Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0013750 Lotus japonicus HOM05D004923 ORTHO05D005940 1.0e-263 913.3 638 100.0
Glyma.10G157900 Glycine max HOM05D004923 ORTHO05D005940 2.6e-81 307.4 681 38.3
Lalb_Chr02g0148481 Lupinus albus HOM05D004923 ORTHO05D005940 2.4e-79 300.8 653 37.4
Ca_10079_v3 Cicer arietinum L. HOM05D004923 ORTHO05D005940 1.6e-78 298.1 665 51.1
Glyma.20G230700 Glycine max HOM05D004923 ORTHO05D005940 1.9e-76 291.2 657 43.4
Medtr1g082215 Medicago truncatula HOM05D004923 ORTHO05D005940 2.4e-74 284.3 663 49.8
arahy.Tifrunner.gnm1.ann1.96LETV Arachis hypogaea HOM05D004923 ORTHO05D005940 2.5e-71 274.2 676 36.1
Psat6g148400 Pisum sativum HOM05D004923 ORTHO05D005940 5.9e-57 226.5 701 48.4
Cfa006523 Carpinus fangiana HOM05D004923 ORTHO05D005940 1.9e-55 221.5 706 30.6
Phvul.007G183300 Phaseolus vulgaris HOM05D004923 ORTHO05D005940 1.4e-53 215.3 786 31.8
Haze_04263 Corylus avellana HOM05D004923 ORTHO05D005940 1.8e-53 214.9 675 31.7
CiPaw.07G012700 Carya illinoinensis HOM05D004923 ORTHO05D005940 6.7e-53 213.0 681 34.9
Gohir.A08G212800 Gossypium hirsutum HOM05D004923 ORTHO05D005940 4.1e-50 203.8 707 34.1
arahy.Tifrunner.gnm1.ann1.VPW6I2 Arachis hypogaea HOM05D004923 ORTHO05D005940 6.9e-50 203.0 664 31.6
Actinidia19810 Actinidia chinensis HOM05D004923 ORTHO05D005940 5.1e-45 186.8 675 34.1
Gohir.D08G229800 Gossypium hirsutum HOM05D004923 ORTHO05D005940 2.2e-43 181.4 650 36.2
Gorai.004G244000 Gossypium raimondii HOM05D004923 ORTHO05D005940 2.2e-43 181.4 650 36.2
VMungo0720G2495 Vigna mungo HOM05D004923 ORTHO05D005940 1.1e-42 179.1 695 29.9
arahy.Tifrunner.gnm1.ann1.S9CKM7 Arachis hypogaea HOM05D004923 ORTHO05D005940 2.1e-38 164.9 642 28.5
CSS0000935 Camellia sinensis var. sinensis HOM05D004923 ORTHO05D005940 2.1e-38 164.9 725 31.0
CiPaw.08G168100 Carya illinoinensis HOM05D004923 ORTHO05D005940 3.0e-37 161.0 297 38.4
Prupe.6G332700 Prunus persica HOM05D004923 ORTHO05D005940 3.0e-37 161.0 708 35.6
TWI56G0946 Tripterygium wilfordii HOM05D004923 ORTHO05D005940 1.5e-36 158.7 629 27.8
QL03p002854 Quercus lobata HOM05D004923 ORTHO05D005940 4.4e-36 157.1 705 29.1
Ciclev10000602m.g Citrus clementina HOM05D004923 ORTHO05D005940 7.0e-34 149.8 663 25.0
Thecc.05G297900 Theobroma cacao HOM05D004923 ORTHO05D005940 3.5e-33 147.5 692 33.8
TPR.G2744 Trifolium pratense HOM05D004923 ORTHO05D005940 3.5e-33 147.5 461 53.6
Duzib177G0588 Durio zibethinus HOM05D004923 ORTHO05D005940 2.9e-32 144.4 692 32.8
Manes.09G161700 Manihot esculenta HOM05D004923 ORTHO05D005940 1.1e-31 142.5 695 27.5
Sopen01g053000 Solanum pennellii HOM05D004923 ORTHO05D005940 2.3e-29 134.8 732 25.1
ClCG02G016160 Citrullus lanatus HOM05D004923 ORTHO05D005940 4.4e-28 130.6 678 25.2
GSVIVG01022015001 Vitis vinifera HOM05D004923 ORTHO05D005940 4.4e-28 130.6 684 26.2
Lj5g0000463 Lotus japonicus HOM05D000160 ORTHO05D000914 2.2e-27 128.3 384 44.5
Sabra05G0039600 Salix brachista HOM05D004923 ORTHO05D005940 4.8e-27 127.1 662 25.4
Eucgr.B02029 Eucalyptus grandis HOM05D004923 ORTHO05D005940 1.4e-26 125.6 708 24.7
Hma1.2p1_0702F.1_g206060 Hydrangea macrophylla HOM05D004923 ORTHO05D005940 2.4e-26 124.8 690 23.8
QL03p003582 Quercus lobata HOM05D004923 ORTHO05D005940 3.1e-26 124.4 705 27.5
RcHm_v2.0_Chr3g0453461 Rosa chinensis HOM05D004923 ORTHO05D005940 5.3e-26 123.6 168 43.5
Solyc01g110960.4 Solanum lycopersicum HOM05D004923 ORTHO05D005940 2.0e-25 121.7 509 26.1
MELO3C004316.2 Cucumis melo HOM05D004923 ORTHO05D005940 2.7e-25 121.3 683 24.5
COL.COLO4_13559 Corchorus olitorius HOM05D004923 ORTHO05D005940 4.5e-25 120.6 195 36.4
Dinv40234 Davidia involucrata HOM05D004923 ORTHO05D005940 4.5e-25 120.6 627 24.6
SGA_v2.0_scaffold104G30165 Striga asiatica HOM05D004923 ORTHO05D005940 1.0e-24 119.4 699 24.6
Lj5g0022619 Lotus japonicus HOM05D000160 ORTHO05D000914 1.7e-24 118.6 210 44.3
FAN14G0846 Fragaria x ananassa HOM05D004923 ORTHO05D005940 2.9e-24 117.9 160 44.4
Gohir.A11G260600 Gossypium hirsutum HOM05D004923 ORTHO05D005940 5.0e-24 117.1 666 26.0
Lalb_Chr18g0045421 Lupinus albus HOM05D004923 ORTHO05D005940 5.0e-24 117.1 160 45.0
Cpa.g.sc84.119 Carica papaya HOM05D004923 ORTHO05D005940 1.5e-23 115.5 883 23.3
TAR362G1085 Trochodendron aralioides HOM05D004923 ORTHO05D005940 1.9e-23 115.2 545 26.8
Potri.013G028600 Populus trichocarpa HOM05D004923 ORTHO05D005940 2.5e-23 114.8 713 28.5
MSTRG.12109 Avicennia marina HOM05D004923 ORTHO05D005940 3.2e-23 114.4 706 24.2
Sabra13G0028900 Salix brachista HOM05D004923 ORTHO05D005940 9.4e-23 112.8 706 27.6
Atru.chr2.532 Acer truncatum HOM05D004923 ORTHO05D005940 1.6e-22 112.1 246 32.1
FAN09G1938 Fragaria x ananassa HOM05D004923 ORTHO05D005940 6.1e-22 110.2 692 36.3
MD12G1227100 Malus domestica HOM05D004923 ORTHO05D005940 8.0e-22 109.8 300 33.3
Hma1.2p1_2453F.1_g322410 Hydrangea macrophylla HOM05D004923 ORTHO05D005940 8.8e-21 106.3 640 26.1
CANSAT54G1324 Cannabis sativa HOM05D004923 ORTHO05D005940 1.2e-20 105.9 730 38.6
Sc06g0003440 Simmondsia chinensis HOM05D004923 ORTHO05D005940 9.8e-20 102.8 725 22.9
Sed0008414 Sechium edule HOM05D004923 ORTHO05D005940 3.7e-19 100.9 681 23.6
Gohir.D11G270900 Gossypium hirsutum HOM05D004923 ORTHO05D005940 6.3e-19 100.1 683 28.3
C05p62100 Brassica napus HOM05D004923 ORTHO05D005940 3.5e-17 94.4 659 26.3
BolC5t34868H Brassica oleracea HOM05D004923 ORTHO05D005940 3.5e-17 94.4 659 26.3
Potri.005G040500 Populus trichocarpa HOM05D004923 ORTHO05D005940 5.9e-17 93.6 394 25.4
FvH4_6g04961 Fragaria vesca HOM05D004923 ORTHO05D005940 1.0e-16 92.8 650 33.4
FAN05G2617 Fragaria x ananassa HOM05D004923 ORTHO05D005940 2.9e-16 91.3 650 36.8
Glyma.19G085166 Glycine max HOM05D004923 ORTHO05D005940 3.8e-16 90.9 192 38.0
Gorai.007G291400 Gossypium raimondii HOM05D004923 ORTHO05D005940 5.0e-16 90.5 683 27.4
BraA05t23008Z Brassica rapa HOM05D004923 ORTHO05D005940 1.9e-15 88.6 192 32.8
MBI18_g16961_MAGBIO Magnolia biondii HOM05D004923 ORTHO05D005940 1.9e-15 88.6 704 25.6
Lj9P678T27 Lonicera japonica HOM05D004923 ORTHO05D005940 3.3e-15 87.8 193 34.7
Lj8C55T15 Lonicera japonica HOM05D004923 ORTHO05D005940 4.2e-15 87.4 269 32.3
PGSC0003DMG400001646 Solanum tuberosum HOM05D004923 ORTHO05D005940 4.2e-15 87.4 732 26.5
FAN05G5260 Fragaria x ananassa HOM05D004923 ORTHO05D005940 5.5e-15 87.0 650 36.6
Lj5g0027016 Lotus japonicus HOM05D000160 ORTHO05D000914 5.5e-15 87.0 225 35.6
FAN02G0211 Fragaria x ananassa HOM05D004923 ORTHO05D005940 9.5e-15 86.3 693 32.6
Nitab4.5_0000003g0420 Nicotiana tabacum HOM05D004923 ORTHO05D005940 9.5e-15 86.3 130 39.2
Oeu019603.1 Olea europaea HOM05D004923 ORTHO05D005940 1.6e-14 85.5 193 32.1
Sp3g03950 Schrenkiella parvula HOM05D004923 ORTHO05D005940 2.1e-14 85.1 680 26.2
Thhalv10003823m.g Eutrema salsugineum HOM05D004923 ORTHO05D005940 3.6e-14 84.3 186 31.7
Atru.chr5.1952 Acer truncatum HOM05D000107 ORTHO05D000062 4.7e-14 84.0 219 36.5
Nitab4.5_0008768g0010 Nicotiana tabacum HOM05D004923 ORTHO05D005940 4.7e-14 84.0 137 37.2
Aqoxy2G03170 Aquilegia oxysepala HOM05D004923 ORTHO05D005940 6.1e-14 83.6 140 37.9
PSO302G0039 Papaver somniferum HOM05D004923 ORTHO05D005940 2.3e-13 81.6 136 35.3
Manes.08G124600 Manihot esculenta HOM05D004923 ORTHO05D005940 6.8e-13 80.1 393 26.5
PSO151G0007 Papaver somniferum HOM05D004923 ORTHO05D005940 4.4e-12 77.4 194 29.9
PSO151G0141 Papaver somniferum HOM05D004923 ORTHO05D005940 4.4e-12 77.4 194 29.9
PGR083G0910 Punica granatum HOM05D004923 ORTHO05D005940 4.4e-12 77.4 663 22.8
BraA06t26683Z Brassica rapa HOM05D004923 ORTHO05D005940 7.5e-12 76.6 136 33.1
AUR62000899 Chenopodium quinoa HOM05D004923 ORTHO05D005940 7.5e-12 76.6 673 22.3
AL3G15510 Arabidopsis lyrata HOM05D004923 ORTHO05D005940 1.3e-11 75.9 707 25.6
Carub.0003s0437 Capsella rubella HOM05D004923 ORTHO05D005940 1.7e-11 75.5 190 27.4
BcaNung02477 Brassica carinata HOM05D004923 ORTHO05D005940 2.2e-11 75.1 136 32.4
PSO170G6876 Papaver somniferum HOM05D004923 ORTHO05D005940 2.2e-11 75.1 499 35.3
AT3G05130 Arabidopsis thaliana HOM05D004923 ORTHO05D005940 3.7e-11 74.3 713 26.4
Oeu020434.1 Olea europaea HOM05D004923 ORTHO05D005940 4.9e-11 73.9 707 25.3
BolC7t44596H Brassica oleracea HOM05D004923 ORTHO05D005940 1.1e-10 72.8 130 32.3
HanXRQChr05g0158391 Helianthus annuus HOM05D004923 ORTHO05D005940 1.1e-10 72.8 693 25.0
Cc02_g32730 Coffea canephora HOM05D004923 ORTHO05D005940 2.4e-10 71.6 698 27.7
SalBow6G2889 Salvia bowleyana HOM05D004923 ORTHO05D005940 2.4e-10 71.6 702 21.8
AL6G39740 Arabidopsis lyrata HOM05D004923 ORTHO05D005940 4.1e-10 70.9 186 29.0
A06p37630 Brassica napus HOM05D004923 ORTHO05D005940 7.0e-10 70.1 153 29.4
ECA246G1289 Erigeron canadensis HOM05D004923 ORTHO05D005940 7.0e-10 70.1 154 32.5
CARHR079450 Cardamine hirsuta HOM05D004923 ORTHO05D005940 2.0e-09 68.6 189 27.5
CAN.G1329.24 Capsicum annuum HOM05D004923 ORTHO05D005940 2.7e-09 68.2 106 38.7
CARHR185930 Cardamine hirsuta HOM05D004923 ORTHO05D005940 1.3e-08 65.9 698 20.5
AUR62005075 Chenopodium quinoa HOM05D004923 ORTHO05D005940 1.3e-08 65.9 676 21.9
QL01p001837 Quercus lobata HOM05D004923 ORTHO05D005940 1.3e-08 65.9 100 39.0
Rhsim05G0146200 Rhododendron simsii HOM05D004923 ORTHO05D005940 2.9e-08 64.7 658 25.8
THA.LOC104818671 Tarenaya hassleriana HOM05D004923 ORTHO05D005940 2.9e-08 64.7 703 22.2
C07p40590 Brassica napus HOM05D004923 ORTHO05D005940 2.5e-07 61.6 708 21.5
AT5G27330 Arabidopsis thaliana HOM05D004923 ORTHO05D005940 5.6e-07 60.5 700 21.1
Carub.0006s2521 Capsella rubella HOM05D004923 ORTHO05D005940 7.3e-07 60.1 701 23.3
COL.COLO4_23513 Corchorus olitorius HOM05D004923 ORTHO05D005940 9.5e-07 59.7 110 37.3
PSO151G0084 Papaver somniferum HOM05D004923 ORTHO05D005940 1.2e-06 59.3 192 29.7
Nn4g26097 Nelumbo nucifera HOM05D004923 ORTHO05D005940 3.6e-06 57.8 724 24.3
CsaV3_2G004820 Cucumis sativus L. HOM05D004923 ORTHO05D005940 4.7e-06 57.4 681 21.1


User provided reference genes

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