Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0015732 Lotus japonicus HOM05D000003 ORTHO05D000004 1.2e-82 309.7 144 100.0
Lj4g0009536 Lotus japonicus HOM05D000003 ORTHO05D000004 6.8e-30 134.4 111 51.4
Lj5g0002145 Lotus japonicus HOM05D000003 ORTHO05D000167 4.4e-29 131.7 119 47.1
Lj3g0008362 Lotus japonicus HOM05D000003 ORTHO05D000004 1.8e-14 83.2 101 37.6
TPR.G29120 Trifolium pratense HOM05D000003 ORTHO05D000004 2.9e-12 75.9 102 33.3
CANSAT78G2124 Cannabis sativa HOM05D000003 ORTHO05D000004 4.2e-11 72.0 132 30.3
Manes.10G073050 Manihot esculenta HOM05D000003 ORTHO05D000167 1.2e-10 70.5 99 35.4
Manes.12G101201 Manihot esculenta HOM05D000003 ORTHO05D000004 1.2e-10 70.5 99 34.3
TPR.G36801 Trifolium pratense HOM05D000003 ORTHO05D000004 2.7e-10 69.3 101 28.7
LjContig00141g0007313 Lotus japonicus HOM05D000003 ORTHO05D000004 4.6e-10 68.6 111 31.5
CANSAT56G4532 Cannabis sativa HOM05D000003 ORTHO05D000167 7.9e-10 67.8 111 34.2
Manes.16G107751 Manihot esculenta HOM05D000003 ORTHO05D000004 7.9e-10 67.8 99 33.3
CANSAT64G0950 Cannabis sativa HOM05D000003 ORTHO05D000167 1.8e-09 66.6 101 29.7
Lj5g0023125 Lotus japonicus HOM05D000003 ORTHO05D000004 1.8e-09 66.6 101 38.6
TAR346G0003 Trochodendron aralioides HOM05D000003 ORTHO05D000004 2.3e-09 66.2 118 33.9
Lj5g0012138 Lotus japonicus HOM05D000003 ORTHO05D000004 5.1e-09 65.1 99 38.4
Lj1g0015020 Lotus japonicus HOM05D000003 ORTHO05D001406 6.7e-09 64.7 96 33.3
TAR131G0003 Trochodendron aralioides HOM05D000003 ORTHO05D011990 6.7e-09 64.7 117 36.8
CANSAT56G1073 Cannabis sativa HOM05D000003 ORTHO05D000004 1.1e-08 63.9 98 32.7
AUR62035533 Chenopodium quinoa HOM05D005239 ORTHO05D006698 1.1e-08 63.9 111 31.5
CANSAT56G4250 Cannabis sativa HOM05D000003 ORTHO05D000004 1.5e-08 63.5 100 30.0
CSS0003020 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000167 1.9e-08 63.2 114 27.2
CANSAT64G0681 Cannabis sativa HOM05D000003 ORTHO05D000167 1.9e-08 63.2 101 29.7
MD06G1107000 Malus domestica HOM05D000003 ORTHO05D000004 1.9e-08 63.2 142 27.5
MD08G1205700 Malus domestica HOM05D000003 ORTHO05D000004 1.9e-08 63.2 147 28.6
CANSAT64G0360 Cannabis sativa HOM05D000003 ORTHO05D000004 5.6e-08 61.6 97 36.1
CANSAT64G1882 Cannabis sativa HOM05D000003 ORTHO05D000167 9.6e-08 60.8 97 35.1
TAR273G0004 Trochodendron aralioides HOM05D000003 ORTHO05D000004 9.6e-08 60.8 118 32.2
CANSAT80G2664 Cannabis sativa HOM05D000003 ORTHO05D000167 1.3e-07 60.5 97 36.1
TWI56G1451 Tripterygium wilfordii HOM05D000003 ORTHO05D000167 1.6e-07 60.1 96 30.2
QL02p078700 Quercus lobata HOM05D008417 ORTHO05D010741 2.8e-07 59.3 120 28.3
LjContig00310g0023480 Lotus japonicus HOM05D000003 ORTHO05D000004 3.7e-07 58.9 99 33.3
PSO421G0601 Papaver somniferum HOM05D000003 ORTHO05D001026 3.7e-07 58.9 106 30.2
Aa31LG5G20940 Aethionema arabicum HOM05D000003 ORTHO05D000004 4.8e-07 58.5 105 34.3
PSO063G6740 Papaver somniferum HOM05D000003 ORTHO05D001026 4.8e-07 58.5 116 32.8
PSO339G3857 Papaver somniferum HOM05D000003 ORTHO05D001026 4.8e-07 58.5 115 30.4
Atru.chr11.133 Acer truncatum HOM05D000003 ORTHO05D000004 6.2e-07 58.2 143 30.8
Atru.chr11.1735 Acer truncatum HOM05D000003 ORTHO05D000126 8.1e-07 57.8 114 29.8
Atru.chr4.2116 Acer truncatum HOM05D000003 ORTHO05D000004 8.1e-07 57.8 114 32.5
Lj2g0015378 Lotus japonicus HOM05D000003 ORTHO05D000925 8.1e-07 57.8 101 31.7
SHI39371 Sapria himalayana HOM05D000003 ORTHO05D000167 1.1e-06 57.4 75 32.0
Atru.chr6.785 Acer truncatum HOM05D000003 ORTHO05D000004 1.4e-06 57.0 114 29.8
EL10Ac9g21339 Beta vulgaris HOM05D000003 ORTHO05D000167 1.4e-06 57.0 96 32.3
PSO017G1907 Papaver somniferum HOM05D000003 ORTHO05D001026 1.4e-06 57.0 106 27.4
PSO528G0012 Papaver somniferum HOM05D000003 ORTHO05D006738 1.4e-06 57.0 102 34.3
TPR.G7655 Trifolium pratense HOM05D000003 ORTHO05D000004 1.4e-06 57.0 56 39.3
CANSAT80G1540 Cannabis sativa HOM05D000003 ORTHO05D000004 1.8e-06 56.6 96 27.1
FvH4_7g06171 Fragaria vesca HOM05D000003 ORTHO05D000006 1.8e-06 56.6 106 31.1
TPR.G14500 Trifolium pratense HOM05D000003 ORTHO05D000651 1.8e-06 56.6 117 30.8
CANSAT21G2614 Cannabis sativa HOM05D000003 ORTHO05D000167 2.4e-06 56.2 96 27.1
FvH4_5g12241 Fragaria vesca HOM05D000003 ORTHO05D000004 2.4e-06 56.2 101 30.7
QL12p024011 Quercus lobata HOM05D000003 ORTHO05D000004 2.4e-06 56.2 113 28.3
TPR.G35485 Trifolium pratense HOM05D039754 ORTHO05D015712 2.4e-06 56.2 82 31.7
EL10Ac2g04418 Beta vulgaris HOM05D000003 ORTHO05D000004 3.1e-06 55.8 102 28.4
CANSAT25G1969 Cannabis sativa HOM05D000003 ORTHO05D000004 3.1e-06 55.8 114 28.1
PSO675G3947 Papaver somniferum HOM05D000003 ORTHO05D000004 3.1e-06 55.8 99 27.3
Atru.chr3.1772 Acer truncatum HOM05D000003 ORTHO05D000004 4.0e-06 55.5 113 31.0
Aa31LG8G16480 Aethionema arabicum HOM05D000003 ORTHO05D000004 4.0e-06 55.5 112 32.1
COL.COLO4_07290 Corchorus olitorius HOM05D000003 ORTHO05D000004 4.0e-06 55.5 119 27.7
EL10Ac1g01349 Beta vulgaris HOM05D003468 ORTHO05D002806 5.3e-06 55.1 105 32.4
CANSAT64G2500 Cannabis sativa HOM05D000003 ORTHO05D000167 5.3e-06 55.1 96 26.0
CANSAT78G0561 Cannabis sativa HOM05D000003 ORTHO05D000167 5.3e-06 55.1 113 26.5
TAR536G0009 Trochodendron aralioides HOM05D000003 ORTHO05D000004 5.3e-06 55.1 129 31.0
Aa31LG7G3330 Aethionema arabicum HOM05D000003 ORTHO05D000004 6.9e-06 54.7 117 28.2
CSS0013596 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D007254 6.9e-06 54.7 78 34.6
PSO210G5940 Papaver somniferum HOM05D000003 ORTHO05D000004 6.9e-06 54.7 115 26.1
CANSAT56G0879 Cannabis sativa HOM05D000003 ORTHO05D000004 9.0e-06 54.3 96 27.1


User provided reference genes

Program Settings