Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0015320 Lotus japonicus HOM05D004179 ORTHO05D005248 0.0e+00 1109.0 583 100.0
Ca_11083_v3 Cicer arietinum L. HOM05D004179 ORTHO05D005248 1.6e-274 949.1 584 86.8
Psat6g219600 Pisum sativum HOM05D004179 ORTHO05D005248 2.8e-271 938.3 587 86.0
Medtr1g107485 Medicago truncatula HOM05D004179 ORTHO05D005248 3.4e-269 931.4 589 84.7
Lalb_Chr06g0165491 Lupinus albus HOM05D004179 ORTHO05D005248 9.8e-269 929.9 593 83.3
TPR.G13858 Trifolium pratense HOM05D004179 ORTHO05D005248 2.4e-267 925.2 591 84.3
arahy.Tifrunner.gnm1.ann1.W9R5L5 Arachis hypogaea HOM05D004179 ORTHO05D005248 1.6e-266 922.5 580 84.7
arahy.Tifrunner.gnm1.ann1.T2YEM3 Arachis hypogaea HOM05D004179 ORTHO05D005248 1.3e-265 919.5 580 84.5
VMungo0720G2067 Vigna mungo HOM05D004179 ORTHO05D005248 3.0e-265 918.3 578 83.4
Phvul.007G039000 Phaseolus vulgaris HOM05D004179 ORTHO05D005248 9.5e-264 913.3 581 83.0
TWI79G0140 Tripterygium wilfordii HOM05D004179 ORTHO05D005248 8.3e-260 900.2 585 81.5
Prupe.8G134200 Prunus persica HOM05D004179 ORTHO05D005248 1.7e-257 892.5 587 80.4
Cfa004570 Carpinus fangiana HOM05D004179 ORTHO05D005248 2.3e-257 892.1 586 80.5
Ciclev10028086m.g Citrus clementina HOM05D004179 ORTHO05D005248 3.9e-257 891.3 584 80.8
Haze_10162 Corylus avellana HOM05D004179 ORTHO05D005248 5.1e-257 891.0 602 79.4
Manes.07G069700 Manihot esculenta HOM05D004179 ORTHO05D005248 1.6e-255 885.9 585 80.9
PGR042G2277 Punica granatum HOM05D004179 ORTHO05D005248 8.1e-255 883.6 589 80.5
FvH4_2g05320 Fragaria vesca HOM05D004179 ORTHO05D005248 6.8e-254 880.6 584 79.8
Hma1.2p1_0796F.1_g219140 Hydrangea macrophylla HOM05D004179 ORTHO05D005248 1.2e-253 879.8 537 85.7
Gohir.D02G207400 Gossypium hirsutum HOM05D004179 ORTHO05D005248 2.0e-253 879.0 582 79.4
Potri.009G096700 Populus trichocarpa HOM05D004179 ORTHO05D005248 2.0e-253 879.0 591 80.4
THA.LOC104812909 Tarenaya hassleriana HOM05D004179 ORTHO05D005248 4.4e-253 877.9 586 79.9
CANSAT25G3047 Cannabis sativa HOM05D004179 ORTHO05D005248 5.8e-253 877.5 584 80.5
Gorai.005G235300 Gossypium raimondii HOM05D004179 ORTHO05D005248 5.8e-253 877.5 581 79.2
CANSAT25G1226 Cannabis sativa HOM05D004179 ORTHO05D005248 7.6e-253 877.1 584 80.5
Eucgr.G01360 Eucalyptus grandis HOM05D004179 ORTHO05D005248 7.6e-253 877.1 589 79.6
Gohir.A03G186600 Gossypium hirsutum HOM05D004179 ORTHO05D005248 1.3e-252 876.3 582 79.0
TAR628G1050 Trochodendron aralioides HOM05D004179 ORTHO05D005248 3.7e-252 874.8 586 78.8
CiPaw.05G010800 Carya illinoinensis HOM05D004179 ORTHO05D005248 4.9e-252 874.4 539 85.2
Potri.001G301000 Populus trichocarpa HOM05D004179 ORTHO05D005248 1.4e-251 872.8 591 79.0
GSVIVG01003166001 Vitis vinifera HOM05D004179 ORTHO05D005248 3.2e-251 871.7 581 80.6
Lj5A213T83 Lonicera japonica HOM05D004179 ORTHO05D005248 9.2e-251 870.2 535 85.6
Thhalv10020369m.g Eutrema salsugineum HOM05D004179 ORTHO05D005248 2.7e-250 868.6 577 79.2
FAN15G2578 Fragaria x ananassa HOM05D004179 ORTHO05D005248 3.5e-250 868.2 586 78.5
FAN20G2197 Fragaria x ananassa HOM05D004179 ORTHO05D005248 3.5e-250 868.2 584 79.1
Nn5g30409 Nelumbo nucifera HOM05D004179 ORTHO05D005248 3.9e-249 864.8 549 82.3
QL11p033970 Quercus lobata HOM05D004179 ORTHO05D005248 3.9e-249 864.8 582 79.0
Oeu037243.1 Olea europaea HOM05D004179 ORTHO05D005248 5.1e-249 864.4 578 80.6
AUR62039105 Chenopodium quinoa HOM05D004179 ORTHO05D005248 6.6e-249 864.0 585 77.4
AUR62010284 Chenopodium quinoa HOM05D004179 ORTHO05D005248 1.1e-248 863.2 586 78.3
Thecc.02G107000 Theobroma cacao HOM05D004179 ORTHO05D005248 1.1e-248 863.2 562 81.1
CARHR094910 Cardamine hirsuta HOM05D004179 ORTHO05D005248 5.6e-248 860.9 581 78.5
Atru.chr5.2582 Acer truncatum HOM05D004179 ORTHO05D005248 2.1e-247 859.0 591 77.7
TAR376G0033 Trochodendron aralioides HOM05D004179 ORTHO05D005248 6.2e-247 857.4 564 79.6
ClCG05G010240 Citrullus lanatus HOM05D004179 ORTHO05D005248 1.1e-246 856.7 587 76.8
Solyc11g044540.2 Solanum lycopersicum HOM05D004179 ORTHO05D005248 1.4e-246 856.3 550 81.3
PGSC0003DMG400022932 Solanum tuberosum HOM05D004179 ORTHO05D005248 1.4e-246 856.3 538 82.9
SGA_v2.0_scaffold225G43075 Striga asiatica HOM05D004179 ORTHO05D005248 1.8e-246 855.9 579 80.5
RcHm_v2.0_Chr6g0255511 Rosa chinensis HOM05D004179 ORTHO05D005248 2.4e-246 855.5 589 77.4
EL10Ac9g22290 Beta vulgaris HOM05D004179 ORTHO05D005248 6.8e-246 854.0 612 75.7
Migut.B00382 Erythranthe guttata HOM05D004179 ORTHO05D005248 1.2e-245 853.2 525 85.1
ECA236G2359 Erigeron canadensis HOM05D004179 ORTHO05D005248 1.5e-245 852.8 535 84.5
Lsat_1_v5_gn_7_86320 Lactuca sativa HOM05D004179 ORTHO05D005248 1.5e-245 852.8 542 83.6
Carub.0003s1929 Capsella rubella HOM05D004179 ORTHO05D005248 2.0e-245 852.4 552 81.7
Sopen11g020160 Solanum pennellii HOM05D004179 ORTHO05D005248 2.0e-245 852.4 538 82.2
AL3G32890 Arabidopsis lyrata HOM05D004179 ORTHO05D005248 2.6e-245 852.0 583 78.4
BolC5t33281H Brassica oleracea HOM05D004179 ORTHO05D005248 2.6e-245 852.0 585 77.8
AT3G19490 Arabidopsis thaliana HOM05D004179 ORTHO05D005248 3.4e-245 851.7 578 78.4
Sabra09G0074300 Salix brachista HOM05D004179 ORTHO05D005248 3.4e-245 851.7 516 86.2
BcaB06g26008 Brassica carinata HOM05D004179 ORTHO05D005248 5.8e-245 850.9 554 80.7
C05p45560 Brassica napus HOM05D004179 ORTHO05D005248 5.8e-245 850.9 585 77.8
Sp3g17540 Schrenkiella parvula HOM05D004179 ORTHO05D005248 9.9e-245 850.1 580 77.9
Aa31LG8G6240 Aethionema arabicum HOM05D004179 ORTHO05D005248 1.3e-244 849.7 569 80.5
MSTRG.20181 Avicennia marina HOM05D004179 ORTHO05D005248 1.3e-244 849.7 527 85.0
Cpa.g.sc106.85 Carica papaya HOM05D004179 ORTHO05D005248 6.4e-244 847.4 541 82.6
Oeu044290.1 Olea europaea HOM05D004179 ORTHO05D005248 1.1e-243 846.7 563 80.3
SalBow6G5260 Salvia bowleyana HOM05D004179 ORTHO05D005248 1.9e-243 845.9 505 85.9
Peaxi162Scf00152g00232 Petunia axillaris HOM05D004179 ORTHO05D005248 3.2e-243 845.1 492 87.8
Sed0014414 Sechium edule HOM05D004179 ORTHO05D005248 4.2e-243 844.7 590 76.1
BraA05t21853Z Brassica rapa HOM05D004179 ORTHO05D005248 7.1e-243 844.0 582 77.3
CAN.G621.5 Capsicum annuum HOM05D004179 ORTHO05D005248 7.1e-243 844.0 554 80.7
A05p30130 Brassica napus HOM05D004179 ORTHO05D005248 9.3e-243 843.6 582 77.3
COL.COLO4_32603 Corchorus olitorius HOM05D004179 ORTHO05D005248 2.7e-242 842.0 559 79.1
Rhsim05G0087800 Rhododendron simsii HOM05D004179 ORTHO05D005248 2.7e-242 842.0 557 80.8
Aqoxy6G02887 Aquilegia oxysepala HOM05D004179 ORTHO05D005248 4.6e-242 841.3 525 83.0
MSTRG.5346 Avicennia marina HOM05D004179 ORTHO05D005248 1.7e-241 839.3 529 83.6
Hund06333 Selenicereus undatus HOM05D004179 ORTHO05D005248 2.5e-240 835.5 584 77.1
PSO541G5343 Papaver somniferum HOM05D004179 ORTHO05D005248 3.3e-240 835.1 591 75.8
DCAR_001640 Daucus carota HOM05D004179 ORTHO05D005248 4.3e-240 834.7 544 81.2
Actinidia17883 Actinidia chinensis HOM05D004179 ORTHO05D005248 2.8e-239 832.0 544 82.4
BolC3t17326H Brassica oleracea HOM05D004179 ORTHO05D005248 3.6e-239 831.6 557 78.6
HanXRQChr04g0128091 Helianthus annuus HOM05D004179 ORTHO05D005248 3.6e-239 831.6 511 84.9
HanXRQChr16g0510101 Helianthus annuus HOM05D004179 ORTHO05D005248 4.8e-239 831.2 564 79.3
A03p41230 Brassica napus HOM05D004179 ORTHO05D005248 6.2e-239 830.9 536 81.2
C03p50340 Brassica napus HOM05D004179 ORTHO05D005248 6.2e-239 830.9 559 78.5
BraA03t13276Z Brassica rapa HOM05D004179 ORTHO05D005248 1.8e-238 829.3 534 80.7
PSO675G3501 Papaver somniferum HOM05D004179 ORTHO05D005248 3.1e-238 828.6 592 74.8
BcaC01g03629 Brassica carinata HOM05D004179 ORTHO05D005248 4.0e-238 828.2 559 78.4
unitig_37.g12803 Utricularia gibba HOM05D004179 ORTHO05D005248 2.6e-237 825.5 526 81.4
BcaB04g19041 Brassica carinata HOM05D004179 ORTHO05D005248 1.1e-235 820.1 550 78.5
Ah.01g018160 Amaranthus hybridus HOM05D004179 ORTHO05D005248 2.4e-235 818.9 568 75.4
FAN24G2682 Fragaria x ananassa HOM05D004179 ORTHO05D005248 4.6e-234 814.7 618 73.1
Cc02_g19190 Coffea canephora HOM05D004179 ORTHO05D005248 1.3e-233 813.1 545 80.2
ATR0691G115 Amborella trichopoda HOM05D004179 ORTHO05D005248 1.7e-233 812.8 520 80.6
vmacro19521 Vaccinium macrocarpon HOM05D004179 ORTHO05D005248 3.9e-233 811.6 536 80.8
Sc17g0003000 Simmondsia chinensis HOM05D004179 ORTHO05D005248 1.3e-231 806.6 544 79.6
RcHm_v2.0_Chr6g0255521 Rosa chinensis HOM05D004179 ORTHO05D005248 4.0e-230 801.6 507 82.4
HPP92_004767 Vanilla planifolia HOM05D004179 ORTHO05D005248 1.9e-224 782.7 572 73.8
Duzib052G0638 Durio zibethinus HOM05D004179 ORTHO05D005248 9.0e-222 773.9 493 83.0
RcHm_v2.0_Chr6g0255491 Rosa chinensis HOM05D004179 ORTHO05D005248 1.0e-220 770.4 466 85.6
Dinv15758 Davidia involucrata HOM05D004179 ORTHO05D005248 2.1e-218 762.7 435 90.3
SEGI_32792 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 1.0e-217 760.4 502 77.3
QL11p034034 Quercus lobata HOM05D004179 ORTHO05D005248 1.3e-212 743.4 437 87.2
Duzib132G1089 Durio zibethinus HOM05D004179 ORTHO05D005248 3.8e-212 741.9 483 80.3
Zm00001eb307330 Zea mays HOM05D004179 ORTHO05D005248 2.5e-211 739.2 458 81.4
Duzib052G0741 Durio zibethinus HOM05D004179 ORTHO05D005248 7.2e-211 737.6 553 72.2
QL11p034002 Quercus lobata HOM05D004179 ORTHO05D005248 5.1e-209 731.5 437 85.1
MELO3C019541.2 Cucumis melo HOM05D004179 ORTHO05D005248 8.7e-209 730.7 741 57.9
Hund00144 Selenicereus undatus HOM05D004179 ORTHO05D005248 5.9e-205 718.0 528 71.6
AagrBONN_evm.TU.Sc2ySwM_117.488 Anthoceros agrestis HOM05D004179 ORTHO05D005248 1.3e-204 716.8 513 72.1
Mapoly0030s0013 Marchantia polymorpha HOM05D004179 ORTHO05D005248 1.7e-204 716.5 507 71.8
Rhsim05G0087900 Rhododendron simsii HOM05D004179 ORTHO05D005248 1.4e-203 713.4 436 85.1
Glyma.20G129500 Glycine max HOM05D004179 ORTHO05D005248 1.4e-195 686.8 439 82.2
Pp3c12_4070 Physcomitrium patens HOM05D004179 ORTHO05D005248 1.4e-195 686.8 539 67.0
Pp3c4_21490 Physcomitrium patens HOM05D004179 ORTHO05D005248 1.6e-194 683.3 541 67.3
Nitab4.5_0001596g0010 Nicotiana tabacum HOM05D004179 ORTHO05D005248 3.0e-193 679.1 396 88.4
Duzib132G1182 Durio zibethinus HOM05D004179 ORTHO05D005248 6.5e-188 661.4 397 85.1
VMungo0720G0258 Vigna mungo HOM05D004179 ORTHO05D005248 1.8e-185 653.3 424 80.2
Os09g0109800 Oryza sativa ssp. japonica HOM05D004179 ORTHO05D005248 2.2e-183 646.4 406 81.3
SMO347G0195 Selaginella moellendorffii HOM05D004179 ORTHO05D005248 2.4e-182 642.9 438 75.1
CSS0041442 Camellia sinensis var. sinensis HOM05D004179 ORTHO05D005248 2.7e-181 639.4 439 78.8
Ciclev10030164m.g Citrus clementina HOM05D004179 ORTHO05D005248 3.5e-181 639.0 389 84.3
Thhalv10012248m.g Eutrema salsugineum HOM05D004179 ORTHO05D005248 6.5e-180 634.8 427 76.3
AT1G49810 Arabidopsis thaliana HOM05D004179 ORTHO05D005248 4.4e-176 622.1 418 76.1
AL1G57290 Arabidopsis lyrata HOM05D004179 ORTHO05D005248 1.2e-173 614.0 425 73.2
BcaC05g28472 Brassica carinata HOM05D004179 ORTHO05D005248 9.8e-168 594.3 585 59.1
MD05G1088200 Malus domestica HOM05D004179 ORTHO05D005248 4.1e-166 589.0 468 69.9
CDE04G0108 Ceratophyllum demersum HOM05D004179 ORTHO05D005248 1.4e-153 547.4 533 60.0
BcaB06g26006 Brassica carinata HOM05D004179 ORTHO05D005248 1.3e-151 540.8 316 86.7
vmacro23441 Vaccinium macrocarpon HOM05D004179 ORTHO05D005248 3.2e-150 536.2 443 68.8
CsaV3_3G018250 Cucumis sativus L. HOM05D004179 ORTHO05D005248 1.2e-146 524.2 389 73.5
Eucgr.H03221 Eucalyptus grandis HOM05D004179 ORTHO05D005248 3.7e-143 512.7 454 65.9
Carub.0001s3900 Capsella rubella HOM05D004179 ORTHO05D005248 1.9e-134 483.8 354 68.9
CiPaw.06G169900 Carya illinoinensis HOM05D004179 ORTHO05D005248 7.1e-134 481.9 299 82.9
Dinv42185 Davidia involucrata HOM05D004179 ORTHO05D005248 1.8e-129 467.2 311 82.0
MBI16_g34668_MAGBIO Magnolia biondii HOM05D004179 ORTHO05D005248 9.3e-126 454.9 269 84.4
Nitab4.5_0001539g0020 Nicotiana tabacum HOM05D004179 ORTHO05D005248 1.3e-124 451.1 259 88.0
RcHm_v2.0_Chr6g0255461 Rosa chinensis HOM05D004179 ORTHO05D005248 5.6e-123 445.7 285 81.4
Cre09.g395288 Chlamydomonas reinhardtii HOM05D004179 ORTHO05D005248 6.9e-121 438.7 561 45.8
Glyma.20G127600 Glycine max HOM05D004179 ORTHO05D005248 1.8e-92 344.4 231 79.7
Actinidia27968 Actinidia chinensis HOM05D004179 ORTHO05D005248 3.9e-92 343.2 483 47.2
SEGI_35862 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 4.1e-81 306.6 213 73.2
Sabra16G0189200 Salix brachista HOM05D004179 ORTHO05D005248 7.7e-80 302.4 577 39.7
Glyma.10G261350 Glycine max HOM05D004179 ORTHO05D005248 2.9e-79 300.4 186 81.7
CBR_g29563 Chara braunii HOM05D004179 ORTHO05D005248 2.7e-69 267.3 228 63.6
HanXRQChr02g0055551 Helianthus annuus HOM05D004179 ORTHO05D005248 4.5e-56 223.4 142 78.2
SEGI_39751 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 6.5e-55 219.5 173 66.5
CBR_g39138 Chara braunii HOM05D004179 ORTHO05D005248 6.1e-53 213.0 193 58.0
TPR.G27121 Trifolium pratense HOM05D004179 ORTHO05D005248 4.1e-49 200.3 126 81.7
RcHm_v2.0_Chr6g0255471 Rosa chinensis HOM05D004179 ORTHO05D005248 1.1e-46 192.2 119 84.0
Hund13342 Selenicereus undatus HOM05D004179 ORTHO05D005248 1.0e-36 159.1 102 79.4
Hund09393 Selenicereus undatus HOM05D004179 ORTHO05D005248 3.4e-35 154.1 170 54.7
arahy.Tifrunner.gnm1.ann1.38ITRC Arachis hypogaea HOM05D000846 ORTHO05D021490 2.4e-33 147.9 109 77.1
SEGI_40595 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 2.3e-31 141.4 94 69.1
BcaB01g01792 Brassica carinata HOM05D002587 ORTHO05D002778 3.3e-30 137.5 101 76.2
HanXRQChr02g0055561 Helianthus annuus HOM05D004179 ORTHO05D021490 7.5e-27 126.3 78 87.2
TPR.G23074 Trifolium pratense HOM05D001509 ORTHO05D001361 1.7e-26 125.2 79 82.3
Manes.04G059624 Manihot esculenta HOM05D004179 ORTHO05D021490 8.3e-26 122.9 69 89.9
PSO832G1539 Papaver somniferum HOM05D000003 ORTHO05D000004 2.7e-24 117.9 103 62.1
CBR_g29562 Chara braunii HOM05D004179 ORTHO05D005248 3.3e-22 110.9 90 58.9
arahy.Tifrunner.gnm1.ann1.38IWEY Arachis hypogaea HOM05D004179 ORTHO05D005248 4.3e-22 110.5 61 93.4
MD05G1088300 Malus domestica HOM05D004179 ORTHO05D005248 1.1e-20 105.9 70 77.1
arahy.Tifrunner.gnm1.ann1.JR6IQW Arachis hypogaea HOM05D004179 ORTHO05D021490 4.6e-16 90.5 53 88.7
BcaC02g11330 Brassica carinata HOM05D004179 ORTHO05D092784 2.4e-12 78.2 141 36.9
CARHR039870 Cardamine hirsuta HOM05D004179 ORTHO05D021490 5.2e-12 77.0 58 70.7
VMungo0720G0416 Vigna mungo HOM05D004179 ORTHO05D020814 1.5e-11 75.5 65 56.9
VMungo1215G0907 Vigna mungo HOM05D004179 ORTHO05D020814 2.2e-10 71.6 52 67.3
HanXRQChr04g0106691 Helianthus annuus HOM05D004179 ORTHO05D020814 2.9e-10 71.2 47 74.5
SMO199G0121 Selaginella moellendorffii HOM05D004179 ORTHO05D374621 7.1e-09 66.6 93 47.3
Hund25982 Selenicereus undatus HOM05D004179 ORTHO05D021490 6.6e-07 60.1 39 82.1


User provided reference genes

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