Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0013478 Lotus japonicus HOM05D004666 ORTHO05D005822 0.0e+00 2052.3 1063 100.0
Lj5g0018797 Lotus japonicus HOM05D004666 ORTHO05D005822 0.0e+00 1261.5 1081 63.3
Ca_26672_v3 Cicer arietinum L. HOM05D004666 ORTHO05D005822 0.0e+00 1202.2 1043 60.8
Ca_30723_v3 Cicer arietinum L. HOM05D004666 ORTHO05D005822 0.0e+00 1202.2 1043 60.8
TPR.G35431 Trifolium pratense HOM05D004666 ORTHO05D005822 0.0e+00 1171.4 1035 60.8
Glyma.10G068100 Glycine max HOM05D004666 ORTHO05D005822 0.0e+00 1151.0 1148 57.3
Lalb_Chr02g0155381 Lupinus albus HOM05D004666 ORTHO05D005822 0.0e+00 1147.5 1050 58.4
VMungo0720G2175 Vigna mungo HOM05D004666 ORTHO05D005822 0.0e+00 1124.8 1145 55.5
Medtr1g060580 Medicago truncatula HOM05D004666 ORTHO05D005822 0.0e+00 1097.0 1042 57.3
Phvul.011G176600 Phaseolus vulgaris HOM05D004666 ORTHO05D005822 0.0e+00 1095.1 1152 54.5
Phvul.007G229800 Phaseolus vulgaris HOM05D004666 ORTHO05D005822 0.0e+00 1091.6 1095 56.4
Psat6g082920 Pisum sativum HOM05D004666 ORTHO05D005822 2.6e-304 1048.9 1018 56.4
arahy.Tifrunner.gnm1.ann1.WFL2XE Arachis hypogaea HOM05D004666 ORTHO05D005822 8.8e-284 980.7 1027 52.3
arahy.Tifrunner.gnm1.ann1.G8H5C8 Arachis hypogaea HOM05D004666 ORTHO05D005822 5.4e-281 971.5 1074 50.7
arahy.Tifrunner.gnm1.ann1.T4KAXF Arachis hypogaea HOM05D004666 ORTHO05D005822 1.1e-278 963.8 1056 50.8
arahy.Tifrunner.gnm1.ann1.LSN657 Arachis hypogaea HOM05D004666 ORTHO05D005822 1.1e-260 904.0 1094 47.7
Dinv21227 Davidia involucrata HOM05D004666 ORTHO05D005822 2.6e-219 766.5 1009 43.6
Cfa002067 Carpinus fangiana HOM05D004666 ORTHO05D005822 3.0e-215 753.1 1061 43.4
CiPaw.09G011000 Carya illinoinensis HOM05D004666 ORTHO05D005822 1.5e-214 750.7 1028 43.7
COL.COLO4_15658 Corchorus olitorius HOM05D004666 ORTHO05D005822 4.3e-214 749.2 1069 43.5
QL07p039593 Quercus lobata HOM05D004666 ORTHO05D005822 6.5e-210 735.3 1018 44.0
Rhsim05G0022800 Rhododendron simsii HOM05D004666 ORTHO05D005822 1.6e-205 720.7 1024 42.4
Potri.008G200900 Populus trichocarpa HOM05D004666 ORTHO05D005822 3.2e-201 706.4 1051 41.9
Manes.13G012000 Manihot esculenta HOM05D004666 ORTHO05D005822 1.2e-200 704.5 1029 42.0
Gorai.001G233200 Gossypium raimondii HOM05D004666 ORTHO05D005822 3.9e-199 699.5 1054 39.4
Gohir.A07G200500 Gossypium hirsutum HOM05D004666 ORTHO05D005822 1.7e-197 694.1 1061 39.3
RcHm_v2.0_Chr4g0409331 Rosa chinensis HOM05D004666 ORTHO05D005822 1.0e-194 684.9 1123 39.4
Thecc.01G223300 Theobroma cacao HOM05D004666 ORTHO05D005822 2.9e-194 683.3 1019 40.9
Gohir.D07G206800 Gossypium hirsutum HOM05D004666 ORTHO05D005822 1.1e-193 681.4 1053 39.7
TWI34G1071 Tripterygium wilfordii HOM05D004666 ORTHO05D005822 9.4e-193 678.3 1034 40.8
Lj2C133G10 Lonicera japonica HOM05D004666 ORTHO05D005822 7.4e-190 668.7 1078 41.3
TAR365G1212 Trochodendron aralioides HOM05D004666 ORTHO05D005822 1.3e-189 667.9 1017 41.1
GSVIVG01032069001 Vitis vinifera HOM05D004666 ORTHO05D005822 5.3e-188 662.5 1020 40.4
FvH4_6g18260 Fragaria vesca HOM05D004666 ORTHO05D005822 7.0e-188 662.1 1088 37.9
CANSAT54G2995 Cannabis sativa HOM05D004666 ORTHO05D005822 3.5e-187 659.8 1014 39.2
Prupe.7G114200 Prunus persica HOM05D004666 ORTHO05D005822 7.7e-187 658.7 1144 38.3
MELO3C009457.2 Cucumis melo HOM05D004666 ORTHO05D005822 2.9e-186 656.8 1033 39.1
MD09G1081300 Malus domestica HOM05D004666 ORTHO05D005822 3.2e-185 653.3 1063 40.0
Cc06_g05530 Coffea canephora HOM05D004666 ORTHO05D005822 5.5e-185 652.5 1012 40.5
Sed0022470 Sechium edule HOM05D004666 ORTHO05D005822 3.0e-183 646.7 1028 39.0
EL10Ac7g16949 Beta vulgaris HOM05D004666 ORTHO05D005822 1.2e-182 644.8 1034 37.8
CsaV3_3G037120 Cucumis sativus L. HOM05D004666 ORTHO05D005822 5.3e-180 636.0 1031 37.5
PSO384G1605 Papaver somniferum HOM05D004666 ORTHO05D005822 2.7e-179 633.6 1056 39.4
Hund26220 Selenicereus undatus HOM05D004666 ORTHO05D005822 3.5e-179 633.3 1131 36.3
BolC8t49572H Brassica oleracea HOM05D004666 ORTHO05D005822 7.2e-177 625.5 1013 38.2
DCAR_013376 Daucus carota HOM05D004666 ORTHO05D005822 9.4e-177 625.2 1026 41.0
PSO425G0050 Papaver somniferum HOM05D004666 ORTHO05D005822 1.6e-176 624.4 1065 39.2
Thhalv10006802m.g Eutrema salsugineum HOM05D004666 ORTHO05D005822 2.7e-176 623.6 1017 37.3
FvH4_7g02500 Fragaria vesca HOM05D004666 ORTHO05D005822 3.6e-176 623.2 1108 36.6
MD12G1022600 Malus domestica HOM05D004666 ORTHO05D005822 1.0e-175 621.7 1060 38.8
ClCG10G019140 Citrullus lanatus HOM05D004666 ORTHO05D005822 5.2e-175 619.4 1026 38.7
Aqoxy3G00997 Aquilegia oxysepala HOM05D004666 ORTHO05D005822 2.0e-174 617.5 1039 37.4
A08p29790 Brassica napus HOM05D004666 ORTHO05D005822 4.4e-174 616.3 1027 39.4
THA.LOC104827512 Tarenaya hassleriana HOM05D004666 ORTHO05D005822 4.4e-174 616.3 1012 38.3
Ah.08g210700 Amaranthus hybridus HOM05D004666 ORTHO05D005822 5.7e-174 615.9 1060 36.3
BcaB03g12912 Brassica carinata HOM05D004666 ORTHO05D005822 1.3e-173 614.8 1016 36.8
Sp1g17360 Schrenkiella parvula HOM05D004666 ORTHO05D005822 1.7e-173 614.4 1000 37.3
C08p19490 Brassica napus HOM05D004666 ORTHO05D005822 4.8e-173 612.8 1008 37.7
BraA08t34913Z Brassica rapa HOM05D004666 ORTHO05D005822 4.8e-173 612.8 1025 39.1
Carub.0001s1905 Capsella rubella HOM05D004666 ORTHO05D005822 4.8e-173 612.8 1002 37.9
AT1G19485 Arabidopsis thaliana HOM05D004666 ORTHO05D005822 6.3e-173 612.5 1002 37.3
Atru.chr8.1588 Acer truncatum HOM05D004666 ORTHO05D005822 3.1e-172 610.1 908 41.9
C05p17890 Brassica napus HOM05D004666 ORTHO05D005822 4.1e-172 609.8 1017 37.5
vmacro17219 Vaccinium macrocarpon HOM05D004666 ORTHO05D005822 7.0e-172 609.0 1066 38.3
A06p15660 Brassica napus HOM05D004666 ORTHO05D005822 9.1e-172 608.6 1020 37.8
BraA06t24675Z Brassica rapa HOM05D004666 ORTHO05D005822 9.1e-172 608.6 1020 37.8
BolC5t30496H Brassica oleracea HOM05D004666 ORTHO05D005822 3.5e-171 606.7 1018 37.5
Nitab4.5_0000794g0050 Nicotiana tabacum HOM05D004666 ORTHO05D005822 2.2e-170 604.0 1024 38.6
ECA248G3102 Erigeron canadensis HOM05D004666 ORTHO05D005822 3.2e-169 600.1 1082 39.1
CARHR020050 Cardamine hirsuta HOM05D004666 ORTHO05D005822 7.2e-169 599.0 1000 37.5
vmacro22687 Vaccinium macrocarpon HOM05D004666 ORTHO05D005822 1.4e-167 594.7 1044 38.5
Ciclev10011197m.g Citrus clementina HOM05D004666 ORTHO05D005822 3.0e-167 593.6 844 41.8
PGR142G0825 Punica granatum HOM05D004666 ORTHO05D005822 6.8e-167 592.4 1003 37.7
Aa31LG7G4140 Aethionema arabicum HOM05D004666 ORTHO05D005822 2.6e-166 590.5 1018 36.8
Oeu040521.1 Olea europaea HOM05D004666 ORTHO05D005822 4.9e-165 586.3 1007 36.5
Solyc09g009710.4 Solanum lycopersicum HOM05D004666 ORTHO05D005822 1.1e-164 585.1 1026 38.9
Sopen09g004490 Solanum pennellii HOM05D004666 ORTHO05D005822 2.4e-164 583.9 1020 38.8
Sed0014063 Sechium edule HOM05D004666 ORTHO05D005822 4.5e-163 579.7 1035 39.8
FAN06G2408 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.0e-162 578.6 1075 36.7
HanXRQChr01g0029141 Helianthus annuus HOM05D004666 ORTHO05D005822 1.9e-161 574.3 1006 38.8
TWI73G1120 Tripterygium wilfordii HOM05D004666 ORTHO05D005822 1.6e-160 571.2 1019 37.6
FAN03G3209 Fragaria x ananassa HOM05D004666 ORTHO05D005822 3.6e-160 570.1 1108 35.5
ECA248G2596 Erigeron canadensis HOM05D004666 ORTHO05D005822 2.3e-159 567.4 1079 37.0
Haze_19573 Corylus avellana HOM05D004666 ORTHO05D005822 2.6e-158 563.9 751 45.3
AUR62033523 Chenopodium quinoa HOM05D004666 ORTHO05D005822 3.4e-158 563.5 1059 35.9
Lsat_1_v5_gn_1_48480 Lactuca sativa HOM05D004666 ORTHO05D005822 2.2e-157 560.8 1021 36.0
Nitab4.5_0009916g0020 Nicotiana tabacum HOM05D004666 ORTHO05D005822 2.2e-157 560.8 1022 37.7
HPP92_015079 Vanilla planifolia HOM05D004666 ORTHO05D005822 1.6e-152 544.7 1207 33.0
Peaxi162Scf00015g00639 Petunia axillaris HOM05D004666 ORTHO05D005822 1.7e-149 534.6 1017 37.9
AL1G32230 Arabidopsis lyrata HOM05D004666 ORTHO05D005822 3.7e-149 533.5 897 38.6
RcHm_v2.0_Chr3g0472691 Rosa chinensis HOM05D004666 ORTHO05D005822 1.6e-147 528.1 545 49.5
Sc02g0001000 Simmondsia chinensis HOM05D004666 ORTHO05D005822 3.3e-145 520.4 1008 37.6
SGA_v2.0_scaffold147G36363 Striga asiatica HOM05D004666 ORTHO05D005822 7.3e-145 519.2 1000 34.8
FAN02G3237 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.8e-143 514.6 835 37.8
Migut.J00966 Erythranthe guttata HOM05D004666 ORTHO05D005822 1.1e-140 505.4 1010 34.6
MBI17_g35786_MAGBIO Magnolia biondii HOM05D004666 ORTHO05D005822 3.9e-138 496.9 1012 34.7
SalBow3G3865 Salvia bowleyana HOM05D004666 ORTHO05D005822 5.8e-134 483.0 1030 33.4
Nn2g14084 Nelumbo nucifera HOM05D004666 ORTHO05D005822 3.6e-128 463.8 768 37.9
Duzib114G0569 Durio zibethinus HOM05D004666 ORTHO05D005822 8.1e-128 462.6 1025 33.4
Potri.006G036601 Populus trichocarpa HOM05D004666 ORTHO05D005822 2.4e-127 461.1 650 43.7
Sabra08G0160300 Salix brachista HOM05D004666 ORTHO05D005822 3.9e-122 443.7 744 38.6
Peaxi162Scf00036g00125 Petunia axillaris HOM05D004666 ORTHO05D005822 1.3e-120 438.7 1022 34.1
FAN05G5602 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.5e-118 431.8 858 35.3
Sabra12G0045300 Salix brachista HOM05D004666 ORTHO05D005822 1.1e-116 425.6 782 36.8
AUR62028568 Chenopodium quinoa HOM05D004666 ORTHO05D005822 8.7e-114 416.0 739 36.5
unitig_749.g14294 Utricularia gibba HOM05D004666 ORTHO05D005822 4.9e-109 400.2 1008 31.2
CDE08G1659 Ceratophyllum demersum HOM05D004666 ORTHO05D005822 3.1e-103 380.9 1007 29.0
Zm00001eb147330 Zea mays HOM05D004666 ORTHO05D005822 4.0e-103 380.6 507 40.2
Eucgr.K02035 Eucalyptus grandis HOM05D004666 ORTHO05D005822 1.2e-99 369.0 282 60.6
Os01g0858000 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 9.0e-95 352.8 337 51.3
Pp3c1_31470 Physcomitrium patens HOM05D004666 ORTHO05D005822 1.7e-80 305.4 489 35.6
Cpa.g.sc5.49 Carica papaya HOM05D004666 ORTHO05D005822 1.8e-79 302.0 324 47.8
Mapoly0021s0027 Marchantia polymorpha HOM05D004666 ORTHO05D005822 1.6e-75 288.9 480 34.4
PGSC0003DMG400008959 Solanum tuberosum HOM05D004666 ORTHO05D005822 1.6e-70 272.3 643 33.6
AagrBONN_evm.TU.Sc2ySwM_344.3422 Anthoceros agrestis HOM05D004666 ORTHO05D005822 2.2e-69 268.5 492 34.1
Hma1.2p1_2087F.1_g313760 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 3.3e-65 254.6 294 47.6
FAN05G4874 Fragaria x ananassa HOM05D004666 ORTHO05D005822 4.8e-56 224.2 1031 24.8
RcHm_v2.0_Chr3g0472701 Rosa chinensis HOM05D004666 ORTHO05D005822 1.2e-51 209.5 197 53.3
Haze_16425 Corylus avellana HOM05D004666 ORTHO05D005822 1.6e-51 209.1 306 44.4
RhsimUnG0189100 Rhododendron simsii HOM05D004666 ORTHO05D005822 1.1e-47 196.4 217 48.4
Cpa.g.c36918 Carica papaya HOM05D004666 ORTHO05D005822 1.3e-45 189.5 197 49.7
FAN09G1276 Fragaria x ananassa HOM05D004666 ORTHO05D005822 2.9e-45 188.3 189 49.2
Rhsim09G0020300 Rhododendron simsii HOM05D004666 ORTHO05D005822 8.0e-43 180.3 662 28.7
Hma1.2p1_0084F.1_g043480 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 2.2e-40 172.2 208 44.7
CBR_g38478 Chara braunii HOM05D004666 ORTHO05D005822 1.1e-39 169.9 262 37.0
ATR0820G266 Amborella trichopoda HOM05D004666 ORTHO05D005822 1.8e-39 169.1 299 36.1
QL03p004438 Quercus lobata HOM05D004666 ORTHO05D005822 1.6e-38 166.0 248 39.9
FAN14G5421 Fragaria x ananassa HOM05D004666 ORTHO05D005822 3.6e-35 154.8 255 38.4
CDE08G0899 Ceratophyllum demersum HOM05D007279 ORTHO05D009212 8.0e-35 153.7 189 40.7
SEGI_09998 Sequoiadendron giganteum HOM05D004666 ORTHO05D005822 2.6e-33 148.7 165 47.9
SHI23868 Sapria himalayana HOM05D004666 ORTHO05D005822 1.0e-29 136.7 212 42.0
Eucgr.L02043 Eucalyptus grandis HOM05D004666 ORTHO05D005822 2.8e-27 128.6 213 39.0
ATR0820G291 Amborella trichopoda HOM05D004666 ORTHO05D005822 6.2e-27 127.5 156 41.7
FAN10G4251 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.8e-26 125.9 569 25.7
QL03p004414 Quercus lobata HOM05D004666 ORTHO05D005822 8.9e-26 123.6 149 47.0
arahy.Tifrunner.gnm1.ann1.AE8L4W Arachis hypogaea HOM05D004666 ORTHO05D005822 3.4e-25 121.7 114 51.8
Hma1.2p1_0084F.1_g043500 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 6.4e-24 117.5 461 26.9
CSS0049785 Camellia sinensis var. sinensis HOM05D004666 ORTHO05D005822 2.7e-22 112.1 119 49.6
Hma1.2p1_2087F.1_g313780 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 3.0e-21 108.6 214 33.6
SEGI_32780 Sequoiadendron giganteum HOM05D004666 ORTHO05D005822 1.9e-20 105.9 214 34.1
CDE08G0815 Ceratophyllum demersum HOM05D004666 ORTHO05D005822 2.4e-18 99.0 181 34.3
Sabra06G0024800 Salix brachista HOM05D004666 ORTHO05D005822 8.9e-18 97.1 201 33.8
Os02g0307300 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 3.5e-14 85.1 187 30.5
Hma1.2p1_0084F.1_g043490 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 7.8e-14 84.0 113 42.5
QL04p079053 Quercus lobata HOM05D004666 ORTHO05D005822 7.8e-14 84.0 132 34.8
VMungo0464G1806 Vigna mungo HOM05D009237 ORTHO05D010310 3.0e-13 82.0 50 70.0
Haze_16424 Corylus avellana HOM05D004666 ORTHO05D005822 2.8e-11 75.5 155 35.5
RcHm_v2.0_Chr7g0223981 Rosa chinensis HOM05D004666 ORTHO05D005822 1.9e-07 62.8 51 51.0
Sabra16G0037300 Salix brachista HOM05D004666 ORTHO05D017783 3.2e-07 62.0 68 45.6
Os07g0454400 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 9.3e-07 60.5 95 34.7


User provided reference genes

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