Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0013810 Lotus japonicus HOM05D005722 ORTHO05D007934 0.0e+00 1083.6 554 100.0
Medtr1g062130 Medicago truncatula HOM05D005722 ORTHO05D007934 5.1e-251 870.9 565 78.9
Glyma.13G147700 Glycine max HOM05D005722 ORTHO05D007934 3.8e-246 854.7 574 76.8
Lalb_Chr02g0155431 Lupinus albus HOM05D005722 ORTHO05D007934 4.2e-245 851.3 563 76.9
Glyma.10G063100 Glycine max HOM05D005722 ORTHO05D007934 5.5e-245 850.9 572 76.9
Ca_04564_v3 Cicer arietinum L. HOM05D005722 ORTHO05D007934 1.6e-244 849.4 548 79.4
Psat6g077240 Pisum sativum HOM05D005722 ORTHO05D007934 2.0e-239 832.4 556 76.6
Lj1g0006800 Lotus japonicus HOM05D005722 ORTHO05D007934 7.7e-239 830.5 567 73.9
Phvul.007G226300 Phaseolus vulgaris HOM05D005722 ORTHO05D007934 1.0e-238 830.1 573 75.2
TPR.G22453 Trifolium pratense HOM05D005722 ORTHO05D007934 1.2e-236 823.2 553 77.6
VMungo0720G2103 Vigna mungo HOM05D005722 ORTHO05D007934 3.6e-236 821.6 510 79.8
Lalb_Chr25g0288811 Lupinus albus HOM05D005722 ORTHO05D007934 7.5e-234 813.9 575 73.0
TPR.G31667 Trifolium pratense HOM05D005722 ORTHO05D007934 2.2e-230 802.4 563 72.1
Duzib128G0866 Durio zibethinus HOM05D005722 ORTHO05D007934 1.1e-229 800.0 569 72.4
arahy.Tifrunner.gnm1.ann1.D7QF3J Arachis hypogaea HOM05D005722 ORTHO05D007934 3.6e-228 795.0 526 75.7
arahy.Tifrunner.gnm1.ann1.P0W3IN Arachis hypogaea HOM05D005722 ORTHO05D007934 3.6e-228 795.0 526 75.7
COL.COLO4_22250 Corchorus olitorius HOM05D005722 ORTHO05D007934 3.6e-228 795.0 487 80.1
Hma1.2p1_0547F.1_g176330 Hydrangea macrophylla HOM05D005722 ORTHO05D007934 8.0e-228 793.9 542 73.8
Gohir.A09G143300 Gossypium hirsutum HOM05D005722 ORTHO05D007934 1.8e-227 792.7 567 70.7
CSS0018899 Camellia sinensis var. sinensis HOM05D005722 ORTHO05D007934 4.0e-227 791.6 576 69.4
Potri.006G119500 Populus trichocarpa HOM05D005722 ORTHO05D007934 5.2e-227 791.2 563 72.5
Migut.J00472 Erythranthe guttata HOM05D005722 ORTHO05D007934 6.8e-227 790.8 555 72.6
Psat3g038760 Pisum sativum HOM05D005722 ORTHO05D007934 1.5e-226 789.6 544 73.3
CSS0022139 Camellia sinensis var. sinensis HOM05D005722 ORTHO05D007934 3.4e-226 788.5 489 77.9
Cfa016476 Carpinus fangiana HOM05D005722 ORTHO05D007934 3.4e-226 788.5 560 71.8
FvH4_6g17170 Fragaria vesca HOM05D005722 ORTHO05D007934 3.4e-226 788.5 493 77.9
Prupe.7G123300 Prunus persica HOM05D005722 ORTHO05D007934 9.8e-226 786.9 576 70.5
Gorai.006G160000 Gossypium raimondii HOM05D005722 ORTHO05D007934 3.7e-225 785.0 570 69.8
Manes.09G048478 Manihot esculenta HOM05D005722 ORTHO05D007934 3.7e-225 785.0 542 73.1
Sabra06G0094100 Salix brachista HOM05D005722 ORTHO05D007934 4.8e-225 784.6 489 78.9
Cc06_g04740 Coffea canephora HOM05D005722 ORTHO05D007934 6.3e-225 784.3 487 78.4
FAN05G1451 Fragaria x ananassa HOM05D005722 ORTHO05D007934 1.1e-224 783.5 536 72.8
FAN05G4610 Fragaria x ananassa HOM05D005722 ORTHO05D007934 1.1e-224 783.5 536 72.8
Thecc.05G075200 Theobroma cacao HOM05D005722 ORTHO05D007934 1.1e-224 783.5 537 73.2
Medtr7g102810 Medicago truncatula HOM05D005722 ORTHO05D007934 1.8e-224 782.7 471 80.9
RcHm_v2.0_Chr3g0471261 Rosa chinensis HOM05D005722 ORTHO05D007934 1.8e-224 782.7 572 70.1
Atru.chr8.1708 Acer truncatum HOM05D005722 ORTHO05D007934 7.0e-224 780.8 565 70.4
MD12G1103200 Malus domestica HOM05D005722 ORTHO05D007934 1.6e-223 779.6 550 71.5
Rhsim03G0086400 Rhododendron simsii HOM05D005722 ORTHO05D007934 4.5e-223 778.1 563 70.9
CiPaw.09G004900 Carya illinoinensis HOM05D005722 ORTHO05D007934 7.7e-223 777.3 492 77.2
QL07p041452 Quercus lobata HOM05D005722 ORTHO05D007934 1.7e-222 776.2 571 70.1
vmacro23004 Vaccinium macrocarpon HOM05D005722 ORTHO05D007934 1.7e-222 776.2 488 78.5
CANSAT56G0690 Cannabis sativa HOM05D005722 ORTHO05D007934 2.3e-222 775.8 550 71.5
TWI74G0410 Tripterygium wilfordii HOM05D005722 ORTHO05D007934 3.8e-222 775.0 566 69.6
Peaxi162Scf00138g00041 Petunia axillaris HOM05D005722 ORTHO05D007934 6.6e-222 774.2 488 77.7
TAR623G1222 Trochodendron aralioides HOM05D005722 ORTHO05D007934 6.6e-222 774.2 570 69.5
PSO063G5110 Papaver somniferum HOM05D005722 ORTHO05D007934 5.5e-221 771.2 570 67.9
PSO339G6299 Papaver somniferum HOM05D005722 ORTHO05D007934 5.5e-221 771.2 570 68.9
Aqoxy1G01041 Aquilegia oxysepala HOM05D005722 ORTHO05D007934 1.6e-220 769.6 562 69.9
Ah.08g211270 Amaranthus hybridus HOM05D005722 ORTHO05D007934 2.8e-220 768.8 524 73.7
MSTRG.19206 Avicennia marina HOM05D005722 ORTHO05D007934 2.8e-220 768.8 568 69.4
Cpa.g.sc5.129 Carica papaya HOM05D005722 ORTHO05D007934 1.0e-219 766.9 488 75.6
EL10Ac7g16706 Beta vulgaris HOM05D005722 ORTHO05D007934 3.0e-219 765.4 487 78.0
PGR004G2571 Punica granatum HOM05D005722 ORTHO05D007934 3.0e-219 765.4 568 69.2
Nn2g13890 Nelumbo nucifera HOM05D005722 ORTHO05D007934 2.0e-218 762.7 564 68.8
PGSC0003DMG400003879 Solanum tuberosum HOM05D005722 ORTHO05D007934 5.7e-218 761.1 488 76.6
Nitab4.5_0004731g0050 Nicotiana tabacum HOM05D005722 ORTHO05D007934 1.3e-217 760.0 492 75.8
AUR62042706 Chenopodium quinoa HOM05D005722 ORTHO05D007934 6.3e-217 757.7 484 76.7
CAN.G1038.3 Capsicum annuum HOM05D005722 ORTHO05D007934 2.4e-216 755.7 566 68.4
Sopen09g003380 Solanum pennellii HOM05D005722 ORTHO05D007934 5.4e-216 754.6 488 74.8
AUR62026979 Chenopodium quinoa HOM05D005722 ORTHO05D007934 7.0e-216 754.2 556 69.2
Ciclev10011424m.g Citrus clementina HOM05D005722 ORTHO05D007934 9.2e-216 753.8 494 75.3
DCAR_015016 Daucus carota HOM05D005722 ORTHO05D007934 1.7e-214 749.6 470 76.4
BraA03t09503Z Brassica rapa HOM05D005722 ORTHO05D007934 2.9e-214 748.8 484 75.0
CARHR209770 Cardamine hirsuta HOM05D005722 ORTHO05D007934 5.0e-214 748.0 485 73.8
A03p01230 Brassica napus HOM05D005722 ORTHO05D007934 6.6e-214 747.7 484 75.0
C03p01590 Brassica napus HOM05D005722 ORTHO05D007934 1.1e-213 746.9 484 74.6
BolC3t12711H Brassica oleracea HOM05D005722 ORTHO05D007934 1.9e-213 746.1 484 74.6
SGA_v2.0_scaffold75G24819 Striga asiatica HOM05D005722 ORTHO05D007934 4.3e-213 745.0 486 74.3
Sp6g39190 Schrenkiella parvula HOM05D005722 ORTHO05D007934 5.6e-213 744.6 484 74.8
Aa31LG1G21640 Aethionema arabicum HOM05D005722 ORTHO05D007934 7.3e-213 744.2 486 74.3
Thhalv10015725m.g Eutrema salsugineum HOM05D005722 ORTHO05D007934 1.2e-212 743.4 485 74.2
Carub.0006s0238 Capsella rubella HOM05D005722 ORTHO05D007934 4.0e-211 738.4 485 73.4
AT5G03555 Arabidopsis thaliana HOM05D005722 ORTHO05D007934 8.9e-211 737.3 486 72.6
THA.LOC104816667 Tarenaya hassleriana HOM05D005722 ORTHO05D007934 8.9e-211 737.3 465 76.3
AL6G13040 Arabidopsis lyrata HOM05D005722 ORTHO05D007934 5.8e-210 734.6 486 72.2
SalBow3G1081 Salvia bowleyana HOM05D005722 ORTHO05D007934 7.5e-210 734.2 488 73.6
SalBow3G1392 Salvia bowleyana HOM05D005722 ORTHO05D007934 1.3e-209 733.4 488 73.4
Sc20g0005780 Simmondsia chinensis HOM05D005722 ORTHO05D007934 1.7e-209 733.0 488 73.6
Lsat_1_v5_gn_2_20401 Lactuca sativa HOM05D005722 ORTHO05D007934 1.1e-208 730.3 488 72.3
MBI18_g39612_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 5.4e-208 728.0 510 70.2
Solyc09g008550.4 Solanum lycopersicum HOM05D005722 ORTHO05D007934 1.2e-207 726.9 461 75.3
HanXRQChr14g0432851 Helianthus annuus HOM05D005722 ORTHO05D007934 1.0e-206 723.8 479 72.9
ClCG10G019670 Citrullus lanatus HOM05D005722 ORTHO05D007934 8.6e-206 720.7 479 71.8
ECA238G3369 Erigeron canadensis HOM05D005722 ORTHO05D007934 1.1e-205 720.3 484 71.9
unitig_578.g15784 Utricularia gibba HOM05D005722 ORTHO05D007934 3.3e-205 718.8 485 72.4
Gorai.006G160100 Gossypium raimondii HOM05D005722 ORTHO05D007934 2.8e-204 715.7 550 66.4
Gohir.D09G139600 Gossypium hirsutum HOM05D005722 ORTHO05D007934 4.7e-204 714.9 550 66.4
Gohir.D09G139500 Gossypium hirsutum HOM05D005722 ORTHO05D007934 1.8e-203 713.0 503 71.6
Haze_19473 Corylus avellana HOM05D005722 ORTHO05D007934 3.1e-203 712.2 436 80.0
Gohir.A09G143500 Gossypium hirsutum HOM05D005722 ORTHO05D007934 3.4e-202 708.8 550 66.2
MELO3C009405.2 Cucumis melo HOM05D005722 ORTHO05D007934 7.5e-202 707.6 559 65.3
FAN14G5091 Fragaria x ananassa HOM05D005722 ORTHO05D007934 7.5e-202 707.6 442 77.8
CsaV3_3G036500 Cucumis sativus L. HOM05D005722 ORTHO05D007934 5.4e-200 701.4 562 64.4
Sed0005717 Sechium edule HOM05D005722 ORTHO05D007934 7.0e-200 701.0 464 72.6
FAN02G1363 Fragaria x ananassa HOM05D005722 ORTHO05D007934 1.1e-195 687.2 447 75.8
Nitab4.5_0003906g0050 Nicotiana tabacum HOM05D005722 ORTHO05D007934 4.0e-195 685.3 492 70.7
Ca_30109_v3 Cicer arietinum L. HOM05D005722 ORTHO05D007934 2.6e-194 682.6 410 80.0
ATR0009G019 Amborella trichopoda HOM05D005722 ORTHO05D007934 2.3e-190 669.5 483 67.3
SEGI_35570 Sequoiadendron giganteum HOM05D005722 ORTHO05D007934 1.6e-188 663.3 478 64.6
GSVIVG01033705001 Vitis vinifera HOM05D005722 ORTHO05D007934 6.0e-183 644.8 562 62.5
Eucgr.A01597 Eucalyptus grandis HOM05D005722 ORTHO05D007934 3.0e-182 642.5 568 59.7
MBI18_g39457_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 5.1e-182 641.7 489 64.4
MBI18_g31623_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 1.5e-181 640.2 489 64.2
MBI18_g19054_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 4.3e-181 638.6 489 63.8
Dinv35829 Davidia involucrata HOM05D005722 ORTHO05D007934 2.0e-178 629.8 478 67.4
HPP92_025568 Vanilla planifolia HOM05D005722 ORTHO05D007934 5.8e-178 628.2 540 58.5
Cfa016468 Carpinus fangiana HOM05D005722 ORTHO05D007934 7.6e-178 627.9 447 70.9
Zm00001eb249990 Zea mays HOM05D005722 ORTHO05D007934 1.9e-176 623.2 479 62.8
Os02g0666700 Oryza sativa ssp. japonica HOM05D005722 ORTHO05D007934 2.3e-174 616.3 469 63.5
Cc06_g04750 Coffea canephora HOM05D005722 ORTHO05D007934 7.6e-170 601.3 486 62.8
CDE08G1312 Ceratophyllum demersum HOM05D005722 ORTHO05D007934 1.1e-163 580.9 462 65.4
Pp3c14_20990 Physcomitrium patens HOM05D005722 ORTHO05D007934 5.3e-163 578.6 475 57.9
Mapoly0002s0120 Marchantia polymorpha HOM05D005722 ORTHO05D007934 2.2e-161 573.2 479 55.7
Pp3c1_30640 Physcomitrium patens HOM05D005722 ORTHO05D007934 1.8e-158 563.5 475 56.8
SMO115G0026 Selaginella moellendorffii HOM05D005722 ORTHO05D007934 2.1e-156 556.6 480 56.9
Actinidia26637 Actinidia chinensis HOM05D005722 ORTHO05D007934 8.5e-145 518.1 431 63.6
Cre09.g389356 Chlamydomonas reinhardtii HOM05D005722 ORTHO05D007934 9.4e-144 514.6 491 50.7
Lj2P123T37 Lonicera japonica HOM05D005722 ORTHO05D007934 5.3e-139 498.8 319 76.5
Actinidia28931 Actinidia chinensis HOM05D005722 ORTHO05D007934 1.2e-135 487.6 404 63.6
Sc20g0005800 Simmondsia chinensis HOM05D005722 ORTHO05D007934 4.1e-131 472.6 327 71.6
MCO11G702 Micromonas commoda HOM05D005722 ORTHO05D007934 2.0e-122 443.7 497 46.5
PRCOL_00006021 Prasinoderma coloniale HOM05D005722 ORTHO05D007934 1.9e-120 437.2 490 46.1
Haze_19472 Corylus avellana HOM05D005722 ORTHO05D007934 2.9e-68 263.8 163 76.1
Cfa025019 Carpinus fangiana HOM05D005722 ORTHO05D123305 1.5e-61 241.5 478 31.2
Haze_02843 Corylus avellana HOM05D005722 ORTHO05D029153 3.4e-53 213.8 137 75.2
Sc20g0005790 Simmondsia chinensis HOM05D005722 ORTHO05D029153 2.8e-39 167.5 98 78.6
Pp3s34_270 Physcomitrium patens HOM05D005722 ORTHO05D317165 3.8e-36 157.1 427 25.5
TPR.G39511 Trifolium pratense HOM05D005722 ORTHO05D029153 7.7e-29 132.9 70 85.7
Lsat_1_v5_gn_4_152401 Lactuca sativa HOM05D005722 ORTHO05D007934 2.5e-24 117.9 80 77.5
MCO11G808 Micromonas commoda HOM05D005722 ORTHO05D268580 1.5e-16 92.0 488 23.4
MCO10G252 Micromonas commoda HOM05D005722 ORTHO05D270642 6.3e-15 86.7 419 27.2
FAN14G5603 Fragaria x ananassa HOM05D005722 ORTHO05D029153 1.0e-12 79.3 50 74.0
Cfa016469 Carpinus fangiana HOM05D005722 ORTHO05D125356 1.8e-06 58.5 28 92.9


User provided reference genes

Program Settings