Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0014275 Lotus japonicus HOM05D004545 ORTHO05D005420 7.9e-135 483.8 248 100.0
Glyma.20G151100 Glycine max HOM05D004545 ORTHO05D005420 2.3e-118 429.1 245 90.6
VMungo0720G1040 Vigna mungo HOM05D004545 ORTHO05D005420 6.7e-118 427.6 245 90.6
Phvul.007G062600 Phaseolus vulgaris HOM05D004545 ORTHO05D005420 7.4e-117 424.1 245 89.8
Glyma.10G243100 Glycine max HOM05D004545 ORTHO05D005420 3.1e-115 418.7 245 89.4
arahy.Tifrunner.gnm1.ann1.71GTDD Arachis hypogaea HOM05D004545 ORTHO05D005420 5.0e-113 411.4 249 85.9
Medtr4g068700 Medicago truncatula HOM05D004545 ORTHO05D005420 6.5e-113 411.0 250 86.8
arahy.Tifrunner.gnm1.ann1.N045ZR Arachis hypogaea HOM05D004545 ORTHO05D005420 1.9e-112 409.5 248 86.3
arahy.Tifrunner.gnm1.ann1.DQ148B Arachis hypogaea HOM05D004545 ORTHO05D005420 3.2e-112 408.7 248 86.3
Haze_12771 Corylus avellana HOM05D004545 ORTHO05D005420 2.1e-111 406.0 245 85.3
Ca_24113_v3 Cicer arietinum L. HOM05D004545 ORTHO05D005420 3.6e-111 405.2 250 85.6
Manes.13G066400 Manihot esculenta HOM05D004545 ORTHO05D005420 1.8e-110 402.9 245 85.3
FvH4_6g42360 Fragaria vesca HOM05D004545 ORTHO05D005420 3.0e-110 402.1 245 84.9
FAN14G2961 Fragaria x ananassa HOM05D004545 ORTHO05D005420 3.0e-110 402.1 245 84.9
Prupe.3G211000 Prunus persica HOM05D004545 ORTHO05D005420 5.2e-110 401.4 245 85.3
CiPaw.03G155600 Carya illinoinensis HOM05D004545 ORTHO05D005420 8.8e-110 400.6 245 85.3
QL08p030801 Quercus lobata HOM05D004545 ORTHO05D005420 8.8e-110 400.6 245 85.3
FAN02G2244 Fragaria x ananassa HOM05D004545 ORTHO05D005420 2.0e-109 399.4 258 81.4
Manes.12G070000 Manihot esculenta HOM05D004545 ORTHO05D005420 2.0e-109 399.4 244 85.7
FAN05G0363 Fragaria x ananassa HOM05D004545 ORTHO05D005420 2.6e-109 399.1 245 84.1
MD17G1103700 Malus domestica HOM05D004545 ORTHO05D005420 2.6e-109 399.1 245 83.7
RcHm_v2.0_Chr2g0158271 Rosa chinensis HOM05D004545 ORTHO05D005420 2.6e-109 399.1 245 84.9
Gohir.D07G193600 Gossypium hirsutum HOM05D004545 ORTHO05D005420 7.5e-109 397.5 245 84.5
CANSAT64G0134 Cannabis sativa HOM05D004545 ORTHO05D005420 9.7e-109 397.1 245 84.9
Psat7g206840 Pisum sativum HOM05D004545 ORTHO05D005420 9.7e-109 397.1 257 82.1
Gorai.001G216700 Gossypium raimondii HOM05D004545 ORTHO05D005420 2.2e-108 396.0 245 84.1
MD09G1113600 Malus domestica HOM05D004545 ORTHO05D005420 2.2e-108 396.0 245 83.3
Gohir.A07G187100 Gossypium hirsutum HOM05D004545 ORTHO05D005420 2.8e-108 395.6 245 84.1
Thecc.01G181500 Theobroma cacao HOM05D004545 ORTHO05D005420 3.7e-108 395.2 245 84.1
COL.COLO4_21869 Corchorus olitorius HOM05D004545 ORTHO05D005420 6.3e-108 394.4 245 84.5
Duzib133G1216 Durio zibethinus HOM05D004545 ORTHO05D005420 8.2e-108 394.0 247 83.8
CsaV3_6G015340 Cucumis sativus L. HOM05D004545 ORTHO05D005420 1.1e-107 393.7 245 84.1
Atru.chr6.3251 Acer truncatum HOM05D004545 ORTHO05D005420 1.8e-107 392.9 245 83.3
PGR142G4169 Punica granatum HOM05D004545 ORTHO05D005420 1.8e-107 392.9 246 82.1
Sed0009821 Sechium edule HOM05D004545 ORTHO05D005420 2.4e-107 392.5 245 83.7
Hma1.2p1_0177F.1_g078020 Hydrangea macrophylla HOM05D004545 ORTHO05D005420 3.1e-107 392.1 245 83.3
MELO3C019739.2 Cucumis melo HOM05D004545 ORTHO05D005420 4.1e-107 391.7 245 83.7
GSVIVG01030499001 Vitis vinifera HOM05D004545 ORTHO05D005420 5.3e-107 391.3 245 83.3
CiPaw.04G110900 Carya illinoinensis HOM05D004545 ORTHO05D005420 2.0e-106 389.4 245 82.0
Cpa.g.sc132.18 Carica papaya HOM05D004545 ORTHO05D005420 3.5e-106 388.7 245 83.7
Eucgr.K00758 Eucalyptus grandis HOM05D004545 ORTHO05D005420 5.9e-106 387.9 247 82.6
TWI18G1088 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 2.2e-105 386.0 245 83.7
CSS0044911 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 2.9e-105 385.6 245 82.4
Ciclev10016078m.g Citrus clementina HOM05D004545 ORTHO05D005420 6.5e-105 384.4 247 83.0
Sed0012432 Sechium edule HOM05D004545 ORTHO05D005420 6.5e-105 384.4 247 83.0
ClCG02G018050 Citrullus lanatus HOM05D004545 ORTHO05D005420 8.5e-105 384.0 255 80.4
CSS0041882 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 1.1e-104 383.6 245 82.0
TAR626G1663 Trochodendron aralioides HOM05D004545 ORTHO05D005420 2.5e-104 382.5 245 79.2
vmacro12662 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 7.2e-104 380.9 248 81.9
Sabra02G0172100 Salix brachista HOM05D004545 ORTHO05D005420 9.4e-104 380.6 244 82.4
TWI36G1393 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 1.6e-103 379.8 245 82.4
Actinidia10802 Actinidia chinensis HOM05D004545 ORTHO05D005420 2.7e-103 379.0 245 81.2
THA.LOC104826135 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 6.1e-103 377.9 245 81.6
AUR62018128 Chenopodium quinoa HOM05D004545 ORTHO05D005420 1.0e-102 377.1 246 80.5
AUR62034461 Chenopodium quinoa HOM05D004545 ORTHO05D005420 1.4e-102 376.7 246 80.1
Potri.002G225100 Populus trichocarpa HOM05D004545 ORTHO05D005420 1.4e-102 376.7 244 82.0
Dinv08724 Davidia involucrata HOM05D004545 ORTHO05D005420 2.3e-102 375.9 245 80.8
EL10Ac7g17335 Beta vulgaris HOM05D004545 ORTHO05D005420 1.2e-101 373.6 245 80.0
Cc04_g08550 Coffea canephora HOM05D004545 ORTHO05D005420 1.2e-101 373.6 242 81.0
Ah.01g004130 Amaranthus hybridus HOM05D004545 ORTHO05D005420 2.0e-101 372.9 248 80.2
Solyc08g013990.3 Solanum lycopersicum HOM05D004545 ORTHO05D005420 2.0e-101 372.9 243 79.8
CAN.G466.2 Capsicum annuum HOM05D004545 ORTHO05D005420 4.4e-101 371.7 245 80.0
Nitab4.5_0005035g0030 Nicotiana tabacum HOM05D004545 ORTHO05D005420 7.5e-101 370.9 245 78.8
Sc12g0002080 Simmondsia chinensis HOM05D004545 ORTHO05D005420 7.5e-101 370.9 245 81.2
Nitab4.5_0000242g0090 Nicotiana tabacum HOM05D004545 ORTHO05D005420 9.8e-101 370.5 245 78.8
Potri.014G158000 Populus trichocarpa HOM05D004545 ORTHO05D005420 9.8e-101 370.5 244 79.9
Nitab4.5_0008425g0010 Nicotiana tabacum HOM05D004545 ORTHO05D005420 1.7e-100 369.8 245 78.8
BcaC02g11365 Brassica carinata HOM05D004545 ORTHO05D005420 2.2e-100 369.4 231 80.5
Hund12365 Selenicereus undatus HOM05D004545 ORTHO05D005420 3.7e-100 368.6 247 79.4
Lsat_1_v5_gn_5_124360 Lactuca sativa HOM05D004545 ORTHO05D005420 6.3e-100 367.9 244 80.3
Aa31LG5G4640 Aethionema arabicum HOM05D004545 ORTHO05D005420 8.3e-100 367.5 233 79.8
AL120U10020 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 8.3e-100 367.5 227 82.8
Medtr1g102640 Medicago truncatula HOM05D004545 ORTHO05D005420 8.3e-100 367.5 228 85.5
AL7G46590 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 1.1e-99 367.1 226 83.2
Oeu008952.2 Olea europaea HOM05D004545 ORTHO05D005420 1.1e-99 367.1 245 78.8
Peaxi162Scf00075g01538 Petunia axillaris HOM05D004545 ORTHO05D005420 1.4e-99 366.7 247 80.6
BcaC01g05879 Brassica carinata HOM05D004545 ORTHO05D005420 1.8e-99 366.3 244 78.7
A03p18410 Brassica napus HOM05D004545 ORTHO05D005420 1.8e-99 366.3 244 78.7
C03p21500 Brassica napus HOM05D004545 ORTHO05D005420 1.8e-99 366.3 244 78.7
Sp4g15340 Schrenkiella parvula HOM05D004545 ORTHO05D005420 1.8e-99 366.3 226 82.7
THA.LOC104816035 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 1.8e-99 366.3 216 86.6
AT2G32980 Arabidopsis thaliana HOM05D004545 ORTHO05D005420 7.0e-99 364.4 226 82.3
SGA_v2.0_scaffold106G30667 Striga asiatica HOM05D004545 ORTHO05D005420 9.1e-99 364.0 245 77.1
TAR624G0840 Trochodendron aralioides HOM05D004545 ORTHO05D005420 1.2e-98 363.6 247 78.1
C04p16530 Brassica napus HOM05D004545 ORTHO05D005420 2.0e-98 362.8 235 78.7
BraA05t20202Z Brassica rapa HOM05D004545 ORTHO05D005420 2.0e-98 362.8 244 77.0
Carub.0004s1443 Capsella rubella HOM05D004545 ORTHO05D005420 2.0e-98 362.8 226 81.9
Thhalv10016881m.g Eutrema salsugineum HOM05D004545 ORTHO05D005420 3.5e-98 362.1 226 81.9
HanXRQChr10g0306541 Helianthus annuus HOM05D004545 ORTHO05D005420 3.5e-98 362.1 242 79.8
Sabra14G0120000 Salix brachista HOM05D004545 ORTHO05D005420 3.5e-98 362.1 244 78.3
BraA03t11104Z Brassica rapa HOM05D004545 ORTHO05D005420 1.0e-97 360.5 262 74.0
HanXRQChr12g0373651 Helianthus annuus HOM05D004545 ORTHO05D005420 1.0e-97 360.5 242 80.2
DCAR_027885 Daucus carota HOM05D004545 ORTHO05D005420 1.3e-97 360.1 249 76.7
CARHR126930 Cardamine hirsuta HOM05D004545 ORTHO05D005420 8.6e-97 357.5 226 80.5
Migut.L01518 Erythranthe guttata HOM05D004545 ORTHO05D005420 8.6e-97 357.5 244 77.5
ECA234G0510 Erigeron canadensis HOM05D004545 ORTHO05D005420 1.1e-96 357.1 239 80.3
A05p12640 Brassica napus HOM05D004545 ORTHO05D005420 1.5e-96 356.7 246 75.6
BolC3t14537H Brassica oleracea HOM05D004545 ORTHO05D005420 1.9e-96 356.3 263 72.2
Rhsim04G0050700 Rhododendron simsii HOM05D004545 ORTHO05D005420 2.5e-96 355.9 298 67.4
PSO339G5690 Papaver somniferum HOM05D004545 ORTHO05D005420 4.2e-96 355.1 245 76.7
BcaB01g03956 Brassica carinata HOM05D004545 ORTHO05D005420 1.2e-95 353.6 248 76.2
PSO384G3673 Papaver somniferum HOM05D004545 ORTHO05D005420 1.6e-95 353.2 245 76.3
unitig_0.g926 Utricularia gibba HOM05D004545 ORTHO05D005420 2.1e-95 352.8 245 76.3
Aqoxy4G01985 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 6.1e-95 351.3 244 74.2
PSO339G1796 Papaver somniferum HOM05D004545 ORTHO05D005420 1.4e-94 350.1 245 75.9
Peaxi162Scf00102g00840 Petunia axillaris HOM05D004545 ORTHO05D005420 3.0e-94 349.0 241 78.4
Migut.H01332 Erythranthe guttata HOM05D004545 ORTHO05D005420 4.0e-94 348.6 244 74.2
PSO384G1132 Papaver somniferum HOM05D004545 ORTHO05D005420 4.0e-94 348.6 245 75.1
BcaB02g10513 Brassica carinata HOM05D004545 ORTHO05D005420 8.9e-94 347.4 234 77.4
Psat6g203400 Pisum sativum HOM05D004545 ORTHO05D005420 1.2e-93 347.1 249 75.9
PSO384G1091 Papaver somniferum HOM05D004545 ORTHO05D005420 2.0e-93 346.3 245 74.7
Aqoxy2G01628 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 5.7e-93 344.7 218 81.2
Lj1A780G55 Lonicera japonica HOM05D004545 ORTHO05D005420 1.7e-89 333.2 206 84.5
ATR0051G053 Amborella trichopoda HOM05D004545 ORTHO05D005420 5.0e-89 331.6 223 75.3
MBI15_g08964_MAGBIO Magnolia biondii HOM05D004545 ORTHO05D005420 5.0e-89 331.6 248 73.4
BolC4t23201H Brassica oleracea HOM05D004545 ORTHO05D005420 1.6e-87 326.6 249 69.5
HPP92_013545 Vanilla planifolia HOM05D004545 ORTHO05D005420 1.6e-87 326.6 226 74.8
vmacro09357 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 1.2e-85 320.5 204 83.8
Zm00001eb413680 Zea mays HOM05D004545 ORTHO05D005420 2.2e-84 316.2 222 73.4
Os08g0204800 Oryza sativa ssp. japonica HOM05D004545 ORTHO05D005420 2.9e-84 315.8 223 74.4
AL7G46610 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 9.2e-83 310.8 226 73.9
arahy.Tifrunner.gnm1.ann1.1MU1EY Arachis hypogaea HOM05D004545 ORTHO05D005420 3.5e-82 308.9 225 75.6
FAN09G3372 Fragaria x ananassa HOM05D004545 ORTHO05D005420 8.6e-81 304.3 180 86.7
DCAR_021142 Daucus carota HOM05D004545 ORTHO05D005420 4.3e-80 302.0 244 69.7
AL4G28510 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 1.4e-78 297.0 226 69.9
Nn1g08031 Nelumbo nucifera HOM05D004545 ORTHO05D005420 5.2e-78 295.0 180 82.8
SGA_v2.0_scaffold51G18651 Striga asiatica HOM05D004545 ORTHO05D005420 3.4e-77 292.4 216 74.1
Lsat_1_v5_gn_9_105760 Lactuca sativa HOM05D004545 ORTHO05D005420 4.1e-75 285.4 217 68.7
SMO340G0284 Selaginella moellendorffii HOM05D004545 ORTHO05D005420 1.2e-71 273.9 223 60.5
Pp3c6_19990 Physcomitrium patens HOM05D004545 ORTHO05D005420 1.6e-71 273.5 229 60.3
HanXRQChr03g0076011 Helianthus annuus HOM05D004545 ORTHO05D005420 2.8e-71 272.7 209 67.5
CSS0021334 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 6.2e-71 271.6 161 86.3
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 3.1e-70 269.2 222 63.1
Mapoly0045s0122 Marchantia polymorpha HOM05D004545 ORTHO05D005420 4.0e-70 268.9 236 60.6
AagrBONN_evm.TU.Sc2ySwM_228.751 Anthoceros agrestis HOM05D004545 ORTHO05D005420 1.2e-69 267.3 226 61.9
HPP92_013592 Vanilla planifolia HOM05D004545 ORTHO05D005420 2.9e-68 262.7 180 73.9
CDE05G2122 Ceratophyllum demersum HOM05D004545 ORTHO05D005420 5.1e-65 251.9 224 60.7
SEGI_00177 Sequoiadendron giganteum HOM05D004545 ORTHO05D005420 6.6e-65 251.5 178 71.3
RcHm_v2.0_Chr1g0329411 Rosa chinensis HOM05D004545 ORTHO05D005420 1.1e-59 234.2 257 56.4
Nn6g32193 Nelumbo nucifera HOM05D004545 ORTHO05D005420 1.7e-57 226.9 164 73.2
Oeu040086.1 Olea europaea HOM05D004545 ORTHO05D005420 1.7e-57 226.9 199 63.8
Sopen08g004850 Solanum pennellii HOM05D004545 ORTHO05D005420 1.9e-56 223.4 140 82.1
Nitab4.5_0000185g0270 Nicotiana tabacum HOM05D004545 ORTHO05D005420 2.4e-54 216.5 130 83.8
CBR_g58792 Chara braunii HOM05D004545 ORTHO05D005420 1.1e-48 197.6 228 45.6
Gohir.D10G162700 Gossypium hirsutum HOM05D004545 ORTHO05D005420 1.1e-48 197.6 150 70.0
RcHm_v2.0_Chr2g0158231 Rosa chinensis HOM05D004545 ORTHO05D005420 3.8e-44 182.6 154 67.5
Gohir.D10G109450 Gossypium hirsutum HOM05D004545 ORTHO05D005420 7.4e-40 168.3 104 80.8
Hund15353 Selenicereus undatus HOM05D004545 ORTHO05D005420 7.4e-40 168.3 121 77.7
Nn6g33383 Nelumbo nucifera HOM05D004545 ORTHO05D005420 1.1e-32 144.4 82 86.6
Sopen08g004840 Solanum pennellii HOM05D004545 ORTHO05D005420 7.4e-32 141.7 96 75.0
Gorai.011G120100 Gossypium raimondii HOM05D004545 ORTHO05D005420 1.6e-31 140.6 80 83.8
RcHm_v2.0_Chr2g0158241 Rosa chinensis HOM05D004545 ORTHO05D005420 1.9e-27 127.1 64 95.3
RcHm_v2.0_Chr1g0361251 Rosa chinensis HOM05D004545 ORTHO05D005420 2.7e-18 96.7 67 77.6
RcHm_v2.0_Chr2g0158191 Rosa chinensis HOM05D004545 ORTHO05D005420 1.7e-15 87.4 88 56.8
Medtr2g005760 Medicago truncatula HOM05D004545 ORTHO05D005420 2.0e-13 80.5 64 70.3
Nn6g33384 Nelumbo nucifera HOM05D004545 ORTHO05D005420 1.7e-12 77.4 62 62.9
HPP92_013591 Vanilla planifolia HOM05D004545 ORTHO05D005420 3.6e-10 69.7 46 78.3
FAN09G2083 Fragaria x ananassa HOM05D004545 ORTHO05D005420 5.1e-09 65.9 49 69.4


User provided reference genes

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