Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0016761 Lotus japonicus HOM05D005909 ORTHO05D007481 5.5e-220 767.3 383 100.0
TPR.G4906 Trifolium pratense HOM05D005909 ORTHO05D007481 1.1e-196 689.9 383 88.3
Ca_06889_v3 Cicer arietinum L. HOM05D005909 ORTHO05D007481 4.3e-196 688.0 383 88.3
Medtr1g109590 Medicago truncatula HOM05D005909 ORTHO05D007481 7.5e-193 677.2 381 86.9
Glyma.20G120600 Glycine max HOM05D005909 ORTHO05D007481 1.1e-191 673.3 383 85.4
Psat6g224680 Pisum sativum HOM05D005909 ORTHO05D007481 2.4e-191 672.2 383 86.2
Lalb_Chr21g0308731 Lupinus albus HOM05D005909 ORTHO05D007481 9.2e-191 670.2 381 86.4
arahy.Tifrunner.gnm1.ann1.W577BF Arachis hypogaea HOM05D005909 ORTHO05D007481 6.2e-187 657.5 385 83.6
VMungo0720G1068 Vigna mungo HOM05D005909 ORTHO05D007481 6.8e-186 654.1 383 84.3
Phvul.007G032000 Phaseolus vulgaris HOM05D005909 ORTHO05D007481 1.5e-185 652.9 383 84.3
arahy.Tifrunner.gnm1.ann1.IU6D7D Arachis hypogaea HOM05D005909 ORTHO05D007481 2.2e-184 649.0 389 82.3
QL01p010815 Quercus lobata HOM05D005909 ORTHO05D007481 1.5e-180 636.3 385 80.8
QL93p0145_0024 Quercus lobata HOM05D005909 ORTHO05D007481 1.5e-180 636.3 385 80.8
CiPaw.05G242600 Carya illinoinensis HOM05D005909 ORTHO05D007481 2.9e-176 622.1 381 79.5
Prupe.1G316800 Prunus persica HOM05D005909 ORTHO05D007481 1.6e-174 616.3 377 78.8
Potri.010G120200 Populus trichocarpa HOM05D005909 ORTHO05D007481 2.1e-174 615.9 385 79.0
RcHm_v2.0_Chr4g0434411 Rosa chinensis HOM05D005909 ORTHO05D007481 2.7e-174 615.5 379 78.9
Sabra10G0090400 Salix brachista HOM05D005909 ORTHO05D007481 3.0e-173 612.1 386 78.2
Cfa015837 Carpinus fangiana HOM05D005909 ORTHO05D007481 1.1e-172 610.1 386 78.8
Atru.chr11.237 Acer truncatum HOM05D005909 ORTHO05D007481 1.9e-172 609.4 386 77.5
TAR622G1259 Trochodendron aralioides HOM05D005909 ORTHO05D007481 1.9e-172 609.4 384 76.8
COL.COLO4_32148 Corchorus olitorius HOM05D005909 ORTHO05D007481 4.3e-172 608.2 383 75.7
Nn4g23953 Nelumbo nucifera HOM05D005909 ORTHO05D007481 7.3e-172 607.4 386 76.9
TWI79G1572 Tripterygium wilfordii HOM05D005909 ORTHO05D007481 5.3e-170 601.3 381 76.4
FvH4_4g26720 Fragaria vesca HOM05D005909 ORTHO05D007481 6.9e-170 600.9 377 77.5
Hma1.2p1_2306F.1_g319360 Hydrangea macrophylla HOM05D005909 ORTHO05D007481 2.0e-169 599.4 386 76.2
CAN.G610.24 Capsicum annuum HOM05D005909 ORTHO05D007481 7.6e-169 597.4 383 73.9
Hma1.2p1_1314F.1_g274990 Hydrangea macrophylla HOM05D005909 ORTHO05D007481 7.6e-169 597.4 386 75.6
Ciclev10015519m.g Citrus clementina HOM05D005909 ORTHO05D007481 9.9e-169 597.0 386 74.4
CSS0033004 Camellia sinensis var. sinensis HOM05D005909 ORTHO05D007481 1.7e-168 596.3 386 74.1
MD16G1037200 Malus domestica HOM05D005909 ORTHO05D007481 1.7e-168 596.3 378 77.0
Nitab4.5_0002112g0090 Nicotiana tabacum HOM05D005909 ORTHO05D007481 2.2e-168 595.9 383 73.6
Actinidia14921 Actinidia chinensis HOM05D005909 ORTHO05D007481 3.8e-168 595.1 386 74.6
GSVIVG01011843001 Vitis vinifera HOM05D005909 ORTHO05D007481 4.9e-168 594.7 382 77.0
Aqoxy3G04056 Aquilegia oxysepala HOM05D005909 ORTHO05D007481 3.2e-167 592.0 385 75.6
Gohir.D02G171900 Gossypium hirsutum HOM05D005909 ORTHO05D007481 4.2e-167 591.7 386 74.1
Eucgr.G02238 Eucalyptus grandis HOM05D005909 ORTHO05D007481 5.4e-167 591.3 380 75.3
Duzib248G1493 Durio zibethinus HOM05D005909 ORTHO05D007481 1.6e-166 589.7 391 73.4
Solyc05g008870.3 Solanum lycopersicum HOM05D005909 ORTHO05D007481 3.5e-166 588.6 383 73.4
Gorai.005G193400 Gossypium raimondii HOM05D005909 ORTHO05D007481 4.6e-166 588.2 392 73.0
Sc14g0007280 Simmondsia chinensis HOM05D005909 ORTHO05D007481 4.6e-166 588.2 387 74.9
Sopen05g004630 Solanum pennellii HOM05D005909 ORTHO05D007481 6.0e-166 587.8 383 73.1
CARHR143760 Cardamine hirsuta HOM05D005909 ORTHO05D007481 1.0e-165 587.0 384 73.2
Gohir.A03G148900 Gossypium hirsutum HOM05D005909 ORTHO05D007481 1.3e-165 586.6 393 73.3
Nitab4.5_0000694g0120 Nicotiana tabacum HOM05D005909 ORTHO05D007481 1.3e-165 586.6 383 73.6
PGR119G2457 Punica granatum HOM05D005909 ORTHO05D007481 1.7e-165 586.3 385 72.7
Haze_00654 Corylus avellana HOM05D005909 ORTHO05D007481 5.1e-165 584.7 518 61.2
PSO782G5715 Papaver somniferum HOM05D005909 ORTHO05D007481 1.5e-164 583.2 381 74.3
DCAR_007264 Daucus carota HOM05D005909 ORTHO05D007481 3.3e-164 582.0 381 73.5
Cc11_g09670 Coffea canephora HOM05D005909 ORTHO05D007481 7.3e-164 580.9 384 73.2
MBI16_g44832_MAGBIO Magnolia biondii HOM05D005909 ORTHO05D007481 7.3e-164 580.9 385 74.3
BcaC06g34207 Brassica carinata HOM05D005909 ORTHO05D007481 1.6e-163 579.7 379 71.5
vmacro10599 Vaccinium macrocarpon HOM05D005909 ORTHO05D007481 2.1e-163 579.3 386 72.5
Sed0017467 Sechium edule HOM05D005909 ORTHO05D007481 4.8e-163 578.2 386 72.0
Rhsim09G0103900 Rhododendron simsii HOM05D005909 ORTHO05D007481 1.1e-162 577.0 402 70.4
THA.LOC104823950 Tarenaya hassleriana HOM05D005909 ORTHO05D007481 1.1e-162 577.0 384 72.4
HanXRQChr15g0477421 Helianthus annuus HOM05D005909 ORTHO05D007481 9.0e-162 573.9 386 72.5
Lsat_1_v5_gn_3_62021 Lactuca sativa HOM05D005909 ORTHO05D007481 9.0e-162 573.9 383 72.6
SalBow8G3248 Salvia bowleyana HOM05D005909 ORTHO05D007481 2.0e-161 572.8 377 72.9
C07p31670 Brassica napus HOM05D005909 ORTHO05D007481 3.4e-161 572.0 380 71.1
BolC7t43706H Brassica oleracea HOM05D005909 ORTHO05D007481 3.4e-161 572.0 380 71.1
AL5G10170 Arabidopsis lyrata HOM05D005909 ORTHO05D007481 5.8e-161 571.2 384 71.4
Sp2g12680 Schrenkiella parvula HOM05D005909 ORTHO05D007481 5.8e-161 571.2 381 70.3
CsaV3_5G028790 Cucumis sativus L. HOM05D005909 ORTHO05D007481 9.9e-161 570.5 386 71.0
MELO3C005340.2 Cucumis melo HOM05D005909 ORTHO05D007481 1.7e-160 569.7 386 71.0
Aa31LG2G8670 Aethionema arabicum HOM05D005909 ORTHO05D007481 6.4e-160 567.8 383 70.0
AUR62037268 Chenopodium quinoa HOM05D005909 ORTHO05D007481 8.4e-160 567.4 377 70.8
MSTRG.13555 Avicennia marina HOM05D005909 ORTHO05D007481 1.1e-159 567.0 377 73.2
AUR62002812 Chenopodium quinoa HOM05D005909 ORTHO05D007481 2.4e-159 565.8 377 70.8
A06p44550 Brassica napus HOM05D005909 ORTHO05D007481 4.2e-159 565.1 385 69.4
ECA246G0525 Erigeron canadensis HOM05D005909 ORTHO05D007481 7.1e-159 564.3 383 71.0
AT2G01220 Arabidopsis thaliana HOM05D005909 ORTHO05D007481 9.3e-159 563.9 384 70.6
Lj6A753G52 Lonicera japonica HOM05D005909 ORTHO05D007481 1.6e-158 563.1 385 71.7
SalBow8G0352 Salvia bowleyana HOM05D005909 ORTHO05D007481 1.6e-158 563.1 384 71.4
BraA06t27329Z Brassica rapa HOM05D005909 ORTHO05D007481 6.0e-158 561.2 390 68.7
Hund20744 Selenicereus undatus HOM05D005909 ORTHO05D007481 1.3e-155 553.5 376 68.4
EL10Ac6g14305 Beta vulgaris HOM05D005909 ORTHO05D007481 2.8e-155 552.4 384 68.2
Thhalv10000909m.g Eutrema salsugineum HOM05D005909 ORTHO05D007481 1.8e-154 549.7 384 69.5
ATR0807G244 Amborella trichopoda HOM05D005909 ORTHO05D007481 1.3e-152 543.5 383 68.4
Zm00001eb360650 Zea mays HOM05D005909 ORTHO05D007481 4.9e-152 541.6 385 70.4
CDE08G1136 Ceratophyllum demersum HOM05D005909 ORTHO05D007481 6.5e-152 541.2 382 68.3
AL5G17030 Arabidopsis lyrata HOM05D005909 ORTHO05D007481 2.5e-151 539.3 387 66.4
CARHR148990 Cardamine hirsuta HOM05D005909 ORTHO05D007481 1.6e-150 536.6 384 65.6
Dinv16136 Davidia involucrata HOM05D005909 ORTHO05D007481 3.5e-150 535.4 382 70.7
Ah.03g138370 Amaranthus hybridus HOM05D005909 ORTHO05D007481 7.9e-150 534.3 356 70.5
Cpa.g.sc65.66 Carica papaya HOM05D005909 ORTHO05D007481 1.8e-149 533.1 383 68.9
Migut.E00369 Erythranthe guttata HOM05D005909 ORTHO05D007481 3.0e-149 532.3 427 64.6
HPP92_024514 Vanilla planifolia HOM05D005909 ORTHO05D007481 3.9e-149 531.9 378 69.8
Carub.0005s0605 Capsella rubella HOM05D005909 ORTHO05D007481 5.1e-149 531.6 381 68.0
PSO063G1187 Papaver somniferum HOM05D005909 ORTHO05D007481 1.3e-147 526.9 344 74.7
unitig_699.g19483 Utricularia gibba HOM05D005909 ORTHO05D007481 1.1e-146 523.9 377 69.2
AT3G27610 Arabidopsis thaliana HOM05D005909 ORTHO05D007481 1.8e-146 523.1 385 65.2
Peaxi162Scf00179g00534 Petunia axillaris HOM05D005909 ORTHO05D007481 7.6e-145 517.7 382 66.8
FAN07G1481 Fragaria x ananassa HOM05D005909 ORTHO05D007481 1.7e-144 516.5 352 73.0
Manes.06G064900 Manihot esculenta HOM05D005909 ORTHO05D007481 3.5e-142 508.8 310 80.0
ClCG01G005900 Citrullus lanatus HOM05D005909 ORTHO05D007481 2.3e-141 506.1 386 66.3
Thecc.02G222000 Theobroma cacao HOM05D005909 ORTHO05D007481 1.0e-133 480.7 308 76.3
FAN12G0127 Fragaria x ananassa HOM05D005909 ORTHO05D007481 9.1e-130 467.6 291 77.3
FAN22G0620 Fragaria x ananassa HOM05D005909 ORTHO05D007481 1.1e-127 460.7 291 76.3
FAN12G0185 Fragaria x ananassa HOM05D005909 ORTHO05D007481 1.5e-124 450.3 307 72.0
Dinv31596 Davidia involucrata HOM05D005909 ORTHO05D007481 2.4e-122 443.0 332 67.5
Oeu027686.1 Olea europaea HOM05D005909 ORTHO05D007481 1.0e-120 437.6 383 60.1
Actinidia16683 Actinidia chinensis HOM05D005909 ORTHO05D007481 1.3e-120 437.2 309 70.6
AagrBONN_evm.TU.Sc2ySwM_362.1435 Anthoceros agrestis HOM05D004406 ORTHO05D005660 2.5e-119 433.0 380 55.3
CANSAT01G0643 Cannabis sativa HOM05D005909 ORTHO05D007481 4.0e-117 425.6 281 73.3
Mapoly0100s0051 Marchantia polymorpha HOM05D005909 ORTHO05D007481 8.8e-117 424.5 377 54.9
Pp3c3_16750 Physcomitrium patens HOM05D005909 ORTHO05D007481 2.0e-108 396.7 379 50.7
Pp3c12_7340 Physcomitrium patens HOM05D005909 ORTHO05D007481 1.8e-106 390.2 381 50.4
SMO196G0003 Selaginella moellendorffii HOM05D005909 ORTHO05D007481 5.4e-106 388.7 403 48.6
Carub.0005s0021 Capsella rubella HOM05D005909 ORTHO05D007481 9.1e-106 387.9 266 71.1
FAN17G2694 Fragaria x ananassa HOM05D005909 ORTHO05D007481 6.5e-104 381.7 377 56.5
TAR622G0977 Trochodendron aralioides HOM05D005909 ORTHO05D007481 2.3e-101 373.2 232 77.2
Os01g0691500 Oryza sativa ssp. japonica HOM05D005909 ORTHO05D007481 2.2e-99 366.7 270 68.9
SGA_v2.0_scaffold14G06904 Striga asiatica HOM05D005909 ORTHO05D007481 2.4e-90 336.7 229 72.9
Carub.0005s0593 Capsella rubella HOM05D005909 ORTHO05D007481 1.1e-74 284.6 232 62.9
Cre06.g278116 Chlamydomonas reinhardtii HOM05D005909 ORTHO05D007481 5.4e-66 255.8 430 37.4
MCO06G004 Micromonas commoda HOM05D005909 ORTHO05D007481 2.1e-65 253.8 392 39.5
SGA_v2.0_scaffold14G06901 Striga asiatica HOM05D005909 ORTHO05D007481 1.5e-63 247.7 153 76.5
PGSC0003DMG401030529 Solanum tuberosum HOM05D005909 ORTHO05D007481 1.1e-58 231.5 153 72.5
PRCOL_00006609 Prasinoderma coloniale HOM05D005909 ORTHO05D007481 1.6e-57 227.6 419 37.0
SEGI_08541 Sequoiadendron giganteum HOM05D005909 ORTHO05D007481 2.9e-51 206.8 168 58.9
Oeu027687.1 Olea europaea HOM05D005909 ORTHO05D007481 1.5e-44 184.5 115 75.7
SEGI_29486 Sequoiadendron giganteum HOM05D005909 ORTHO05D007481 2.4e-37 160.6 109 65.1
CBR_g39317 Chara braunii HOM05D005909 ORTHO05D007481 1.9e-34 151.0 180 45.0
arahy.Tifrunner.gnm1.ann1.XNS652 Arachis hypogaea HOM05D005909 ORTHO05D007481 1.6e-30 137.9 144 56.9
TPR.G28941 Trifolium pratense HOM05D000324 ORTHO05D004875 3.0e-24 117.1 101 64.4
CiPaw.05G241800 Carya illinoinensis HOM05D005909 ORTHO05D007481 6.7e-24 115.9 66 80.3
SMO265G0018 Selaginella moellendorffii HOM05D005909 ORTHO05D007481 2.4e-21 107.5 136 41.9
SMO163G0092 Selaginella moellendorffii HOM05D005909 ORTHO05D007481 1.0e-19 102.1 149 39.6
BcaC06g31323 Brassica carinata HOM05D005909 ORTHO05D007481 2.9e-19 100.5 68 67.6
SMO146G0235 Selaginella moellendorffii HOM05D020292 ORTHO05D030583 4.1e-13 80.1 111 39.6
CBR_g39316 Chara braunii HOM05D000019 ORTHO05D000002 4.5e-12 76.6 71 52.1
Gohir.D12G121400 Gossypium hirsutum HOM05D005909 ORTHO05D046826 5.9e-12 76.3 36 100.0
SEGI_32432 Sequoiadendron giganteum HOM05D005909 ORTHO05D007481 2.2e-11 74.3 68 50.0
Gorai.008G132300 Gossypium raimondii HOM05D005909 ORTHO05D046826 7.2e-10 69.3 36 91.7
SMO199G0001 Selaginella moellendorffii HOM05D006925 ORTHO05D008830 2.6e-07 60.8 88 36.4


User provided reference genes

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