Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0016487 Lotus japonicus HOM05D005766 ORTHO05D007002 0.0e+00 1224.2 614 100.0
Phvul.007G077400 Phaseolus vulgaris HOM05D005766 ORTHO05D007002 3.3e-299 1031.2 633 82.9
Glyma.10G228700 Glycine max HOM05D005766 ORTHO05D007002 5.6e-299 1030.4 638 81.8
TPR.G7746 Trifolium pratense HOM05D005766 ORTHO05D007002 2.8e-298 1028.1 656 81.6
Glyma.20G164300 Glycine max HOM05D005766 ORTHO05D007002 2.6e-296 1021.5 637 81.5
Ca_10701_v3 Cicer arietinum L. HOM05D005766 ORTHO05D007002 1.3e-274 949.5 635 78.0
Cfa016332 Carpinus fangiana HOM05D005766 ORTHO05D007002 6.5e-255 884.0 662 70.7
Prupe.2G304700 Prunus persica HOM05D005766 ORTHO05D007002 7.2e-254 880.6 652 70.6
arahy.Tifrunner.gnm1.ann1.8957SA Arachis hypogaea HOM05D005766 ORTHO05D007002 2.7e-253 878.6 650 71.2
Duzib205G0439 Durio zibethinus HOM05D005766 ORTHO05D007002 8.0e-253 877.1 645 70.5
arahy.Tifrunner.gnm1.ann1.M1FPNI Arachis hypogaea HOM05D005766 ORTHO05D007002 6.7e-252 874.0 616 73.7
TAR629G2087 Trochodendron aralioides HOM05D005766 ORTHO05D007002 5.7e-251 870.9 666 68.5
Thecc.03G188900 Theobroma cacao HOM05D005766 ORTHO05D007002 5.3e-249 864.4 647 69.2
GSVIVG01028775001 Vitis vinifera HOM05D005766 ORTHO05D007002 5.9e-248 860.9 661 67.6
CsaV3_3G021770 Cucumis sativus L. HOM05D005766 ORTHO05D007002 7.2e-246 854.0 638 67.9
Potri.015G026100 Populus trichocarpa HOM05D005766 ORTHO05D007002 9.4e-246 853.6 652 67.8
Hma1.2p1_0327F.1_g126600 Hydrangea macrophylla HOM05D005766 ORTHO05D007002 8.0e-245 850.5 624 69.2
CANSAT21G0601 Cannabis sativa HOM05D005766 ORTHO05D007002 1.0e-244 850.1 652 68.4
Gohir.A12G254600 Gossypium hirsutum HOM05D005766 ORTHO05D007002 8.8e-244 847.0 649 69.0
Nn1g01746 Nelumbo nucifera HOM05D005766 ORTHO05D007002 1.5e-243 846.3 666 65.9
Gohir.D12G254700 Gossypium hirsutum HOM05D005766 ORTHO05D007002 3.3e-243 845.1 649 68.7
Gorai.008G272400 Gossypium raimondii HOM05D005766 ORTHO05D007002 3.3e-243 845.1 649 68.9
MELO3C006963.2 Cucumis melo HOM05D005766 ORTHO05D007002 5.7e-243 844.3 635 68.2
PSO170G0163 Papaver somniferum HOM05D005766 ORTHO05D007002 3.7e-242 841.6 650 66.8
Cc02_g02130 Coffea canephora HOM05D005766 ORTHO05D007002 7.7e-240 833.9 634 67.4
Manes.14G020100 Manihot esculenta HOM05D005766 ORTHO05D007002 7.7e-240 833.9 616 69.3
MD07G1282600 Malus domestica HOM05D005766 ORTHO05D007002 2.5e-238 828.9 701 63.9
PGR004G1861 Punica granatum HOM05D005766 ORTHO05D007002 2.5e-238 828.9 647 67.9
Rhsim03G0196600 Rhododendron simsii HOM05D005766 ORTHO05D007002 9.4e-238 827.0 683 64.0
Aqoxy5G04049 Aquilegia oxysepala HOM05D005766 ORTHO05D007002 5.4e-233 811.2 660 64.4
MD01G1212200 Malus domestica HOM05D005766 ORTHO05D007002 1.3e-231 806.6 609 68.8
Sed0015140 Sechium edule HOM05D005766 ORTHO05D007002 1.3e-226 790.0 598 68.1
Migut.F00259 Erythranthe guttata HOM05D005766 ORTHO05D007002 1.7e-226 789.6 623 63.4
Eucgr.K00307 Eucalyptus grandis HOM05D005766 ORTHO05D007002 6.3e-226 787.7 652 63.0
FvH4_7g30700 Fragaria vesca HOM05D005766 ORTHO05D007002 7.8e-224 780.8 614 68.1
Lsat_1_v5_gn_2_61121 Lactuca sativa HOM05D005766 ORTHO05D007002 7.8e-224 780.8 648 63.1
vmacro06594 Vaccinium macrocarpon HOM05D005766 ORTHO05D007002 5.8e-219 764.6 735 58.2
ATR1131G022 Amborella trichopoda HOM05D005766 ORTHO05D007002 1.9e-217 759.6 667 59.8
Ah.07g206240 Amaranthus hybridus HOM05D005766 ORTHO05D007002 7.0e-217 757.7 677 59.4
Lalb_Chr06g0161411 Lupinus albus HOM05D005766 ORTHO05D007002 1.2e-216 756.9 486 80.2
ClCG05G008560 Citrullus lanatus HOM05D005766 ORTHO05D007002 2.3e-215 752.7 639 62.3
Haze_00083 Corylus avellana HOM05D005766 ORTHO05D007002 1.4e-209 733.4 761 57.0
CiPaw.05G259700 Carya illinoinensis HOM05D005766 ORTHO05D007002 1.9e-209 733.0 541 69.3
Medtr1g099380 Medicago truncatula HOM05D005766 ORTHO05D007002 2.8e-205 719.2 451 82.3
MBI07_g26934_MAGBIO Magnolia biondii HOM05D005766 ORTHO05D007002 3.2e-201 705.7 673 58.2
ECA238G0894 Erigeron canadensis HOM05D005766 ORTHO05D000105 3.5e-200 702.2 531 66.7
Lj1A1010T47 Lonicera japonica HOM05D005766 ORTHO05D007002 1.3e-199 700.3 654 60.1
Sabra15G0019200 Salix brachista HOM05D005766 ORTHO05D007002 1.6e-197 693.3 670 57.3
SalBow4G0986 Salvia bowleyana HOM05D005766 ORTHO05D007002 6.8e-196 688.0 609 59.8
Psat6g194920 Pisum sativum HOM05D005766 ORTHO05D007002 9.9e-195 684.1 414 82.4
TWI39G0494 Tripterygium wilfordii HOM05D005766 ORTHO05D007002 7.8e-192 674.5 629 59.3
Dinv28359 Davidia involucrata HOM05D005766 ORTHO05D007002 3.8e-186 655.6 547 64.0
FAN06G2288 Fragaria x ananassa HOM05D005766 ORTHO05D007002 1.7e-183 646.7 659 57.1
Hund04814 Selenicereus undatus HOM05D005766 ORTHO05D007002 7.3e-182 641.3 651 56.1
FAN10G0167 Fragaria x ananassa HOM05D005766 ORTHO05D007002 4.8e-181 638.6 683 55.1
FAN10G3945 Fragaria x ananassa HOM05D005766 ORTHO05D007002 6.2e-181 638.3 683 55.1
CSS0041625 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 1.1e-177 627.5 518 63.9
CSS0024367 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 1.6e-176 623.6 519 64.0
SGA_v2.0_scaffold192G40599 Striga asiatica HOM05D005766 ORTHO05D007002 4.6e-176 622.1 520 62.7
RcHm_v2.0_Chr1g0379661 Rosa chinensis HOM05D005766 ORTHO05D007002 9.6e-174 614.4 484 67.8
Mapoly0113s0021 Marchantia polymorpha HOM05D005766 ORTHO05D007002 3.7e-173 612.5 644 49.4
Cpa.g.sc3.14 Carica papaya HOM05D005766 ORTHO05D007002 1.9e-169 600.1 700 52.3
FAN03G2278 Fragaria x ananassa HOM05D005766 ORTHO05D007002 1.1e-166 590.9 709 50.8
Sc13g0009380 Simmondsia chinensis HOM05D005766 ORTHO05D007002 1.9e-161 573.5 479 65.3
HanXRQChr14g0440231 Helianthus annuus HOM05D005766 ORTHO05D007002 2.5e-161 573.2 335 81.2
Sopen12g011340 Solanum pennellii HOM05D005766 ORTHO05D007002 2.1e-160 570.1 445 66.5
EL10Ac3g05375 Beta vulgaris HOM05D005766 ORTHO05D007002 6.1e-160 568.5 439 67.2
HPP92_022503 Vanilla planifolia HOM05D005766 ORTHO05D007002 2.8e-157 559.7 489 60.5
Oeu003335.2 Olea europaea HOM05D005766 ORTHO05D007002 1.4e-153 547.4 456 62.9
Peaxi162Scf00023g00720 Petunia axillaris HOM05D005766 ORTHO05D007002 3.2e-153 546.2 537 57.9
Atru.chr1.315 Acer truncatum HOM05D005766 ORTHO05D007002 2.7e-152 543.1 342 79.2
QL11p056564 Quercus lobata HOM05D005766 ORTHO05D007002 1.8e-151 540.4 339 79.6
Ciclev10004767m.g Citrus clementina HOM05D005766 ORTHO05D007002 2.8e-149 533.1 503 59.6
CDE02G1402 Ceratophyllum demersum HOM05D001977 ORTHO05D002246 3.2e-137 493.0 385 65.7
FAN06G1885 Fragaria x ananassa HOM05D005766 ORTHO05D007002 9.7e-134 481.5 458 60.0
Glyma.09G181880 Glycine max HOM05D005766 ORTHO05D007002 2.4e-132 476.9 244 94.3
FAN01G0765 Fragaria x ananassa HOM05D005766 ORTHO05D007002 3.1e-132 476.5 458 60.0
Sabra15G0021700 Salix brachista HOM05D005766 ORTHO05D007002 1.0e-130 471.5 530 51.5
AagrBONN_evm.TU.Sc2ySwM_344.4899 Anthoceros agrestis HOM05D005766 ORTHO05D007002 6.8e-127 458.8 641 41.8
unitig_37.g11976 Utricularia gibba HOM05D005766 ORTHO05D007002 5.7e-126 455.7 613 44.0
SEGI_39054 Sequoiadendron giganteum HOM05D005766 ORTHO05D007002 1.2e-123 448.0 423 57.4
SMO203G0206 Selaginella moellendorffii HOM05D005766 ORTHO05D007002 3.6e-120 436.4 608 41.6
Nitab4.5_0014657g0010 Nicotiana tabacum HOM05D005766 ORTHO05D007002 1.4e-95 354.8 259 70.3
Psat6g194960 Pisum sativum HOM05D000038 ORTHO05D007763 1.4e-76 291.6 171 85.4
TWI39G0059 Tripterygium wilfordii HOM05D005766 ORTHO05D007002 2.4e-76 290.8 169 82.8
QL09p011984 Quercus lobata HOM05D005766 ORTHO05D007002 6.0e-75 286.2 206 72.3
Nitab4.5_0000157g0190 Nicotiana tabacum HOM05D005766 ORTHO05D007002 2.4e-71 274.2 265 57.7
Atru.chr1.316 Acer truncatum HOM05D005766 ORTHO05D007002 2.2e-69 267.7 170 77.1
CBR_g23333 Chara braunii HOM05D005766 ORTHO05D007002 6.4e-69 266.2 281 47.3
Actinidia08607 Actinidia chinensis HOM05D005766 ORTHO05D007002 1.6e-67 261.5 152 81.6
Lalb_Chr06g0161401 Lupinus albus HOM05D005766 ORTHO05D007002 2.3e-66 257.7 170 73.5
QL11p056568 Quercus lobata HOM05D005766 ORTHO05D007002 5.1e-66 256.5 170 72.9
Medtr1g099390 Medicago truncatula HOM05D005766 ORTHO05D007002 8.7e-66 255.8 172 73.3
Glyma.12G172150 Glycine max HOM05D005766 ORTHO05D007002 5.6e-65 253.1 131 93.9
RcHm_v2.0_Chr1g0379651 Rosa chinensis HOM05D005766 ORTHO05D007002 2.8e-64 250.8 170 71.8
DCAR_008901 Daucus carota HOM05D000149 ORTHO05D000076 1.3e-58 231.9 566 32.0
Zm00001eb221900 Zea mays HOM05D005766 ORTHO05D007002 5.1e-58 229.9 304 45.4
Glyma.03G072901 Glycine max HOM05D005766 ORTHO05D007002 9.6e-57 225.7 115 93.0
Sc13g0009390 Simmondsia chinensis HOM05D005766 ORTHO05D007002 2.8e-56 224.2 173 63.6
Nitab4.5_0001504g0110 Nicotiana tabacum HOM05D005766 ORTHO05D007002 1.1e-55 222.2 175 63.4
PGSC0003DMG400006615 Solanum tuberosum HOM05D005766 ORTHO05D007002 1.4e-55 221.9 170 61.8
Solyc12g021310.3 Solanum lycopersicum HOM05D005766 ORTHO05D007002 4.0e-55 220.3 170 61.2
Sopen12g011330 Solanum pennellii HOM05D005766 ORTHO05D007002 1.2e-54 218.8 170 60.0
Glyma.18G131400 Glycine max HOM05D005766 ORTHO05D007002 2.6e-54 217.6 170 65.3
Glyma.16G148650 Glycine max HOM05D005766 ORTHO05D007002 6.5e-53 213.0 107 94.4
HanXRQChr14g0440221 Helianthus annuus HOM05D005766 ORTHO05D007002 1.4e-52 211.8 170 61.2
Glyma.10G228301 Glycine max HOM05D005766 ORTHO05D007002 3.5e-51 207.2 100 98.0
Actinidia08606 Actinidia chinensis HOM05D005766 ORTHO05D007002 6.1e-43 179.9 211 49.8
QL09p011987 Quercus lobata HOM05D005766 ORTHO05D007002 1.5e-41 175.3 170 53.5
AUR62021076 Chenopodium quinoa HOM05D005766 ORTHO05D007002 1.1e-39 169.1 130 66.9
AUR62031455 Chenopodium quinoa HOM05D000038 ORTHO05D007763 2.4e-39 167.9 130 66.2
QL09p011981 Quercus lobata HOM05D005766 ORTHO05D007002 2.4e-39 167.9 102 80.4
Os05g0299300 Oryza sativa ssp. japonica HOM05D005766 ORTHO05D007002 1.7e-37 161.8 127 62.2
CAN.G71.5 Capsicum annuum HOM05D005766 ORTHO05D007002 1.9e-36 158.3 127 63.0
Nitab4.5_0000327g0060 Nicotiana tabacum HOM05D005766 ORTHO05D007002 2.7e-35 154.5 90 78.9
PRCOL_00006853 Prasinoderma coloniale HOM05D005766 ORTHO05D007002 8.8e-34 149.4 870 22.2
arahy.Tifrunner.gnm1.ann1.DV56VC Arachis hypogaea HOM05D005766 ORTHO05D007002 1.1e-33 149.1 126 57.1
Duzib084G0599 Durio zibethinus HOM05D005766 ORTHO05D007002 3.1e-31 141.0 111 69.4
COL.COLO4_30253 Corchorus olitorius HOM05D005766 ORTHO05D007002 2.8e-24 117.9 192 44.3
Cre01.g002700 Chlamydomonas reinhardtii HOM05D005766 ORTHO05D007002 4.8e-24 117.1 181 32.6
Actinidia08608 Actinidia chinensis HOM05D005766 ORTHO05D007002 1.8e-23 115.2 68 76.5
CSS0010184 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 2.4e-23 114.8 79 70.9
CSS0002634 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 2.0e-22 111.7 67 79.1
Cfa000854 Carpinus fangiana HOM05D005766 ORTHO05D007002 1.0e-21 109.4 78 70.5
arahy.Tifrunner.gnm1.ann1.XWQU4Z Arachis hypogaea HOM05D005766 ORTHO05D007002 2.7e-19 101.3 66 66.7
TPR.G27363 Trifolium pratense HOM05D005766 ORTHO05D007002 4.7e-19 100.5 58 79.3
arahy.Tifrunner.gnm1.ann1.118EZC Arachis hypogaea HOM05D005766 ORTHO05D007002 7.7e-14 83.2 53 69.8
Peaxi162Scf00603g00414 Petunia axillaris HOM05D007579 ORTHO05D000285 1.2e-11 75.9 60 61.7
arahy.Tifrunner.gnm1.ann1.AW6XP7 Arachis hypogaea HOM05D005766 ORTHO05D007002 2.7e-11 74.7 51 62.7
RcHm_v2.0_Chr7g0190461 Rosa chinensis HOM05D002332 ORTHO05D002509 1.2e-09 69.3 206 28.6
Glyma.08G028700 Glycine max HOM05D005766 ORTHO05D007002 2.6e-09 68.2 38 81.6
MD06G1143900 Malus domestica HOM05D002332 ORTHO05D002509 4.4e-09 67.4 221 25.8
FAN08G0156 Fragaria x ananassa HOM05D002332 ORTHO05D002509 3.7e-08 64.3 206 27.7
FvH4_5g07940 Fragaria vesca HOM05D002332 ORTHO05D002509 6.3e-08 63.5 199 28.1
FAN18G1292 Fragaria x ananassa HOM05D002332 ORTHO05D002509 6.3e-08 63.5 199 28.1
Medtr1g034785 Medicago truncatula HOM05D002332 ORTHO05D002509 8.3e-08 63.2 209 25.8
arahy.Tifrunner.gnm1.ann1.DC2VU6 Arachis hypogaea HOM05D000702 ORTHO05D007002 1.1e-07 62.8 207 29.5
Haze_07236 Corylus avellana HOM05D002332 ORTHO05D002509 3.1e-07 61.2 197 26.4
Medtr1g097140 Medicago truncatula HOM05D003913 ORTHO05D004803 4.1e-07 60.8 233 26.2
SalBow2G0244 Salvia bowleyana HOM05D004669 ORTHO05D005767 5.4e-07 60.5 218 24.3
Psat6g188560 Pisum sativum HOM05D000168 ORTHO05D004803 7.0e-07 60.1 227 23.3
ECA233G2827 Erigeron canadensis HOM05D000836 ORTHO05D000709 9.1e-07 59.7 272 25.0
Gohir.D08G042200 Gossypium hirsutum HOM05D005813 ORTHO05D007310 9.1e-07 59.7 349 20.3
GSVIVG01035793001 Vitis vinifera HOM05D000836 ORTHO05D000709 9.1e-07 59.7 267 23.6
BraA09t41176Z Brassica rapa HOM05D004736 ORTHO05D006424 2.0e-06 58.5 235 23.4
EL10Ac5g10958 Beta vulgaris HOM05D003913 ORTHO05D004803 2.7e-06 58.2 227 23.3
Cfa018843 Carpinus fangiana HOM05D002332 ORTHO05D002509 2.7e-06 58.2 197 25.9
Gohir.A08G031100 Gossypium hirsutum HOM05D005813 ORTHO05D007310 2.7e-06 58.2 349 20.3
Oeu049881.1 Olea europaea HOM05D005766 ORTHO05D007002 2.7e-06 58.2 55 50.9
Thecc.03G126600 Theobroma cacao HOM05D002332 ORTHO05D002509 2.7e-06 58.2 167 26.3
TWI39G1032 Tripterygium wilfordii HOM05D002332 ORTHO05D002509 2.7e-06 58.2 201 25.4
Ah.08g222720 Amaranthus hybridus HOM05D006479 ORTHO05D008310 3.5e-06 57.8 308 22.1
Duzib192G0063 Durio zibethinus HOM05D004669 ORTHO05D005767 3.5e-06 57.8 218 23.4
GSVIVG01008513001 Vitis vinifera HOM05D002332 ORTHO05D002509 3.5e-06 57.8 199 25.1
ATR0686G098 Amborella trichopoda HOM05D002332 ORTHO05D002509 5.9e-06 57.0 161 26.1
Gohir.A03G093900 Gossypium hirsutum HOM05D000836 ORTHO05D000709 5.9e-06 57.0 234 24.4
Gohir.D08G054000 Gossypium hirsutum HOM05D005544 ORTHO05D007303 5.9e-06 57.0 268 23.5
Thecc.06G074100 Theobroma cacao HOM05D004669 ORTHO05D005767 5.9e-06 57.0 218 23.4
arahy.Tifrunner.gnm1.ann1.3HS4ZY Arachis hypogaea HOM05D005766 ORTHO05D007002 7.7e-06 56.6 39 71.8
Gohir.D02G123100 Gossypium hirsutum HOM05D000836 ORTHO05D000709 7.7e-06 56.6 234 24.4
Gorai.004G054300 Gossypium raimondii HOM05D005544 ORTHO05D007303 7.7e-06 56.6 268 23.5


User provided reference genes

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