Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0014355 Lotus japonicus HOM05D007549 ORTHO05D009532 4.4e-32 140.6 67 100.0
Lj1g0000802 Lotus japonicus HOM05D007549 ORTHO05D009532 2.4e-30 134.8 67 97.0
LjContig00318g0016693 Lotus japonicus HOM05D007549 ORTHO05D009532 2.4e-30 134.8 67 97.0
Glyma.12G232300 Glycine max HOM05D007549 ORTHO05D009532 1.4e-25 119.0 67 85.1
RcHm_v2.0_CPg0502021 Rosa chinensis HOM05D007549 ORTHO05D009532 2.0e-24 115.2 67 79.1
Glyma.15G239000 Glycine max HOM05D007549 ORTHO05D009532 1.3e-23 112.5 67 80.6
Lalb_Chr07g0192081 Lupinus albus HOM05D007549 ORTHO05D009532 1.3e-23 112.5 68 82.4
Lalb_Chr20g0115511 Lupinus albus HOM05D007549 ORTHO05D009532 1.3e-23 112.5 68 82.4
CARHR282150 Cardamine hirsuta HOM05D007549 ORTHO05D009532 2.2e-23 111.7 67 76.1
BolSC49t61174H Brassica oleracea HOM05D007549 ORTHO05D009532 2.9e-23 111.3 67 74.6
EL10As12g24029 Beta vulgaris HOM05D007549 ORTHO05D009532 3.8e-23 110.9 67 77.6
EL10As15g24130 Beta vulgaris HOM05D007549 ORTHO05D009532 3.8e-23 110.9 67 77.6
A06p23130 Brassica napus HOM05D007549 ORTHO05D009532 4.9e-23 110.5 67 74.6
BNapus_Darmor_BZH_scaffold_253p00240 Brassica napus HOM05D007549 ORTHO05D009532 4.9e-23 110.5 67 74.6
BNapus_Darmor_BZH_scaffold_287p00180 Brassica napus HOM05D007549 ORTHO05D009532 4.9e-23 110.5 67 74.6
C02p43570 Brassica napus HOM05D007549 ORTHO05D009532 4.9e-23 110.5 67 74.6
C06p22970 Brassica napus HOM05D007549 ORTHO05D009532 4.9e-23 110.5 67 74.6
C06p23020 Brassica napus HOM05D007549 ORTHO05D009532 4.9e-23 110.5 67 74.6
BolC8t52432H Brassica oleracea HOM05D007549 ORTHO05D009532 4.9e-23 110.5 67 74.6
BolSC29t60475H Brassica oleracea HOM05D007549 ORTHO05D009532 4.9e-23 110.5 67 74.6
BolSC29t60596H Brassica oleracea HOM05D007549 ORTHO05D009532 4.9e-23 110.5 67 74.6
BolSC35t60656H Brassica oleracea HOM05D007549 ORTHO05D009532 4.9e-23 110.5 67 74.6
BolSC35t60741H Brassica oleracea HOM05D007549 ORTHO05D009532 4.9e-23 110.5 67 74.6
BolSC47t61088H Brassica oleracea HOM05D007549 ORTHO05D009532 4.9e-23 110.5 67 74.6
BraA06t25416Z Brassica rapa HOM05D007549 ORTHO05D009532 4.9e-23 110.5 67 74.6
BraSC25t45857Z Brassica rapa HOM05D007549 ORTHO05D009532 4.9e-23 110.5 67 74.6
AL2G21610 Arabidopsis lyrata HOM05D007549 ORTHO05D009532 8.4e-23 109.8 67 74.6
Gohir.1Z050480 Gossypium hirsutum HOM05D007549 ORTHO05D009532 8.4e-23 109.8 67 76.1
Gohir.A09G103600 Gossypium hirsutum HOM05D007549 ORTHO05D009532 8.4e-23 109.8 67 76.1
ATCG00640 Arabidopsis thaliana HOM05D007549 ORTHO05D009532 1.1e-22 109.4 67 73.1
Gohir.D12G108000 Gossypium hirsutum HOM05D007549 ORTHO05D009532 1.1e-22 109.4 67 76.1
Nn021s41532 Nelumbo nucifera HOM05D007549 ORTHO05D009532 1.1e-22 109.4 67 77.6
Sed0011532 Sechium edule HOM05D007549 ORTHO05D009532 1.1e-22 109.4 67 77.6
Sed0017373 Sechium edule HOM05D007549 ORTHO05D009532 1.1e-22 109.4 67 77.6
Sed0021629 Sechium edule HOM05D007549 ORTHO05D009532 1.1e-22 109.4 67 77.6
Sed0025178 Sechium edule HOM05D007549 ORTHO05D009532 1.1e-22 109.4 67 77.6
Ciclev10033989m.g Citrus clementina HOM05D007549 ORTHO05D009532 1.4e-22 109.0 67 76.1
Gohir.D02G088100 Gossypium hirsutum HOM05D007549 ORTHO05D009532 1.4e-22 109.0 67 76.1
BolC9t53163H Brassica oleracea HOM05D007549 ORTHO05D009532 1.9e-22 108.6 67 74.6
PSO548G0033 Papaver somniferum HOM05D007549 ORTHO05D009532 1.9e-22 108.6 67 76.1
DCAR_032505 Daucus carota HOM05D007549 ORTHO05D009532 3.2e-22 107.8 67 74.6
HanXRQChr11g0345191 Helianthus annuus HOM05D007549 ORTHO05D009532 3.2e-22 107.8 67 76.1
Solyc09g064410.1 Solanum lycopersicum HOM05D007549 ORTHO05D009532 3.2e-22 107.8 67 76.1
MELO3C001514.2 Cucumis melo HOM05D007549 ORTHO05D009532 4.2e-22 107.5 67 77.6
Medtr4g051350 Medicago truncatula HOM05D004570 ORTHO05D009532 4.2e-22 107.5 61 82.0
Potri.003G067400 Populus trichocarpa HOM05D007549 ORTHO05D009532 4.2e-22 107.5 67 77.6
PGR111G0018 Punica granatum HOM05D007549 ORTHO05D009532 4.2e-22 107.5 69 76.8
CAN.G1148.11 Capsicum annuum HOM05D007549 ORTHO05D009532 5.4e-22 107.1 67 76.1
CAN.G1314.5 Capsicum annuum HOM05D007549 ORTHO05D009532 5.4e-22 107.1 67 76.1
CAN.G2018.15 Capsicum annuum HOM05D007549 ORTHO05D009532 5.4e-22 107.1 67 76.1
CAN.G2018.7 Capsicum annuum HOM05D007549 ORTHO05D009532 5.4e-22 107.1 67 76.1
CAN.G438.85 Capsicum annuum HOM05D007549 ORTHO05D009532 5.4e-22 107.1 67 76.1
Gohir.A06G124600 Gossypium hirsutum HOM05D007549 ORTHO05D009532 5.4e-22 107.1 67 74.6
BolC2t08912H Brassica oleracea HOM05D007549 ORTHO05D009532 7.1e-22 106.7 67 73.1
BolC6t36197H Brassica oleracea HOM05D007549 ORTHO05D009532 7.1e-22 106.7 67 71.6
CsaV3_7G024610 Cucumis sativus L. HOM05D007549 ORTHO05D009532 9.3e-22 106.3 67 76.1
HanXRQChr00c0314g0573541 Helianthus annuus HOM05D007549 ORTHO05D009532 1.2e-21 105.9 67 76.1
HanXRQChr01g0020311 Helianthus annuus HOM05D007549 ORTHO05D009532 1.2e-21 105.9 67 76.1
HanXRQChr02g0041601 Helianthus annuus HOM05D007549 ORTHO05D009532 1.2e-21 105.9 67 76.1
HanXRQChr02g0044861 Helianthus annuus HOM05D007549 ORTHO05D009532 1.2e-21 105.9 67 76.1
HanXRQChr10g0284281 Helianthus annuus HOM05D007549 ORTHO05D009532 1.2e-21 105.9 67 76.1
HanXRQChr10g0289301 Helianthus annuus HOM05D007549 ORTHO05D009532 1.2e-21 105.9 67 76.1
HanXRQChr10g0318161 Helianthus annuus HOM05D007549 ORTHO05D009532 1.2e-21 105.9 67 76.1
HanXRQChr11g0326871 Helianthus annuus HOM05D007549 ORTHO05D009532 1.2e-21 105.9 67 76.1
HanXRQCPg0580081 Helianthus annuus HOM05D007549 ORTHO05D009532 1.2e-21 105.9 67 76.1
Medtr8g045210 Medicago truncatula HOM05D007549 ORTHO05D009532 1.2e-21 105.9 62 79.0
BraSC138t45567Z Brassica rapa HOM05D007549 ORTHO05D009532 1.6e-21 105.5 65 72.3
CAN.G3365.3 Capsicum annuum HOM05D007549 ORTHO05D009532 2.1e-21 105.1 67 74.6
ClCG11G009530 Citrullus lanatus HOM05D007549 ORTHO05D009532 3.5e-21 104.4 61 78.7
HanXRQChr04g0095131 Helianthus annuus HOM05D007549 ORTHO05D009532 3.5e-21 104.4 67 74.6
Gohir.A10G214800 Gossypium hirsutum HOM05D007549 ORTHO05D009532 6.0e-21 103.6 67 71.6
arahy.Tifrunner.gnm1.ann1.JD40MT Arachis hypogaea HOM05D007549 ORTHO05D009532 7.9e-21 103.2 59 81.4
CAN.G452.5 Capsicum annuum HOM05D007549 ORTHO05D009532 1.0e-20 102.8 67 74.6
Lalb_Chr23g0274441 Lupinus albus HOM05D007549 ORTHO05D009532 2.3e-20 101.7 67 76.1
BraSC58t46491Z Brassica rapa HOM05D007549 ORTHO05D009532 3.9e-20 100.9 62 72.6
HanXRQChr02g0052591 Helianthus annuus HOM05D007549 ORTHO05D009532 6.7e-20 100.1 67 71.6
HanXRQChr00c0339g0573821 Helianthus annuus HOM05D007549 ORTHO05D009532 2.5e-19 98.2 61 75.4
HanXRQChr10g0283591 Helianthus annuus HOM05D007549 ORTHO05D009532 2.5e-19 98.2 61 75.4
Oeu062831.1 Olea europaea HOM05D007549 ORTHO05D009532 3.3e-19 97.8 67 71.6
ClCG02G007770 Citrullus lanatus HOM05D007549 ORTHO05D009532 8.1e-18 93.2 67 73.1
TPR.G34467 Trifolium pratense HOM05D007549 ORTHO05D009532 4.0e-17 90.9 49 85.7
BolC4t25867H Brassica oleracea HOM05D007549 ORTHO05D009532 7.6e-16 86.7 56 71.4
HanXRQChr11g0331601 Helianthus annuus HOM05D007549 ORTHO05D009532 2.9e-15 84.7 66 62.1
Gohir.D11G296624 Gossypium hirsutum HOM05D007549 ORTHO05D009532 6.4e-15 83.6 67 61.2
Gorai.007G320000 Gossypium raimondii HOM05D007549 ORTHO05D009532 6.4e-15 83.6 67 61.2
Gohir.D07G173850 Gossypium hirsutum HOM05D007549 ORTHO05D009532 4.2e-14 80.9 67 58.2
HanXRQChr00c0557g0575791 Helianthus annuus HOM05D007549 ORTHO05D009532 9.3e-14 79.7 51 74.5
Gorai.001G194300 Gossypium raimondii HOM05D007549 ORTHO05D009532 2.1e-13 78.6 67 56.7
HanXRQChr16g0529021 Helianthus annuus HOM05D007549 ORTHO05D009532 2.7e-13 78.2 45 82.2
Hund31442 Selenicereus undatus HOM05D007549 ORTHO05D009532 3.5e-13 77.8 53 71.7
Lalb_Chr23g0274351 Lupinus albus HOM05D007549 ORTHO05D009532 6.0e-13 77.0 51 76.5
Gorai.010G129600 Gossypium raimondii HOM05D007549 ORTHO05D009532 7.9e-13 76.6 67 58.2
Gohir.D06G113650 Gossypium hirsutum HOM05D007549 ORTHO05D009532 1.6e-10 68.9 67 55.2
Gohir.A07G175856 Gossypium hirsutum HOM05D007549 ORTHO05D009532 2.1e-10 68.6 67 53.7
MCO12G297 Micromonas commoda HOM05D007549 ORTHO05D009532 2.8e-10 68.2 66 51.5
Gohir.D11G284350 Gossypium hirsutum HOM05D007549 ORTHO05D009532 4.0e-09 64.3 67 52.2
PRCOL_00001223 Prasinoderma coloniale HOM05D007549 ORTHO05D009532 5.3e-09 63.9 67 50.7
Cre10.g462950 Chlamydomonas reinhardtii HOM05D007549 ORTHO05D009532 2.6e-08 61.6 65 50.8
Nitab4.5_0011882g0050 Nicotiana tabacum HOM05D008505 ORTHO05D010735 7.6e-08 60.1 38 73.7
BraSC58t46430Z Brassica rapa HOM05D007549 ORTHO05D009532 2.9e-07 58.2 37 67.6


User provided reference genes

Program Settings