
Thhalv10014705m.g Eutrema salsugineum HOM05D004999 ORTHO05D007513 6.9e-44 182.6 244 43.4
BolC9t55805H Brassica oleracea HOM05D004999 ORTHO05D040156 3.9e-23 113.6 196 44.9
C09p29400 Brassica napus HOM05D004999 ORTHO05D040156 1.1e-22 112.1 196 44.4
AL825U10010 Arabidopsis lyrata HOM05D004999 ORTHO05D007513 3.7e-21 107.1 110 57.3
C08p30330 Brassica napus HOM05D004999 ORTHO05D007513 2.0e-19 101.3 208 38.9
SEGI_23149 Sequoiadendron giganteum HOM05D004999 ORTHO05D007513 2.6e-19 100.9 90 56.7
SEGI_39734 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 3.8e-18 97.1 233 33.5
MBI18_g38864_MAGBIO Magnolia biondii HOM05D001046 ORTHO05D012920 3.0e-15 87.4 127 42.5
MBI17_g46501_MAGBIO Magnolia biondii HOM05D004999 ORTHO05D012920 4.4e-14 83.6 86 50.0
SEGI_05081 Sequoiadendron giganteum HOM05D004999 ORTHO05D007513 2.8e-13 80.9 63 60.3
C02p41440 Brassica napus HOM05D004999 ORTHO05D024529 4.8e-13 80.1 114 43.0
C04p17480 Brassica napus HOM05D004999 ORTHO05D024529 7.0e-12 76.3 116 42.2
BcaC01g01121 Brassica carinata HOM05D004999 ORTHO05D024221 2.0e-11 74.7 94 42.6
CAN.G566.39 Capsicum annuum HOM05D004999 ORTHO05D007513 2.0e-11 74.7 110 43.6
FAN24G3067 Fragaria x ananassa HOM05D004999 ORTHO05D209228 7.2e-09 66.2 113 41.6
BolC4t24340H Brassica oleracea HOM05D004999 ORTHO05D024529 1.2e-08 65.5 93 45.2
BolC4t23296H Brassica oleracea HOM05D004999 ORTHO05D024529 4.7e-08 63.5 93 44.1
Migut.C00804 Erythranthe guttata HOM05D004999 ORTHO05D007513 1.8e-07 61.6 35 74.3
A02p34280 Brassica napus HOM05D004999 ORTHO05D021597 5.2e-07 60.1 146 30.1
SalBow3G3141 Salvia bowleyana HOM05D004999 ORTHO05D360697 6.8e-07 59.7 34 76.5
BolC3t21145H Brassica oleracea HOM05D004999 ORTHO05D024221 9.7e-06 55.8 79 46.8
FAN27G1855 Fragaria x ananassa HOM05D004999 ORTHO05D209601 9.7e-06 55.8 80 43.8


User provided reference genes

Program Settings