Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0015401 Lotus japonicus HOM05D005743 ORTHO05D007031 1.6e-305 1052.0 530 100.0
Ca_10331_v3 Cicer arietinum L. HOM05D005743 ORTHO05D007031 1.7e-259 899.0 524 87.2
VMungo0720G3165 Vigna mungo HOM05D005743 ORTHO05D007031 1.7e-259 899.0 530 85.8
Phvul.007G147000 Phaseolus vulgaris HOM05D005743 ORTHO05D007031 3.8e-259 897.9 530 85.1
Medtr1g088430 Medicago truncatula HOM05D005743 ORTHO05D007031 4.6e-257 891.0 528 86.2
Glyma.10G018000 Glycine max HOM05D005743 ORTHO05D007031 2.3e-256 888.6 530 84.9
arahy.Tifrunner.gnm1.ann1.39WPG8 Arachis hypogaea HOM05D005743 ORTHO05D007031 4.3e-255 884.4 531 84.2
arahy.Tifrunner.gnm1.ann1.V1RZF6 Arachis hypogaea HOM05D005743 ORTHO05D007031 2.1e-254 882.1 531 84.0
TPR.G33974 Trifolium pratense HOM05D005743 ORTHO05D007031 2.4e-253 878.6 528 85.4
COL.COLO4_23341 Corchorus olitorius HOM05D005743 ORTHO05D007031 4.2e-234 814.7 534 77.9
Ciclev10019600m.g Citrus clementina HOM05D005743 ORTHO05D007031 3.5e-233 811.6 529 77.1
Hma1.2p1_0491F.1_g164590 Hydrangea macrophylla HOM05D005743 ORTHO05D007031 3.5e-233 811.6 530 77.0
Dinv19686 Davidia involucrata HOM05D005743 ORTHO05D007031 1.9e-231 805.8 530 77.5
Thecc.01G301000 Theobroma cacao HOM05D005743 ORTHO05D007031 1.3e-230 803.1 533 77.3
Atru.chr5.1142 Acer truncatum HOM05D005743 ORTHO05D007031 1.4e-229 799.7 532 75.9
TAR362G0334 Trochodendron aralioides HOM05D005743 ORTHO05D007031 1.2e-228 796.6 531 76.3
MD03G1288600 Malus domestica HOM05D005743 ORTHO05D007031 2.0e-228 795.8 532 76.1
Prupe.8G261900 Prunus persica HOM05D005743 ORTHO05D007031 2.6e-228 795.4 533 76.5
Potri.014G128600 Populus trichocarpa HOM05D005743 ORTHO05D007031 1.3e-227 793.1 528 76.3
Cfa005908 Carpinus fangiana HOM05D005743 ORTHO05D007031 2.9e-227 792.0 537 76.0
CANSAT25G1370 Cannabis sativa HOM05D005743 ORTHO05D007031 6.5e-227 790.8 535 75.3
Cpa.g.sc9.258 Carica papaya HOM05D005743 ORTHO05D007031 8.5e-227 790.4 527 75.7
PSO170G2277 Papaver somniferum HOM05D005743 ORTHO05D007031 8.5e-227 790.4 534 74.9
QL12p028420 Quercus lobata HOM05D005743 ORTHO05D007031 8.5e-227 790.4 528 75.4
MBI18_g06031_MAGBIO Magnolia biondii HOM05D005743 ORTHO05D007031 4.2e-226 788.1 529 75.8
CSS0024650 Camellia sinensis var. sinensis HOM05D005743 ORTHO05D007031 5.5e-226 787.7 530 76.2
Manes.01G219600 Manihot esculenta HOM05D005743 ORTHO05D007031 9.3e-226 786.9 529 74.7
TWI59G0198 Tripterygium wilfordii HOM05D005743 ORTHO05D007031 7.9e-225 783.9 529 74.5
PSO407G0387 Papaver somniferum HOM05D005743 ORTHO05D007031 3.9e-224 781.6 534 74.3
Aqoxy2G02938 Aquilegia oxysepala HOM05D005743 ORTHO05D007031 1.1e-223 780.0 530 74.9
Nitab4.5_0005805g0040 Nicotiana tabacum HOM05D005743 ORTHO05D007031 1.9e-223 779.2 531 74.4
CsaV3_4G000840 Cucumis sativus L. HOM05D005743 ORTHO05D007031 2.2e-222 775.8 532 74.8
Lj2A1195G24 Lonicera japonica HOM05D005743 ORTHO05D007031 3.7e-222 775.0 530 73.6
Duzib138G1616 Durio zibethinus HOM05D005743 ORTHO05D007031 4.8e-222 774.6 533 75.0
FAN15G2676 Fragaria x ananassa HOM05D005743 ORTHO05D007031 6.3e-222 774.2 533 75.0
FAN20G0637 Fragaria x ananassa HOM05D005743 ORTHO05D007031 8.2e-222 773.9 530 75.7
MELO3C017953.2 Cucumis melo HOM05D005743 ORTHO05D007031 1.4e-221 773.1 532 75.0
Nitab4.5_0002470g0070 Nicotiana tabacum HOM05D005743 ORTHO05D007031 1.4e-221 773.1 529 73.5
Oeu046676.1 Olea europaea HOM05D005743 ORTHO05D007031 2.4e-221 772.3 530 74.7
Sed0000130 Sechium edule HOM05D005743 ORTHO05D007031 6.9e-221 770.8 531 74.6
Sopen06g003890 Solanum pennellii HOM05D005743 ORTHO05D007031 6.9e-221 770.8 530 73.4
Cc01_g20880 Coffea canephora HOM05D005743 ORTHO05D007031 9.0e-221 770.4 527 73.8
Migut.D00150 Erythranthe guttata HOM05D005743 ORTHO05D007031 9.0e-221 770.4 528 73.7
CAN.G1989.8 Capsicum annuum HOM05D005743 ORTHO05D007031 2.0e-220 769.2 531 74.0
Solyc06g009130.3 Solanum lycopersicum HOM05D005743 ORTHO05D007031 3.4e-220 768.5 530 73.6
RcHm_v2.0_Chr6g0294071 Rosa chinensis HOM05D005743 ORTHO05D007031 4.5e-220 768.1 534 73.8
Gorai.007G127900 Gossypium raimondii HOM05D005743 ORTHO05D007031 1.3e-219 766.5 533 73.4
PGR044G1461 Punica granatum HOM05D005743 ORTHO05D007031 2.9e-219 765.4 591 68.4
Rhsim01G0285500 Rhododendron simsii HOM05D005743 ORTHO05D007031 3.8e-219 765.0 530 74.7
GSVIVG01028023001 Vitis vinifera HOM05D005743 ORTHO05D007031 5.0e-219 764.6 527 73.8
THA.LOC104827666 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 1.6e-217 759.6 527 71.5
THA.LOC104817489 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 6.1e-217 757.7 526 71.3
Gohir.D11G119400 Gossypium hirsutum HOM05D005743 ORTHO05D007031 3.9e-216 755.0 531 72.7
Sabra14G0095500 Salix brachista HOM05D005743 ORTHO05D007031 3.3e-215 751.9 545 70.8
ClCG10G010970 Citrullus lanatus HOM05D005743 ORTHO05D007031 7.4e-215 750.7 564 69.9
AL4G47180 Arabidopsis lyrata HOM05D005743 ORTHO05D007031 9.7e-215 750.4 530 71.9
Carub.0004s3033 Capsella rubella HOM05D005743 ORTHO05D007031 1.7e-214 749.6 530 72.3
AT2G47600 Arabidopsis thaliana HOM05D005743 ORTHO05D007031 6.3e-214 747.7 532 72.2
Thhalv10001391m.g Eutrema salsugineum HOM05D005743 ORTHO05D007031 6.3e-214 747.7 530 72.3
CARHR143000 Cardamine hirsuta HOM05D005743 ORTHO05D007031 5.3e-213 744.6 529 71.8
Eucgr.K03487 Eucalyptus grandis HOM05D005743 ORTHO05D007031 9.1e-213 743.8 526 72.6
C04p00250 Brassica napus HOM05D005743 ORTHO05D007031 1.2e-212 743.4 530 71.3
BolC4t21668H Brassica oleracea HOM05D005743 ORTHO05D007031 1.2e-212 743.4 530 71.3
BraA05t19031Z Brassica rapa HOM05D005743 ORTHO05D007031 2.0e-212 742.7 530 71.7
Lalb_Chr06g0166491 Lupinus albus HOM05D005743 ORTHO05D007031 2.0e-212 742.7 552 71.4
Sc05g0003820 Simmondsia chinensis HOM05D005743 ORTHO05D007031 2.6e-212 742.3 525 71.8
CAN.G1280.3 Capsicum annuum HOM05D005743 ORTHO05D007031 3.4e-212 741.9 533 72.2
A05p00330 Brassica napus HOM05D005743 ORTHO05D007031 5.9e-212 741.1 530 71.5
Aa31LG1G28940 Aethionema arabicum HOM05D005743 ORTHO05D007031 1.0e-211 740.3 528 71.4
AUR62025577 Chenopodium quinoa HOM05D005743 ORTHO05D007031 2.2e-211 739.2 530 71.3
AUR62008667 Chenopodium quinoa HOM05D005743 ORTHO05D007031 1.4e-210 736.5 530 70.6
FvH4_2g25770 Fragaria vesca HOM05D005743 ORTHO05D007031 3.6e-209 731.9 490 77.8
Peaxi162Scf00399g00716 Petunia axillaris HOM05D005743 ORTHO05D007031 4.7e-209 731.5 505 73.1
SalBow2G1764 Salvia bowleyana HOM05D005743 ORTHO05D007031 6.1e-209 731.1 532 69.9
Migut.N01507 Erythranthe guttata HOM05D005743 ORTHO05D007031 2.3e-208 729.2 529 70.3
Migut.O00421 Erythranthe guttata HOM05D005743 ORTHO05D007031 6.7e-208 727.6 529 70.5
HanXRQChr13g0413001 Helianthus annuus HOM05D005743 ORTHO05D007031 6.7e-208 727.6 527 69.3
SalBow3G4402 Salvia bowleyana HOM05D005743 ORTHO05D007031 5.7e-207 724.5 532 70.3
DCAR_005790 Daucus carota HOM05D005743 ORTHO05D007031 1.3e-206 723.4 549 68.7
HPP92_016082 Vanilla planifolia HOM05D005743 ORTHO05D007031 1.4e-205 719.9 522 70.3
FAN24G1083 Fragaria x ananassa HOM05D005743 ORTHO05D007031 3.1e-205 718.8 489 76.3
CDE02G2026 Ceratophyllum demersum HOM05D005743 ORTHO05D007031 4.1e-205 718.4 527 69.1
Eucgr.K03488 Eucalyptus grandis HOM05D005743 ORTHO05D007031 3.8e-203 711.8 476 76.3
EL10Ac7g17510 Beta vulgaris HOM05D005743 ORTHO05D007031 5.0e-203 711.4 522 70.5
Hund18172 Selenicereus undatus HOM05D005743 ORTHO05D007031 8.5e-203 710.7 530 67.7
Sc05g0003780 Simmondsia chinensis HOM05D005743 ORTHO05D007031 2.5e-202 709.1 524 69.5
SGA_v2.0_scaffold198G41143 Striga asiatica HOM05D005743 ORTHO05D007031 1.6e-201 706.4 551 67.2
Os11g0660000 Oryza sativa ssp. japonica HOM05D005743 ORTHO05D007031 2.7e-201 705.7 535 67.1
Lsat_1_v5_gn_5_191280 Lactuca sativa HOM05D005743 ORTHO05D007031 1.0e-200 703.7 528 68.6
Psat6g165240 Pisum sativum HOM05D005743 ORTHO05D007031 2.2e-198 696.0 409 86.6
ECA248G2514 Erigeron canadensis HOM05D005743 ORTHO05D007031 2.9e-195 685.6 493 71.2
Ah.08g213420 Amaranthus hybridus HOM05D005743 ORTHO05D007031 2.7e-193 679.1 528 66.7
Actinidia24820 Actinidia chinensis HOM05D005743 ORTHO05D007031 6.1e-193 677.9 491 72.9
BcaB02g08759 Brassica carinata HOM05D005743 ORTHO05D007031 5.7e-191 671.4 528 66.3
RcHm_v2.0_Chr6g0294081 Rosa chinensis HOM05D005743 ORTHO05D007031 2.7e-188 662.5 536 66.4
Haze_04942 Corylus avellana HOM05D005743 ORTHO05D007031 1.3e-182 643.7 578 63.8
SGA_v2.0_scaffold1G00362 Striga asiatica HOM05D005743 ORTHO05D007031 1.2e-177 627.1 501 66.9
Nn4g25787 Nelumbo nucifera HOM05D005743 ORTHO05D007031 2.3e-176 622.9 412 76.2
FAN27G1322 Fragaria x ananassa HOM05D005743 ORTHO05D007031 2.6e-167 592.8 406 74.9
Peaxi162Scf00001g04234 Petunia axillaris HOM05D005743 ORTHO05D007031 1.8e-128 463.8 534 50.7
Nitab4.5_0001879g0130 Nicotiana tabacum HOM05D005743 ORTHO05D007031 3.9e-123 446.0 542 47.4
vmacro15016 Vaccinium macrocarpon HOM05D005743 ORTHO05D007031 1.0e-118 431.4 356 66.9
AagrBONN_evm.TU.Sc2ySwM_344.5359 Anthoceros agrestis HOM05D005743 ORTHO05D007031 7.1e-117 425.2 533 43.7
Pp3c1_39250 Physcomitrium patens HOM05D005743 ORTHO05D007031 3.3e-114 416.4 551 43.2
Mapoly0134s0038 Marchantia polymorpha HOM05D005743 ORTHO05D007031 1.7e-110 404.1 532 44.2
Gohir.A11G114301 Gossypium hirsutum HOM05D005743 ORTHO05D007031 1.6e-108 397.5 292 69.2
CiPaw.08G094900 Carya illinoinensis HOM05D005743 ORTHO05D007031 4.6e-108 396.0 292 69.9
Pp3c2_6060 Physcomitrium patens HOM05D005743 ORTHO05D007031 1.8e-107 394.0 547 41.9
ATR0706G014 Amborella trichopoda HOM05D005743 ORTHO05D007031 3.0e-107 393.3 259 75.7
Hund18173 Selenicereus undatus HOM05D005743 ORTHO05D007031 3.4e-103 379.8 269 70.6
Zm00001eb165450 Zea mays HOM05D005743 ORTHO05D007031 1.1e-101 374.8 327 62.4
AagrBONN_evm.TU.Sc2ySwM_368.1084 Anthoceros agrestis HOM05D005743 ORTHO05D007031 8.8e-99 365.2 555 37.5
SMO351G0556 Selaginella moellendorffii HOM05D005743 ORTHO05D007031 6.1e-84 315.8 406 42.4
THA.LOC104798829 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 1.2e-74 285.0 176 77.8
Actinidia26720 Actinidia chinensis HOM05D005743 ORTHO05D007031 1.1e-72 278.5 317 53.6
CBR_g22437 Chara braunii HOM05D005743 ORTHO05D007031 1.0e-70 271.9 625 32.6
Os02g0644900 Oryza sativa ssp. japonica HOM05D005743 ORTHO05D007031 1.2e-58 231.9 228 55.7
Nitab4.5_0002433g0030 Nicotiana tabacum HOM05D005743 ORTHO05D007031 5.4e-56 223.0 270 50.0
SEGI_24798 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 6.6e-54 216.1 162 70.4
EL10Ac3g06395 Beta vulgaris HOM05D005743 ORTHO05D007031 2.8e-52 210.7 152 69.7
Actinidia21045 Actinidia chinensis HOM05D005743 ORTHO05D007031 4.9e-49 199.9 150 67.3
Zm00001eb407450 Zea mays HOM05D005743 ORTHO05D007031 1.6e-47 194.9 174 59.2
PRCOL_00004461 Prasinoderma coloniale HOM05D005743 ORTHO05D007031 1.5e-45 188.3 701 25.5
SEGI_13510 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 2.6e-42 177.6 115 75.7
Rhsim05G0173900 Rhododendron simsii HOM05D005743 ORTHO05D007031 1.0e-38 165.6 118 72.9
Actinidia21044 Actinidia chinensis HOM05D005743 ORTHO05D007031 1.1e-35 155.6 123 65.0
Nitab4.5_0002433g0040 Nicotiana tabacum HOM05D005743 ORTHO05D007031 4.0e-27 127.1 97 63.9
Glyma.02G017550 Glycine max HOM05D005743 ORTHO05D007031 1.3e-25 122.1 77 79.2
Cre11.g479600 Chlamydomonas reinhardtii HOM05D005743 ORTHO05D007031 1.4e-24 118.6 179 38.5
SEGI_31813 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 1.3e-20 105.5 91 56.0
SEGI_40223 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 3.1e-19 100.9 108 50.0
ATR0706G260 Amborella trichopoda HOM05D005743 ORTHO05D007031 5.4e-16 90.1 51 88.2
PRCOL_00000753 Prasinoderma coloniale HOM05D018879 ORTHO05D018932 7.6e-10 69.7 111 36.9
Medtr7g112660 Medicago truncatula HOM05D005743 ORTHO05D007031 6.4e-09 66.6 52 71.2
MCO02G055 Micromonas commoda HOM05D018879 ORTHO05D018932 9.3e-08 62.8 129 34.1
MCO03G398 Micromonas commoda HOM05D018879 ORTHO05D018932 1.2e-07 62.4 382 23.6
Medtr3g062620 Medicago truncatula HOM05D005743 ORTHO05D007031 4.6e-07 60.5 40 77.5


User provided reference genes

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