Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0014228 Lotus japonicus HOM05D008283 ORTHO05D009928 1.1e-38 162.9 86 100.0
LjContig00439g0010892 Lotus japonicus HOM05D008283 ORTHO05D009928 1.1e-38 162.9 86 100.0
Nitab4.5_0004681g0020 Nicotiana tabacum HOM05D008283 ORTHO05D009928 1.6e-18 95.9 77 64.9
Nitab4.5_0002426g0010 Nicotiana tabacum HOM05D004133 ORTHO05D004683 1.8e-17 92.4 68 72.1
Nitab4.5_0001788g0210 Nicotiana tabacum HOM05D008283 ORTHO05D009928 4.0e-17 91.3 77 62.3
Medtr1g041535 Medicago truncatula HOM05D008283 ORTHO05D009928 1.5e-16 89.4 77 57.1
arahy.Tifrunner.gnm1.ann1.31RDDR Arachis hypogaea HOM05D008283 ORTHO05D009928 1.7e-15 85.9 84 54.8
arahy.Tifrunner.gnm1.ann1.UF4NHZ Arachis hypogaea HOM05D008283 ORTHO05D009928 1.7e-15 85.9 84 54.8
arahy.Tifrunner.gnm1.ann1.X4VFKB Arachis hypogaea HOM05D008283 ORTHO05D009928 1.7e-15 85.9 84 54.8
Lalb_Chr00c29g0407761 Lupinus albus HOM05D008283 ORTHO05D009928 3.7e-15 84.7 79 54.4
Lalb_Chr00c29g0408321 Lupinus albus HOM05D008283 ORTHO05D009928 3.7e-15 84.7 79 54.4
Nitab4.5_0000280g0170 Nicotiana tabacum HOM05D008283 ORTHO05D009928 8.3e-15 83.6 77 57.1
Ah.10g028250 Amaranthus hybridus HOM05D008283 ORTHO05D009928 1.4e-14 82.8 76 59.2
Ah.10g028800 Amaranthus hybridus HOM05D008283 ORTHO05D009928 1.4e-14 82.8 76 59.2
AUR62042329 Chenopodium quinoa HOM05D008283 ORTHO05D009928 1.4e-14 82.8 76 59.2
AUR62031778 Chenopodium quinoa HOM05D008283 ORTHO05D009928 7.0e-14 80.5 76 59.2
Nn1g10067 Nelumbo nucifera HOM05D008283 ORTHO05D009928 1.2e-13 79.7 79 50.6
unitig_87.g27963 Utricularia gibba HOM05D008283 ORTHO05D009928 1.6e-13 79.3 73 53.4
TPR.G935 Trifolium pratense HOM05D008283 ORTHO05D009928 2.0e-13 79.0 81 49.4
Gohir.A11G200616 Gossypium hirsutum HOM05D008283 ORTHO05D009928 3.5e-13 78.2 68 54.4
Nitab4.5_0002418g0110 Nicotiana tabacum HOM05D008283 ORTHO05D009928 3.5e-13 78.2 69 56.5
EL10As7g23793 Beta vulgaris HOM05D004909 ORTHO05D009928 7.7e-13 77.0 78 51.3
Ca_17166_v3 Cicer arietinum L. HOM05D008283 ORTHO05D009928 3.8e-12 74.7 76 47.4
Ca_30751_v3 Cicer arietinum L. HOM05D008283 ORTHO05D009928 3.8e-12 74.7 76 47.4
HanXRQChr15g0485981 Helianthus annuus HOM05D008283 ORTHO05D009928 3.8e-12 74.7 77 51.9
AUR62002477 Chenopodium quinoa HOM05D008283 ORTHO05D009928 5.0e-12 74.3 76 52.6
RcHm_v2.0_MTg0498941 Rosa chinensis HOM05D008283 ORTHO05D009928 5.0e-12 74.3 76 50.0
BcaC05g26890 Brassica carinata HOM05D008283 ORTHO05D009928 6.6e-12 73.9 79 49.4
BolSC28t60335H Brassica oleracea HOM05D008283 ORTHO05D009928 6.6e-12 73.9 79 49.4
BolSC28t60401H Brassica oleracea HOM05D008283 ORTHO05D009928 6.6e-12 73.9 79 49.4
BraSC48t46259Z Brassica rapa HOM05D008283 ORTHO05D009928 6.6e-12 73.9 79 49.4
BraSC77t46668Z Brassica rapa HOM05D008283 ORTHO05D009928 6.6e-12 73.9 79 49.4
HanXRQChr03g0069121 Helianthus annuus HOM05D008283 ORTHO05D009928 8.6e-12 73.6 77 51.9
Nitab4.5_0000362g0080 Nicotiana tabacum HOM05D008283 ORTHO05D009928 1.1e-11 73.2 70 54.3
HanXRQChr04g0098351 Helianthus annuus HOM05D008283 ORTHO05D009928 1.9e-11 72.4 77 51.9
HanXRQChr17g0561471 Helianthus annuus HOM05D008283 ORTHO05D009928 1.9e-11 72.4 77 51.9
HanXRQMTg0579231 Helianthus annuus HOM05D008283 ORTHO05D009928 1.9e-11 72.4 77 51.9
HanXRQMTg0579701 Helianthus annuus HOM05D008283 ORTHO05D009928 1.9e-11 72.4 77 51.9
Nitab4.5_0000172g0940 Nicotiana tabacum HOM05D008283 ORTHO05D009928 2.5e-11 72.0 62 67.7
Nitab4.5_0000664g0220 Nicotiana tabacum HOM05D008283 ORTHO05D009928 1.2e-10 69.7 66 54.5
PGSC0003DMG400017853 Solanum tuberosum HOM05D008283 ORTHO05D009928 1.2e-10 69.7 78 46.2
RcHm_v2.0_Chr3g0453191 Rosa chinensis HOM05D008283 ORTHO05D009928 4.7e-10 67.8 74 45.9
FAN17G2731 Fragaria x ananassa HOM05D008283 ORTHO05D009928 1.0e-09 66.6 80 45.0
Hma1.2p1_0904F.1_g235230 Hydrangea macrophylla HOM05D008283 ORTHO05D009928 1.4e-09 66.2 57 59.6
Nitab4.5_0007800g0030 Nicotiana tabacum HOM05D008283 ORTHO05D009928 1.4e-09 66.2 43 72.1
Nitab4.5_0001121g0220 Nicotiana tabacum HOM05D008283 ORTHO05D009928 1.8e-09 65.9 60 60.0
FAN02G3211 Fragaria x ananassa HOM05D000160 ORTHO05D000914 1.2e-08 63.2 85 40.0
PGR028G0007 Punica granatum HOM05D008283 ORTHO05D009928 1.2e-08 63.2 68 47.1
FvH4_6g04760 Fragaria vesca HOM05D000160 ORTHO05D000914 2.0e-08 62.4 83 39.8
Nn1g10073 Nelumbo nucifera HOM05D008283 ORTHO05D009928 3.4e-08 61.6 78 38.5
Nitab4.5_0001985g0050 Nicotiana tabacum HOM05D008283 ORTHO05D009928 3.4e-08 61.6 42 71.4
FAN14G2913 Fragaria x ananassa HOM05D008283 ORTHO05D009928 4.4e-08 61.2 72 41.7
FAN09G0853 Fragaria x ananassa HOM05D000160 ORTHO05D000914 5.7e-08 60.8 74 41.9
AT2G07820 Arabidopsis thaliana HOM05D008283 ORTHO05D009928 7.5e-08 60.5 68 48.5
ATR0273G001 Amborella trichopoda HOM05D017454 ORTHO05D009928 1.3e-07 59.7 70 45.7
Solyc00g210860.1 Solanum lycopersicum HOM05D010940 ORTHO05D009928 1.7e-07 59.3 81 48.1
Solyc08g036550.1 Solanum lycopersicum HOM05D010940 ORTHO05D009928 1.7e-07 59.3 81 48.1
FAN09G4124 Fragaria x ananassa HOM05D000160 ORTHO05D000914 1.4e-06 56.2 77 41.6
FAN22G2261 Fragaria x ananassa HOM05D008283 ORTHO05D009928 1.4e-06 56.2 80 40.0
Medtr8g059740 Medicago truncatula HOM05D008283 ORTHO05D009928 9.2e-06 53.5 42 61.9


User provided reference genes

Program Settings