Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0016794 Lotus japonicus HOM05D003511 ORTHO05D236221 3.0e-54 214.9 108 100.0
Phvul.007G041400 Phaseolus vulgaris HOM05D003511 ORTHO05D004403 2.2e-09 65.9 41 68.3
VMungo0720G0159 Vigna mungo HOM05D003511 ORTHO05D004403 2.2e-09 65.9 41 68.3
Lj5g0008514 Lotus japonicus HOM05D003511 ORTHO05D004403 6.5e-09 64.3 41 65.9
MD10G1099200 Malus domestica HOM05D003511 ORTHO05D004403 8.5e-09 63.9 41 65.9
Glyma.10G260900 Glycine max HOM05D003511 ORTHO05D004403 1.1e-08 63.5 41 65.9
Glyma.20G130366 Glycine max HOM05D003511 ORTHO05D004403 1.1e-08 63.5 41 65.9
TWI79G1106 Tripterygium wilfordii HOM05D003511 ORTHO05D004403 1.1e-08 63.5 41 61.0
Dinv42203 Davidia involucrata HOM05D003511 ORTHO05D004403 1.5e-08 63.2 41 63.4
Cfa004603 Carpinus fangiana HOM05D003511 ORTHO05D004403 1.9e-08 62.8 41 63.4
Haze_10199 Corylus avellana HOM05D003511 ORTHO05D004403 1.9e-08 62.8 41 63.4
Hma1.2p1_1518F.1_g288460 Hydrangea macrophylla HOM05D003511 ORTHO05D004403 1.9e-08 62.8 39 66.7
PSO541G1166 Papaver somniferum HOM05D003511 ORTHO05D004403 1.9e-08 62.8 41 63.4
Prupe.8G137300 Prunus persica HOM05D003511 ORTHO05D004403 1.9e-08 62.8 41 63.4
ATR0205G005 Amborella trichopoda HOM05D003511 ORTHO05D004403 2.5e-08 62.4 41 65.9
CSS0033371 Camellia sinensis var. sinensis HOM05D003511 ORTHO05D004403 2.5e-08 62.4 41 63.4
FvH4_2g04810 Fragaria vesca HOM05D003511 ORTHO05D004403 2.5e-08 62.4 41 63.4
FAN15G2851 Fragaria x ananassa HOM05D003511 ORTHO05D004403 2.5e-08 62.4 41 63.4
FAN20G1862 Fragaria x ananassa HOM05D003511 ORTHO05D004403 2.5e-08 62.4 41 63.4
FAN24G0829 Fragaria x ananassa HOM05D003511 ORTHO05D004403 2.5e-08 62.4 41 63.4
FAN27G0709 Fragaria x ananassa HOM05D003511 ORTHO05D004403 2.5e-08 62.4 41 63.4
CSS0003612 Camellia sinensis var. sinensis HOM05D003511 ORTHO05D004403 3.2e-08 62.0 39 66.7
CSS0042293 Camellia sinensis var. sinensis HOM05D003511 ORTHO05D004403 3.2e-08 62.0 39 66.7
CANSAT25G1711 Cannabis sativa HOM05D003511 ORTHO05D004403 3.2e-08 62.0 41 63.4
Lalb_Chr06g0165351 Lupinus albus HOM05D003511 ORTHO05D004403 3.2e-08 62.0 41 63.4
Gohir.A12G021400 Gossypium hirsutum HOM05D003511 ORTHO05D004403 4.2e-08 61.6 41 63.4
CSS0035504 Camellia sinensis var. sinensis HOM05D003511 ORTHO05D004403 5.5e-08 61.2 39 64.1
CiPaw.05G013100 Carya illinoinensis HOM05D003511 ORTHO05D004403 5.5e-08 61.2 41 61.0
ClCG05G010350 Citrullus lanatus HOM05D003511 ORTHO05D004403 5.5e-08 61.2 41 61.0
CsaV3_3G018140 Cucumis sativus L. HOM05D003511 ORTHO05D004403 5.5e-08 61.2 41 61.0
DCAR_001655 Daucus carota HOM05D003511 ORTHO05D004403 5.5e-08 61.2 39 61.5
Duzib052G0193 Durio zibethinus HOM05D003511 ORTHO05D004403 5.5e-08 61.2 41 63.4
Lj5C215T12 Lonicera japonica HOM05D003511 ORTHO05D004403 5.5e-08 61.2 41 61.0
Medtr1g107135 Medicago truncatula HOM05D003511 ORTHO05D004403 7.2e-08 60.8 43 58.1
arahy.Tifrunner.gnm1.ann1.VN0KJM Arachis hypogaea HOM05D003511 ORTHO05D004403 9.4e-08 60.5 41 63.4
Gohir.D12G021900 Gossypium hirsutum HOM05D003511 ORTHO05D004403 9.4e-08 60.5 41 61.0
Gorai.008G022200 Gossypium raimondii HOM05D003511 ORTHO05D004403 9.4e-08 60.5 41 61.0
MBI16_g09476_MAGBIO Magnolia biondii HOM05D003511 ORTHO05D004403 9.4e-08 60.5 39 64.1
Duzib132G0449 Durio zibethinus HOM05D003511 ORTHO05D004403 1.2e-07 60.1 41 61.0
Eucgr.I01093 Eucalyptus grandis HOM05D003511 ORTHO05D004403 1.2e-07 60.1 41 61.0
Lsat_1_v5_gn_9_111920 Lactuca sativa HOM05D003511 ORTHO05D004403 1.2e-07 60.1 39 61.5
MD10G1099600 Malus domestica HOM05D003511 ORTHO05D022111 1.2e-07 60.1 41 63.4
Thecc.02G110900 Theobroma cacao HOM05D003511 ORTHO05D004403 1.2e-07 60.1 41 61.0
TPR.G19062 Trifolium pratense HOM05D003511 ORTHO05D004403 1.2e-07 60.1 39 64.1
Aqoxy6G02835 Aquilegia oxysepala HOM05D003511 ORTHO05D004403 1.6e-07 59.7 39 61.5
SalBow6G6056 Salvia bowleyana HOM05D003511 ORTHO05D004403 1.6e-07 59.7 41 58.5
FvH4_2g04870 Fragaria vesca HOM05D003511 ORTHO05D004403 2.1e-07 59.3 41 61.0
FAN24G2294 Fragaria x ananassa HOM05D003511 ORTHO05D004403 2.1e-07 59.3 41 61.0
Nn5g30453 Nelumbo nucifera HOM05D003511 ORTHO05D004403 2.1e-07 59.3 39 61.5
Nitab4.5_0001480g0130 Nicotiana tabacum HOM05D003511 ORTHO05D004403 2.1e-07 59.3 41 58.5
Nitab4.5_0003699g0020 Nicotiana tabacum HOM05D003511 ORTHO05D004403 2.1e-07 59.3 41 58.5
Oeu013759.1 Olea europaea HOM05D003511 ORTHO05D004403 2.1e-07 59.3 41 61.0
TAR381G0671 Trochodendron aralioides HOM05D003511 ORTHO05D004403 2.1e-07 59.3 39 64.1
Atru.chr5.2454 Acer truncatum HOM05D003511 ORTHO05D004403 2.7e-07 58.9 41 58.5
Actinidia34394 Actinidia chinensis HOM05D003511 ORTHO05D004403 2.7e-07 58.9 39 61.5
ATR0661G369 Amborella trichopoda HOM05D003511 ORTHO05D004403 2.7e-07 58.9 41 63.4
Migut.B00398 Erythranthe guttata HOM05D003511 ORTHO05D004403 2.7e-07 58.9 41 56.1
HanXRQChr09g0251071 Helianthus annuus HOM05D003511 ORTHO05D004403 2.7e-07 58.9 39 59.0
Potri.009G093900 Populus trichocarpa HOM05D003511 ORTHO05D004403 2.7e-07 58.9 41 58.5
QL11p032729 Quercus lobata HOM05D003511 ORTHO05D004403 2.7e-07 58.9 41 58.5
Rhsim11G0156500 Rhododendron simsii HOM05D003511 ORTHO05D004403 2.7e-07 58.9 41 56.1
Rhsim11G0158000 Rhododendron simsii HOM05D003511 ORTHO05D004403 2.7e-07 58.9 41 56.1
Sabra09G0072200 Salix brachista HOM05D003511 ORTHO05D004403 2.7e-07 58.9 41 58.5
vmacro01992 Vaccinium macrocarpon HOM05D003511 ORTHO05D004403 2.7e-07 58.9 41 56.1
HPP92_006064 Vanilla planifolia HOM05D003511 ORTHO05D004403 2.7e-07 58.9 39 66.7
Oeu029532.2 Olea europaea HOM05D003511 ORTHO05D004403 3.6e-07 58.5 41 61.0
Sed0017826 Sechium edule HOM05D003511 ORTHO05D004403 3.6e-07 58.5 41 58.5
Ciclev10027816m.g Citrus clementina HOM05D003511 ORTHO05D004403 4.7e-07 58.2 41 56.1
DCAR_001656 Daucus carota HOM05D003511 ORTHO05D004403 4.7e-07 58.2 39 61.5
Hma1.2p1_1518F.1_g288470 Hydrangea macrophylla HOM05D003511 ORTHO05D004403 4.7e-07 58.2 39 61.5
FAN15G0970 Fragaria x ananassa HOM05D003511 ORTHO05D004403 6.1e-07 57.8 41 58.5
RcHm_v2.0_Chr6g0254541 Rosa chinensis HOM05D003511 ORTHO05D004403 6.1e-07 57.8 41 58.5
Ca_11061_v3 Cicer arietinum L. HOM05D003511 ORTHO05D004403 8.0e-07 57.4 41 61.0
PGR142G1515 Punica granatum HOM05D003511 ORTHO05D004403 8.0e-07 57.4 39 56.4
Sabra16G0187700 Salix brachista HOM05D003511 ORTHO05D004403 8.0e-07 57.4 42 52.4
Sc08g0001330 Simmondsia chinensis HOM05D003511 ORTHO05D004403 8.0e-07 57.4 41 61.0
CiPaw.05G013200 Carya illinoinensis HOM05D003511 ORTHO05D004403 1.0e-06 57.0 39 59.0
AUR62010328 Chenopodium quinoa HOM05D003511 ORTHO05D004403 1.4e-06 56.6 41 56.1
AUR62039058 Chenopodium quinoa HOM05D003511 ORTHO05D004403 1.4e-06 56.6 41 56.1
Atru.chr5.2448 Acer truncatum HOM05D003511 ORTHO05D004403 1.8e-06 56.2 39 59.0
Atru.chr5.2453 Acer truncatum HOM05D003511 ORTHO05D004403 1.8e-06 56.2 39 59.0
MSTRG.20193 Avicennia marina HOM05D003511 ORTHO05D004403 1.8e-06 56.2 39 56.4
EL10Ac9g22257 Beta vulgaris HOM05D003511 ORTHO05D004403 1.8e-06 56.2 41 56.1
COL.COLO4_32574 Corchorus olitorius HOM05D003511 ORTHO05D004403 1.8e-06 56.2 41 56.1
ECA240G1815 Erigeron canadensis HOM05D003511 ORTHO05D004403 1.8e-06 56.2 39 59.0
Lj5C215G13 Lonicera japonica HOM05D003511 ORTHO05D004403 1.8e-06 56.2 39 56.4
Manes.10G075700 Manihot esculenta HOM05D003511 ORTHO05D004403 1.8e-06 56.2 39 61.5
Potri.009G093500 Populus trichocarpa HOM05D003511 ORTHO05D004403 1.8e-06 56.2 39 59.0
Eucgr.I01091 Eucalyptus grandis HOM05D003511 ORTHO05D004403 2.3e-06 55.8 39 59.0
HanXRQChr10g0296941 Helianthus annuus HOM05D003511 ORTHO05D004403 2.3e-06 55.8 41 56.1
Atru.chr5.2456 Acer truncatum HOM05D003511 ORTHO05D004403 3.0e-06 55.5 41 56.1
Glyma.01G243600 Glycine max HOM05D003511 ORTHO05D004403 3.0e-06 55.5 39 59.0
Sabra09G0072100 Salix brachista HOM05D003511 ORTHO05D004403 3.0e-06 55.5 39 59.0
TWI75G1477 Tripterygium wilfordii HOM05D003511 ORTHO05D004403 3.0e-06 55.5 41 56.1
Eucgr.I01092 Eucalyptus grandis HOM05D003511 ORTHO05D004403 4.0e-06 55.1 39 56.4
Peaxi162Scf00152g00326 Petunia axillaris HOM05D003511 ORTHO05D004403 4.0e-06 55.1 41 53.7
Potri.001G299000 Populus trichocarpa HOM05D003511 ORTHO05D004403 4.0e-06 55.1 39 53.8
Cpa.g.sc106.113 Carica papaya HOM05D003511 ORTHO05D004403 5.2e-06 54.7 39 59.0
Phvul.002G053000 Phaseolus vulgaris HOM05D003511 ORTHO05D004403 5.2e-06 54.7 39 59.0
SEGI_38974 Sequoiadendron giganteum HOM05D003511 ORTHO05D004403 5.2e-06 54.7 39 56.4
VMungo1215G0806 Vigna mungo HOM05D003511 ORTHO05D004403 5.2e-06 54.7 39 59.0
Manes.10G075800 Manihot esculenta HOM05D003511 ORTHO05D004403 6.7e-06 54.3 41 53.7
Cfa004604 Carpinus fangiana HOM05D003511 ORTHO05D004403 8.8e-06 53.9 39 56.4
Glyma.20G130432 Glycine max HOM05D003511 ORTHO05D004403 8.8e-06 53.9 41 56.1
Thecc.02G111000 Theobroma cacao HOM05D003511 ORTHO05D004403 8.8e-06 53.9 39 53.8
GSVIVG01037900001 Vitis vinifera HOM05D003511 ORTHO05D004403 8.8e-06 53.9 39 56.4


User provided reference genes

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