Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0013377 Lotus japonicus HOM05D006471 ORTHO05D008157 5.1e-218 760.8 375 100.0
Glyma.10G286400 Glycine max HOM05D006471 ORTHO05D008157 4.7e-163 578.2 382 78.5
Phvul.007G014500 Phaseolus vulgaris HOM05D006471 ORTHO05D008157 3.9e-162 575.1 381 78.7
Psat6g234000 Pisum sativum HOM05D006471 ORTHO05D008157 3.9e-162 575.1 376 77.4
TPR.G4059 Trifolium pratense HOM05D006471 ORTHO05D008157 1.1e-159 567.0 373 77.2
VMungo0720G2382 Vigna mungo HOM05D006471 ORTHO05D008157 4.5e-158 561.6 381 77.4
Medtr1g114560 Medicago truncatula HOM05D006471 ORTHO05D008157 2.0e-153 546.2 373 75.6
Lalb_Chr06g0163931 Lupinus albus HOM05D006471 ORTHO05D008157 4.2e-148 528.5 355 76.3
arahy.Tifrunner.gnm1.ann1.EW69V8 Arachis hypogaea HOM05D006471 ORTHO05D008157 1.8e-143 513.1 365 74.2
Ca_11258_v3 Cicer arietinum L. HOM05D000200 ORTHO05D001546 1.3e-141 506.9 291 85.9
arahy.Tifrunner.gnm1.ann1.V4ETXF Arachis hypogaea HOM05D006471 ORTHO05D008157 1.2e-129 467.2 490 57.3
CiPaw.05G172000 Carya illinoinensis HOM05D006471 ORTHO05D008157 1.1e-127 460.7 381 62.7
Haze_11788 Corylus avellana HOM05D006471 ORTHO05D008157 3.2e-127 459.1 376 64.6
Cfa008776 Carpinus fangiana HOM05D006471 ORTHO05D008157 2.3e-125 453.0 376 64.1
CANSAT78G1799 Cannabis sativa HOM05D006471 ORTHO05D008157 5.4e-119 431.8 375 61.9
RcHm_v2.0_Chr4g0446941 Rosa chinensis HOM05D006471 ORTHO05D008157 7.1e-119 431.4 379 61.2
Manes.04G162800 Manihot esculenta HOM05D006471 ORTHO05D008157 2.7e-118 429.5 385 59.2
Cfa014781 Carpinus fangiana HOM05D006857 ORTHO05D008679 1.7e-117 426.8 360 64.2
FvH4_4g37140 Fragaria vesca HOM05D006471 ORTHO05D008157 8.6e-117 424.5 377 61.3
Eucgr.G02586 Eucalyptus grandis HOM05D006471 ORTHO05D008157 1.4e-114 417.2 310 67.4
CSS0032634 Camellia sinensis var. sinensis HOM05D006471 ORTHO05D008157 3.1e-114 416.0 379 59.6
Dinv17647 Davidia involucrata HOM05D000200 ORTHO05D001546 3.1e-114 416.0 319 65.8
CSS0035224 Camellia sinensis var. sinensis HOM05D006471 ORTHO05D008157 8.9e-114 414.5 379 59.4
Hma1.2p1_0044F.1_g026290 Hydrangea macrophylla HOM05D006471 ORTHO05D008157 8.9e-114 414.5 389 58.1
TAR628G0373 Trochodendron aralioides HOM05D006471 ORTHO05D008157 8.9e-114 414.5 372 61.0
Atru.chr11.1240 Acer truncatum HOM05D006471 ORTHO05D008157 1.5e-113 413.7 383 58.2
Ciclev10031833m.g Citrus clementina HOM05D006471 ORTHO05D008157 2.0e-113 413.3 384 59.1
CsaV3_5G029010 Cucumis sativus L. HOM05D006471 ORTHO05D008157 2.2e-112 409.8 376 60.1
MD16G1004200 Malus domestica HOM05D006471 ORTHO05D008157 1.6e-110 403.7 312 68.9
Actinidia04343 Actinidia chinensis HOM05D006471 ORTHO05D008157 2.7e-110 402.9 319 64.6
Thecc.02G154800 Theobroma cacao HOM05D006471 ORTHO05D008157 2.7e-110 402.9 374 58.8
TWI77G0721 Tripterygium wilfordii HOM05D006471 ORTHO05D008157 3.5e-110 402.5 385 59.0
ClCG02G014150 Citrullus lanatus HOM05D006471 ORTHO05D008157 1.0e-109 401.0 423 53.9
Potri.007G075500 Populus trichocarpa HOM05D006471 ORTHO05D008157 1.1e-108 397.5 322 65.5
TWI74G1585 Tripterygium wilfordii HOM05D006471 ORTHO05D008157 1.2e-107 394.0 395 55.7
Cpa.g.sc60.91 Carica papaya HOM05D006471 ORTHO05D008157 3.6e-107 392.5 367 58.9
Gorai.012G135400 Gossypium raimondii HOM05D006471 ORTHO05D008157 6.2e-107 391.7 376 57.2
Sed0003381 Sechium edule HOM05D006471 ORTHO05D008157 2.4e-106 389.8 375 57.9
Gohir.D04G148900 Gossypium hirsutum HOM05D006471 ORTHO05D008157 5.2e-106 388.7 376 56.6
PGR142G1667 Punica granatum HOM05D006471 ORTHO05D008157 6.8e-106 388.3 382 55.8
Gohir.A04G109424 Gossypium hirsutum HOM05D006471 ORTHO05D008157 8.9e-106 387.9 379 56.2
MBI06_g44273_MAGBIO Magnolia biondii HOM05D006471 ORTHO05D008157 1.5e-105 387.1 372 56.2
COL.COLO4_33107 Corchorus olitorius HOM05D006471 ORTHO05D008157 2.6e-105 386.3 310 63.5
Carub.0006s0724 Capsella rubella HOM05D006471 ORTHO05D008157 4.4e-105 385.6 310 63.2
GSVIVG01034416001 Vitis vinifera HOM05D006471 ORTHO05D008157 4.4e-105 385.6 287 68.6
CARHR204730 Cardamine hirsuta HOM05D006471 ORTHO05D008157 5.8e-105 385.2 302 62.3
Aa31LG3G18230 Aethionema arabicum HOM05D006471 ORTHO05D005636 1.7e-104 383.6 302 62.9
Duzib132G0448 Durio zibethinus HOM05D006471 ORTHO05D008157 1.7e-104 383.6 310 62.9
Sabra07G0063800 Salix brachista HOM05D006471 ORTHO05D008157 3.8e-104 382.5 295 67.1
AL6G18780 Arabidopsis lyrata HOM05D006471 ORTHO05D008157 1.4e-103 380.6 303 62.4
AT5G23330 Arabidopsis thaliana HOM05D006471 ORTHO05D008157 1.2e-102 377.5 312 61.2
Sopen04g004170 Solanum pennellii HOM05D006471 ORTHO05D008157 1.2e-102 377.5 304 62.8
Duzib248G0471 Durio zibethinus HOM05D000200 ORTHO05D001546 2.1e-102 376.7 292 65.1
Nn2g12513 Nelumbo nucifera HOM05D006471 ORTHO05D008157 2.1e-102 376.7 296 63.5
Solyc04g008990.3 Solanum lycopersicum HOM05D006471 ORTHO05D008157 2.1e-102 376.7 304 62.8
CAN.G274.15 Capsicum annuum HOM05D006471 ORTHO05D008157 2.7e-102 376.3 379 54.6
AUR62032950 Chenopodium quinoa HOM05D006471 ORTHO05D008157 2.7e-102 376.3 292 64.7
PGSC0003DMG400011512 Solanum tuberosum HOM05D006471 ORTHO05D008157 7.8e-102 374.8 304 63.2
EL10Ac9g22981 Beta vulgaris HOM05D006471 ORTHO05D008157 1.0e-101 374.4 307 63.5
Thhalv10013886m.g Eutrema salsugineum HOM05D006471 ORTHO05D008157 1.0e-101 374.4 302 61.3
THA.LOC104818378 Tarenaya hassleriana HOM05D006471 ORTHO05D008157 5.1e-101 372.1 309 62.8
AT5G08340 Arabidopsis thaliana HOM05D006471 ORTHO05D008157 6.6e-101 371.7 311 61.1
AUR62017731 Chenopodium quinoa HOM05D006471 ORTHO05D008157 6.6e-101 371.7 303 62.0
Nitab4.5_0005997g0050 Nicotiana tabacum HOM05D006471 ORTHO05D008157 8.7e-101 371.3 298 65.1
PSO782G0560 Papaver somniferum HOM05D006471 ORTHO05D008157 8.7e-101 371.3 375 54.4
BcaB01g05611 Brassica carinata HOM05D006471 ORTHO05D008157 1.9e-100 370.2 302 61.3
BraA03t09725Z Brassica rapa HOM05D006471 ORTHO05D008157 2.5e-100 369.8 377 54.1
Nitab4.5_0004979g0070 Nicotiana tabacum HOM05D006471 ORTHO05D008157 2.5e-100 369.8 281 66.9
A03p03780 Brassica napus HOM05D006471 ORTHO05D008157 5.6e-100 368.6 377 54.1
MSTRG.8091 Avicennia marina HOM05D006471 ORTHO05D008157 7.3e-100 368.2 296 64.5
PSO170G1614 Papaver somniferum HOM05D006471 ORTHO05D008157 7.3e-100 368.2 374 53.2
Peaxi162Scf00681g00221 Petunia axillaris HOM05D006471 ORTHO05D008157 7.3e-100 368.2 311 60.8
Sp6g34600 Schrenkiella parvula HOM05D006471 ORTHO05D008157 9.6e-100 367.9 302 59.9
MSTRG.428 Avicennia marina HOM05D006471 ORTHO05D008157 2.1e-99 366.7 298 62.1
HanXRQChr03g0076951 Helianthus annuus HOM05D006471 ORTHO05D008157 2.1e-99 366.7 289 64.7
Migut.L00869 Erythranthe guttata HOM05D006471 ORTHO05D008157 4.8e-99 365.5 304 63.8
Ah.16g106450 Amaranthus hybridus HOM05D000154 ORTHO05D000092 6.2e-99 365.2 304 62.5
C03p04260 Brassica napus HOM05D006471 ORTHO05D008157 6.2e-99 365.2 377 53.3
BolC3t12958H Brassica oleracea HOM05D006471 ORTHO05D008157 6.2e-99 365.2 377 53.3
MELO3C011756.2 Cucumis melo HOM05D006471 ORTHO05D008157 1.4e-98 364.0 488 46.9
BcaB01g05607 Brassica carinata HOM05D006471 ORTHO05D008157 1.8e-98 363.6 302 60.6
Glyma.20G102800 Glycine max HOM05D006471 ORTHO05D008157 1.8e-98 363.6 334 61.4
DCAR_002605 Daucus carota HOM05D000200 ORTHO05D001546 4.0e-98 362.5 301 60.5
AL6G34590 Arabidopsis lyrata HOM05D006471 ORTHO05D008157 6.9e-98 361.7 309 60.5
Lj3A846G60 Lonicera japonica HOM05D006471 ORTHO05D008157 9.0e-98 361.3 276 65.6
Aqoxy2G00030 Aquilegia oxysepala HOM05D006471 ORTHO05D008157 4.4e-97 359.0 290 63.4
Rhsim12G0193800 Rhododendron simsii HOM05D006471 ORTHO05D008157 5.8e-97 358.6 295 63.1
Sc10g0006980 Simmondsia chinensis HOM05D006471 ORTHO05D008157 5.8e-97 358.6 290 64.1
THA.LOC104800739 Tarenaya hassleriana HOM05D006471 ORTHO05D008157 5.8e-97 358.6 312 60.9
Aqoxy2G01235 Aquilegia oxysepala HOM05D006471 ORTHO05D008157 1.3e-96 357.5 292 63.0
vmacro16923 Vaccinium macrocarpon HOM05D006471 ORTHO05D008157 3.8e-96 355.9 300 62.0
SalBow2G1748 Salvia bowleyana HOM05D006471 ORTHO05D008157 1.4e-95 354.0 299 60.5
Nn8g40194 Nelumbo nucifera HOM05D006471 ORTHO05D008157 1.9e-95 353.6 272 64.7
FAN17G0671 Fragaria x ananassa HOM05D006471 ORTHO05D008157 1.2e-94 350.9 260 68.8
Lsat_1_v5_gn_0_15460 Lactuca sativa HOM05D006471 ORTHO05D008157 2.1e-94 350.1 292 63.7
SGA_v2.0_scaffold92G28263 Striga asiatica HOM05D006471 ORTHO05D008157 1.0e-93 347.8 304 60.9
CARHR190210 Cardamine hirsuta HOM05D006471 ORTHO05D008157 2.1e-91 340.1 291 61.5
QL08p056974 Quercus lobata HOM05D006471 ORTHO05D008157 2.1e-91 340.1 230 73.0
Prupe.1G349200 Prunus persica HOM05D006471 ORTHO05D008157 4.8e-91 339.0 242 70.7
CDE02G4670 Ceratophyllum demersum HOM05D006471 ORTHO05D008157 1.4e-90 337.4 322 56.2
FAN07G1501 Fragaria x ananassa HOM05D002605 ORTHO05D002842 4.0e-90 335.9 239 70.7
SGA_v2.0_scaffold580G53041 Striga asiatica HOM05D006471 ORTHO05D004488 6.9e-90 335.1 339 55.5
unitig_749.g13340 Utricularia gibba HOM05D006471 ORTHO05D008157 2.0e-89 333.6 268 61.2
ECA240G3241 Erigeron canadensis HOM05D006471 ORTHO05D008157 4.9e-88 328.9 247 66.8
Os03g0801700 Oryza sativa ssp. japonica HOM05D006471 ORTHO05D008157 8.4e-88 328.2 296 58.1
Oeu006329.1 Olea europaea HOM05D006471 ORTHO05D008157 5.4e-87 325.5 297 57.6
Zm00001eb061200 Zea mays HOM05D006471 ORTHO05D008157 1.2e-86 324.3 296 58.4
ATR0665G473 Amborella trichopoda HOM05D006471 ORTHO05D008157 2.1e-86 323.6 276 62.0
HPP92_017784 Vanilla planifolia HOM05D006471 ORTHO05D008157 2.5e-84 316.6 298 57.0
SGA_v2.0_scaffold42G16129 Striga asiatica HOM05D006471 ORTHO05D008157 1.1e-82 311.2 312 55.1
Cc00_g09970 Coffea canephora HOM05D006471 ORTHO05D008157 1.2e-81 307.8 239 68.2
SGA_v2.0_scaffold1G00551 Striga asiatica HOM05D006471 ORTHO05D008157 3.2e-79 299.7 241 64.3
MD13G1003200 Malus domestica HOM05D006471 ORTHO05D008157 1.6e-70 270.8 218 63.8
SEGI_40912 Sequoiadendron giganteum HOM05D006471 ORTHO05D008157 2.1e-70 270.4 255 56.5
Pp3c5_28930 Physcomitrium patens HOM05D006471 ORTHO05D008157 2.7e-70 270.0 284 49.6
Carub.0006s2111 Capsella rubella HOM05D006471 ORTHO05D008157 3.0e-69 266.5 231 58.9
Mapoly0019s0104 Marchantia polymorpha HOM05D006471 ORTHO05D008157 2.1e-62 243.8 231 54.5
Pp3c14_5150 Physcomitrium patens HOM05D006471 ORTHO05D008157 2.3e-61 240.4 273 46.5
SMO141G0020 Selaginella moellendorffii HOM05D006471 ORTHO05D008157 8.8e-61 238.4 191 59.7
FAN12G2193 Fragaria x ananassa HOM05D006471 ORTHO05D008157 4.0e-45 186.4 137 70.1
AagrBONN_evm.TU.Sc2ySwM_362.1554 Anthoceros agrestis HOM05D006471 ORTHO05D008157 2.8e-43 180.3 225 43.6
MCO07G267 Micromonas commoda HOM05D006471 ORTHO05D008157 2.5e-39 167.2 219 44.3
Sc06g0004050 Simmondsia chinensis HOM05D006471 ORTHO05D008157 5.9e-33 146.0 171 53.2
Cre13.g607600 Chlamydomonas reinhardtii HOM05D006471 ORTHO05D008157 7.7e-25 119.0 337 30.0
Carub.0006s2110 Capsella rubella HOM05D006471 ORTHO05D008157 4.7e-22 109.8 94 59.6
QL08p056966 Quercus lobata HOM05D006471 ORTHO05D008157 3.4e-20 103.6 68 73.5
arahy.Tifrunner.gnm1.ann1.SQAN1F Arachis hypogaea HOM05D006471 ORTHO05D008157 5.8e-12 76.3 47 76.6
BolC9t53696H Brassica oleracea HOM05D006471 ORTHO05D008157 8.3e-11 72.4 83 45.8


User provided reference genes

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