Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0016646 Lotus japonicus HOM05D007506 ORTHO05D008409 2.7e-31 138.3 82 100.0
Glyma.10G277900 Glycine max HOM05D007506 ORTHO05D008409 1.9e-21 105.5 82 72.0
Medtr1g111840 Medicago truncatula HOM05D007506 ORTHO05D008409 3.3e-21 104.8 81 74.1
Ca_25653_v3 Cicer arietinum L. HOM05D007506 ORTHO05D008409 4.3e-21 104.4 80 78.8
TPR.G2499 Trifolium pratense HOM05D007506 ORTHO05D008409 2.1e-20 102.1 73 75.3
VMungo0720G0153 Vigna mungo HOM05D007506 ORTHO05D008409 4.8e-20 100.9 85 68.2
Phvul.007G023500 Phaseolus vulgaris HOM05D007506 ORTHO05D008409 2.4e-19 98.6 84 66.7
Psat6g238400 Pisum sativum HOM05D007506 ORTHO05D008409 9.0e-19 96.7 77 77.9
Glyma.20G110900 Glycine max HOM05D007506 ORTHO05D008409 5.8e-18 94.0 85 67.1
Lalb_Chr02g0146201 Lupinus albus HOM05D007506 ORTHO05D008409 1.9e-16 89.0 84 73.8
arahy.Tifrunner.gnm1.ann1.DEP6R1 Arachis hypogaea HOM05D007506 ORTHO05D008409 4.2e-16 87.8 57 82.5
arahy.Tifrunner.gnm1.ann1.MBF964 Arachis hypogaea HOM05D007506 ORTHO05D008409 4.2e-16 87.8 57 82.5
Lalb_Chr06g0166331 Lupinus albus HOM05D007506 ORTHO05D008409 3.5e-15 84.7 79 68.4
THA.LOC104816468 Tarenaya hassleriana HOM05D012863 ORTHO05D008409 3.1e-11 71.6 88 52.3
arahy.Tifrunner.gnm1.ann1.KXIJ9T Arachis hypogaea HOM05D007506 ORTHO05D008409 5.3e-11 70.9 48 70.8
PGR142G2547 Punica granatum HOM05D007506 ORTHO05D008409 1.2e-10 69.7 81 61.7
RcHm_v2.0_Chr1g0331731 Rosa chinensis HOM05D007506 ORTHO05D008409 1.2e-10 69.7 86 61.6
Ciclev10017346m.g Citrus clementina HOM05D007506 ORTHO05D008409 3.4e-10 68.2 60 75.0
Cc02_g09560 Coffea canephora HOM05D007506 ORTHO05D008409 5.8e-10 67.4 63 63.5
THA.LOC109117254 Tarenaya hassleriana HOM05D012863 ORTHO05D008409 1.0e-09 66.6 88 50.0
Atru.chr12.1049 Acer truncatum HOM05D007506 ORTHO05D008409 2.2e-09 65.5 59 72.9
Haze_03301 Corylus avellana HOM05D007506 ORTHO05D008409 2.2e-09 65.5 66 68.2
Duzib106G0675 Durio zibethinus HOM05D007506 ORTHO05D008409 5.0e-09 64.3 66 66.7
QL04p046828 Quercus lobata HOM05D007506 ORTHO05D008409 5.0e-09 64.3 82 63.4
Thecc.10G114000 Theobroma cacao HOM05D007506 ORTHO05D008409 6.5e-09 63.9 62 67.7
Manes.07G086800 Manihot esculenta HOM05D007506 ORTHO05D008409 1.4e-08 62.8 60 70.0
Manes.10G062500 Manihot esculenta HOM05D007506 ORTHO05D008409 1.4e-08 62.8 82 59.8
CARHR208540 Cardamine hirsuta HOM05D012863 ORTHO05D008409 5.5e-08 60.8 67 56.7
CiPaw.14G033800 Carya illinoinensis HOM05D007506 ORTHO05D008409 5.5e-08 60.8 83 62.7
Nitab4.5_0002586g0040 Nicotiana tabacum HOM05D007506 ORTHO05D008409 1.6e-07 59.3 80 51.2
Hund06790 Selenicereus undatus HOM05D007506 ORTHO05D008409 1.6e-07 59.3 85 48.2
MD07G1070900 Malus domestica HOM05D007506 ORTHO05D008409 2.7e-07 58.5 55 63.6
Potri.010G240401 Populus trichocarpa HOM05D007506 ORTHO05D008409 3.5e-07 58.2 84 65.5
EL10Ac4g08692 Beta vulgaris HOM05D007506 ORTHO05D008409 4.6e-07 57.8 69 58.0
Dinv12843 Davidia involucrata HOM05D007506 ORTHO05D008409 4.6e-07 57.8 62 61.3
Migut.F00865 Erythranthe guttata HOM05D007506 ORTHO05D008409 4.6e-07 57.8 65 56.9
arahy.Tifrunner.gnm1.ann1.X5G790 Arachis hypogaea HOM05D007506 ORTHO05D008409 6.1e-07 57.4 42 69.0
Lsat_1_v5_gn_2_104161 Lactuca sativa HOM05D021830 ORTHO05D025293 6.1e-07 57.4 79 41.8
HanXRQChr12g0368271 Helianthus annuus HOM05D021830 ORTHO05D008409 1.0e-06 56.6 57 56.1
AL6G14410 Arabidopsis lyrata HOM05D012863 ORTHO05D008409 1.3e-06 56.2 67 53.7
Sc20g0001140 Simmondsia chinensis HOM05D007506 ORTHO05D008409 1.3e-06 56.2 87 54.0
Sabra08G0010500 Salix brachista HOM05D007506 ORTHO05D008409 1.8e-06 55.8 62 66.1
CSS0050385 Camellia sinensis var. sinensis HOM05D007506 ORTHO05D008409 2.3e-06 55.5 55 65.5
Potri.008G016801 Populus trichocarpa HOM05D007506 ORTHO05D008409 3.0e-06 55.1 84 59.5
Carub.0006s0364 Capsella rubella HOM05D012863 ORTHO05D008409 3.9e-06 54.7 71 52.1
AT5G04750 Arabidopsis thaliana HOM05D012863 ORTHO05D008409 5.1e-06 54.3 67 65.7
arahy.Tifrunner.gnm1.ann1.C6ZGU5 Arachis hypogaea HOM05D007506 ORTHO05D008409 5.1e-06 54.3 38 68.4
Cfa010331 Carpinus fangiana HOM05D007506 ORTHO05D008409 5.1e-06 54.3 53 69.8
Aqoxy7G00782 Aquilegia oxysepala HOM05D007506 ORTHO05D008409 6.7e-06 53.9 61 57.4
Oeu027974.1 Olea europaea HOM05D007506 ORTHO05D008409 6.7e-06 53.9 57 57.9
Sp6g38070 Schrenkiella parvula HOM05D012863 ORTHO05D008409 6.7e-06 53.9 67 52.2
Cpa.g.sc54.9 Carica papaya HOM05D007506 ORTHO05D008409 8.7e-06 53.5 54 64.8


User provided reference genes

Program Settings