Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0014836 Lotus japonicus HOM05D005701 ORTHO05D007058 4.3e-112 407.9 192 100.0
Lalb_Chr06g0163181 Lupinus albus HOM05D005701 ORTHO05D007058 3.8e-92 341.7 191 82.7
Glyma.02G150100 Glycine max HOM05D005701 ORTHO05D007058 3.5e-90 335.1 193 80.8
Medtr1g089810 Medicago truncatula HOM05D005701 ORTHO05D007058 5.1e-89 331.3 185 83.8
Phvul.007G168600 Phaseolus vulgaris HOM05D005701 ORTHO05D007058 8.7e-89 330.5 193 78.8
Psat6g169920 Pisum sativum HOM05D005701 ORTHO05D007058 7.3e-88 327.4 186 83.3
Ca_10397_v3 Cicer arietinum L. HOM05D005701 ORTHO05D007058 6.2e-87 324.3 184 82.6
TPR.G26671 Trifolium pratense HOM05D005701 ORTHO05D007058 5.3e-86 321.2 191 78.5
Ciclev10022400m.g Citrus clementina HOM05D005701 ORTHO05D007058 2.4e-83 312.4 180 79.4
Potri.002G212400 Populus trichocarpa HOM05D005701 ORTHO05D007058 1.2e-82 310.1 170 81.8
Actinidia24310 Actinidia chinensis HOM05D005701 ORTHO05D007058 1.6e-82 309.7 187 73.8
QL02p002445 Quercus lobata HOM05D005701 ORTHO05D007058 2.1e-82 309.3 183 76.0
TWI59G0853 Tripterygium wilfordii HOM05D005701 ORTHO05D007058 1.0e-81 307.0 184 77.2
Lsat_1_v5_gn_5_187740 Lactuca sativa HOM05D005701 ORTHO05D007058 3.0e-81 305.4 189 74.6
PGSC0003DMG401020044 Solanum tuberosum HOM05D005701 ORTHO05D007058 5.1e-81 304.7 184 73.4
Rhsim13G0021200 Rhododendron simsii HOM05D005701 ORTHO05D007058 1.9e-80 302.8 171 79.5
Cfa006081 Carpinus fangiana HOM05D005701 ORTHO05D007058 4.3e-80 301.6 184 72.3
vmacro02538 Vaccinium macrocarpon HOM05D005701 ORTHO05D007058 9.6e-80 300.4 192 74.5
CiPaw.08G102100 Carya illinoinensis HOM05D005701 ORTHO05D007058 1.6e-79 299.7 180 74.4
Gohir.A12G006700 Gossypium hirsutum HOM05D005701 ORTHO05D007058 1.6e-79 299.7 169 79.3
PGR119G1915 Punica granatum HOM05D005701 ORTHO05D007058 3.7e-79 298.5 176 77.8
Manes.05G072000 Manihot esculenta HOM05D005701 ORTHO05D007058 4.8e-79 298.1 184 76.1
Eucgr.H01544 Eucalyptus grandis HOM05D005701 ORTHO05D007058 8.1e-79 297.4 176 75.6
CAN.G1682.11 Capsicum annuum HOM05D005701 ORTHO05D007058 1.1e-78 297.0 166 77.7
Duzib138G1703 Durio zibethinus HOM05D005701 ORTHO05D007058 1.8e-78 296.2 183 74.9
Solyc06g084390.3 Solanum lycopersicum HOM05D005701 ORTHO05D007058 1.8e-78 296.2 184 72.3
Sopen06g035780 Solanum pennellii HOM05D005701 ORTHO05D007058 1.8e-78 296.2 184 72.3
THA.LOC104826003 Tarenaya hassleriana HOM05D005701 ORTHO05D007058 1.8e-78 296.2 189 69.3
ECA248G0764 Erigeron canadensis HOM05D005701 ORTHO05D007058 2.4e-78 295.8 183 71.0
PSO302G0130 Papaver somniferum HOM05D005701 ORTHO05D007058 3.1e-78 295.4 186 71.5
SalBow6G2366 Salvia bowleyana HOM05D005701 ORTHO05D007058 3.1e-78 295.4 170 78.8
CsaV3_7G028500 Cucumis sativus L. HOM05D005701 ORTHO05D007058 4.0e-78 295.0 181 75.7
Dinv11265 Davidia involucrata HOM05D005701 ORTHO05D007058 9.0e-78 293.9 183 72.7
HanXRQChr14g0430981 Helianthus annuus HOM05D005701 ORTHO05D007058 9.0e-78 293.9 174 75.9
Sed0003723 Sechium edule HOM05D005701 ORTHO05D007058 9.0e-78 293.9 189 74.1
Thecc.01G285600 Theobroma cacao HOM05D005701 ORTHO05D007058 1.2e-77 293.5 189 70.9
THA.LOC104801212 Tarenaya hassleriana HOM05D005701 ORTHO05D007058 1.5e-77 293.1 169 75.7
Nitab4.5_0002093g0100 Nicotiana tabacum HOM05D005701 ORTHO05D007058 2.0e-77 292.7 194 68.6
ClCG09G006770 Citrullus lanatus HOM05D005701 ORTHO05D007058 3.4e-77 292.0 186 73.7
CSS0017429 Camellia sinensis var. sinensis HOM05D005701 ORTHO05D007058 9.9e-77 290.4 187 69.5
Haze_04768 Corylus avellana HOM05D005701 ORTHO05D007058 9.9e-77 290.4 206 65.5
MELO3C015871.2 Cucumis melo HOM05D005701 ORTHO05D007058 9.9e-77 290.4 181 75.1
Peaxi162Scf00783g00418 Petunia axillaris HOM05D005701 ORTHO05D007058 1.3e-76 290.0 161 77.6
TAR365G0921 Trochodendron aralioides HOM05D005701 ORTHO05D007058 1.7e-76 289.7 161 80.1
PSO170G3928 Papaver somniferum HOM05D005701 ORTHO05D007058 2.2e-76 289.3 183 71.0
Nitab4.5_0010603g0020 Nicotiana tabacum HOM05D005701 ORTHO05D007058 4.9e-76 288.1 162 78.4
Oeu006228.1 Olea europaea HOM05D005701 ORTHO05D007058 4.9e-76 288.1 186 73.7
Sc24g0004070 Simmondsia chinensis HOM05D005701 ORTHO05D007058 1.1e-75 287.0 186 69.4
Aa31LG5G2530 Aethionema arabicum HOM05D005701 ORTHO05D007058 4.2e-75 285.0 183 71.0
Cc01_g05150 Coffea canephora HOM05D005701 ORTHO05D007058 4.2e-75 285.0 186 70.4
FAN15G1986 Fragaria x ananassa HOM05D005701 ORTHO05D007058 9.3e-75 283.9 185 71.9
Migut.N02139 Erythranthe guttata HOM05D005701 ORTHO05D007058 1.2e-74 283.5 177 72.9
Aqoxy2G03192 Aquilegia oxysepala HOM05D005701 ORTHO05D007058 1.6e-74 283.1 181 69.6
FAN20G1753 Fragaria x ananassa HOM05D005701 ORTHO05D007058 1.6e-74 283.1 185 71.9
FAN27G2557 Fragaria x ananassa HOM05D005701 ORTHO05D007058 1.6e-74 283.1 185 71.9
RcHm_v2.0_Chr6g0291961 Rosa chinensis HOM05D005701 ORTHO05D007058 2.1e-74 282.7 181 72.9
Prupe.8G247700 Prunus persica HOM05D005701 ORTHO05D007058 2.7e-74 282.3 175 73.7
GSVIVG01011062001 Vitis vinifera HOM05D005701 ORTHO05D007058 2.7e-74 282.3 179 70.4
ECA248G1579 Erigeron canadensis HOM05D005701 ORTHO05D007058 3.5e-74 282.0 200 64.5
AT4G02980 Arabidopsis thaliana HOM05D005701 ORTHO05D007058 4.6e-74 281.6 185 71.9
MD03G1271500 Malus domestica HOM05D005701 ORTHO05D007058 4.6e-74 281.6 188 69.1
CANSAT25G0672 Cannabis sativa HOM05D005701 ORTHO05D007058 7.9e-74 280.8 188 69.1
MD11G1292100 Malus domestica HOM05D005701 ORTHO05D007058 7.9e-74 280.8 189 69.8
Migut.N02175 Erythranthe guttata HOM05D005701 ORTHO05D007058 1.0e-73 280.4 175 73.1
Lj2A1180T63 Lonicera japonica HOM05D005701 ORTHO05D007058 1.3e-73 280.0 173 72.8
A09p02300 Brassica napus HOM05D005701 ORTHO05D007058 1.8e-73 279.6 185 73.0
BraA09t35879Z Brassica rapa HOM05D005701 ORTHO05D007058 1.8e-73 279.6 185 73.0
Carub.0006s3407 Capsella rubella HOM05D005701 ORTHO05D007058 3.0e-73 278.9 182 71.4
MSTRG.17433 Avicennia marina HOM05D005701 ORTHO05D007058 3.9e-73 278.5 186 69.9
AL6G49950 Arabidopsis lyrata HOM05D005701 ORTHO05D007058 5.1e-73 278.1 185 71.4
Thhalv10028980m.g Eutrema salsugineum HOM05D005701 ORTHO05D007058 5.1e-73 278.1 183 69.9
FAN24G1361 Fragaria x ananassa HOM05D005701 ORTHO05D007058 1.5e-72 276.6 185 70.3
EL10Ac7g17192 Beta vulgaris HOM05D005701 ORTHO05D007058 1.9e-72 276.2 169 71.0
Hma1.2p1_0628F.1_g191820 Hydrangea macrophylla HOM05D005701 ORTHO05D007058 1.9e-72 276.2 164 75.6
Hund06566 Selenicereus undatus HOM05D005701 ORTHO05D007058 2.5e-72 275.8 183 68.3
Nn1g02106 Nelumbo nucifera HOM05D005701 ORTHO05D007058 3.3e-72 275.4 168 75.0
TPR.G13316 Trifolium pratense HOM05D005701 ORTHO05D007058 4.3e-72 275.0 237 61.6
BolC9t53172H Brassica oleracea HOM05D005701 ORTHO05D007058 5.6e-72 274.6 182 72.5
BcaB01g02494 Brassica carinata HOM05D005701 ORTHO05D007058 1.3e-71 273.5 185 69.2
C09p02410 Brassica napus HOM05D005701 ORTHO05D007058 1.3e-71 273.5 182 72.5
Sp6g03020 Schrenkiella parvula HOM05D005701 ORTHO05D007058 1.3e-71 273.5 185 71.4
Migut.D00251 Erythranthe guttata HOM05D005701 ORTHO05D007058 3.7e-71 271.9 191 66.5
BolC3t16031H Brassica oleracea HOM05D005701 ORTHO05D007058 3.1e-70 268.9 185 68.1
C03p37390 Brassica napus HOM05D005701 ORTHO05D007058 4.0e-70 268.5 185 68.1
CARHR251350 Cardamine hirsuta HOM05D005701 ORTHO05D007058 4.0e-70 268.5 161 75.2
BcaC01g06714 Brassica carinata HOM05D005701 ORTHO05D007058 5.3e-70 268.1 185 68.1
BraA03t12248Z Brassica rapa HOM05D005701 ORTHO05D007058 6.9e-70 267.7 168 70.8
A03p30690 Brassica napus HOM05D005701 ORTHO05D007058 9.0e-70 267.3 185 68.1
Thecc.01G285700 Theobroma cacao HOM05D005701 ORTHO05D007058 9.0e-70 267.3 191 64.9
unitig_8.g3319 Utricularia gibba HOM05D005701 ORTHO05D007058 9.0e-70 267.3 186 66.7
Ah.08g212880 Amaranthus hybridus HOM05D005701 ORTHO05D007058 1.2e-69 266.9 191 64.9
VMungo0720G2830 Vigna mungo HOM05D005701 ORTHO05D007058 1.0e-68 263.8 154 82.5
SGA_v2.0_scaffold1G00437 Striga asiatica HOM05D005701 ORTHO05D007058 1.4e-67 260.0 194 61.9
Zm00001eb410800 Zea mays HOM05D005701 ORTHO05D007058 1.2e-66 256.9 185 68.6
AUR62036778 Chenopodium quinoa HOM05D005701 ORTHO05D007058 1.0e-65 253.8 229 55.0
HPP92_010620 Vanilla planifolia HOM05D005701 ORTHO05D007058 1.0e-65 253.8 186 66.7
Os12g0529400 Oryza sativa ssp. japonica HOM05D005701 ORTHO05D007058 8.7e-65 250.8 182 64.8
Manes.01G211300 Manihot esculenta HOM05D005701 ORTHO05D007058 1.1e-64 250.4 140 83.6
Zm00001eb410760 Zea mays HOM05D005701 ORTHO05D007058 1.9e-64 249.6 191 66.5
Cc01_g03720 Coffea canephora HOM05D005701 ORTHO05D007058 2.5e-64 249.2 140 79.3
CDE08G1024 Ceratophyllum demersum HOM05D005701 ORTHO05D007058 1.6e-63 246.5 183 63.9
Zm00001eb137840 Zea mays HOM05D005701 ORTHO05D007058 1.8e-62 243.0 185 64.3
Atru.chr5.1332 Acer truncatum HOM05D005701 ORTHO05D007058 6.9e-62 241.1 151 75.5
Gorai.008G006100 Gossypium raimondii HOM05D005701 ORTHO05D007058 9.0e-62 240.7 155 72.3
BcaB01g01993 Brassica carinata HOM05D005701 ORTHO05D007058 2.6e-61 239.2 143 76.9
SalBow3G3506 Salvia bowleyana HOM05D005701 ORTHO05D007058 3.4e-61 238.8 187 62.0
SGA_v2.0_scaffold172G39038 Striga asiatica HOM05D005701 ORTHO05D007058 9.4e-59 230.7 159 68.6
Oeu047892.2 Olea europaea HOM05D005701 ORTHO05D007058 2.1e-58 229.6 244 50.0
MSTRG.12575 Avicennia marina HOM05D005701 ORTHO05D007058 7.4e-56 221.1 187 55.6
Rhsim13G0021400 Rhododendron simsii HOM05D005701 ORTHO05D007058 3.4e-53 212.2 150 66.0
Cpa.g.sc9.126 Carica papaya HOM05D005701 ORTHO05D007058 3.0e-49 199.1 120 74.2
Pp3c4_12660 Physcomitrium patens HOM05D005701 ORTHO05D007058 8.8e-49 197.6 149 57.0
Pp3c4_12750 Physcomitrium patens HOM05D005701 ORTHO05D007058 1.1e-48 197.2 147 57.8
SMO164G0245 Selaginella moellendorffii HOM05D005701 ORTHO05D007058 2.8e-47 192.6 153 56.9
Cc00_g05320 Coffea canephora HOM05D005701 ORTHO05D007058 8.2e-47 191.0 171 55.6
FvH4_2g24150 Fragaria vesca HOM05D005701 ORTHO05D007058 1.2e-45 187.2 126 69.8
MBI19_g33449_MAGBIO Magnolia biondii HOM05D005701 ORTHO05D007058 4.2e-43 178.7 104 76.0
Zm00001eb440220 Zea mays HOM05D005701 ORTHO05D007058 4.2e-43 178.7 139 64.7
MBI19_g39288_MAGBIO Magnolia biondii HOM05D005701 ORTHO05D007058 5.5e-43 178.3 103 76.7
CAN.G996.16 Capsicum annuum HOM05D005701 ORTHO05D007058 1.6e-42 176.8 129 58.9
vmacro02539 Vaccinium macrocarpon HOM05D005701 ORTHO05D007058 8.0e-42 174.5 135 62.2
Gohir.D12G006100 Gossypium hirsutum HOM05D005701 ORTHO05D007058 2.6e-40 169.5 96 80.2
ATR0626G241 Amborella trichopoda HOM05D005701 ORTHO05D007058 4.4e-40 168.7 130 59.2
QL02p081958 Quercus lobata HOM05D005701 ORTHO05D007058 6.3e-39 164.9 97 75.3
Rhsim13G0021300 Rhododendron simsii HOM05D005701 ORTHO05D007058 9.1e-38 161.0 223 40.8
CBR_g38020 Chara braunii HOM05D005701 ORTHO05D007058 6.5e-36 154.8 118 55.9
Zm00001eb410780 Zea mays HOM05D005701 ORTHO05D007058 8.5e-36 154.5 143 58.0
AUR62033690 Chenopodium quinoa HOM05D005701 ORTHO05D007058 3.2e-35 152.5 91 73.6
AagrBONN_evm.TU.Sc2ySwM_117.1970 Anthoceros agrestis HOM05D005701 ORTHO05D007058 2.6e-32 142.9 162 43.2
Os12g0529300 Oryza sativa ssp. japonica HOM05D005701 ORTHO05D007058 1.6e-29 133.7 84 70.2
Ah.04g164000 Amaranthus hybridus HOM05D005701 ORTHO05D007058 7.7e-29 131.3 90 62.2
C09p02610 Brassica napus HOM05D005701 ORTHO05D007058 4.0e-25 119.0 72 73.6
Lsat_1_v5_gn_4_17561 Lactuca sativa HOM05D005701 ORTHO05D007058 5.7e-24 115.2 96 63.5
CSS0004068 Camellia sinensis var. sinensis HOM05D005701 ORTHO05D007058 1.6e-21 107.1 187 35.3
HPP92_017198 Vanilla planifolia HOM05D005701 ORTHO05D051565 5.0e-20 102.1 182 35.2
Rhsim11G0018300 Rhododendron simsii HOM05D003327 ORTHO05D004535 2.7e-13 79.7 44 79.5


User provided reference genes

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