Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0013341 Lotus japonicus HOM05D008490 ORTHO05D010725 3.9e-110 401.4 187 100.0
LjContig00439g0024223 Lotus japonicus HOM05D008490 ORTHO05D010725 3.9e-110 401.4 187 100.0
arahy.Tifrunner.gnm1.ann1.PAX1AS Arachis hypogaea HOM05D008490 ORTHO05D010725 4.5e-106 387.9 189 97.4
arahy.Tifrunner.gnm1.ann1.BZJ16Q Arachis hypogaea HOM05D008490 ORTHO05D010725 1.4e-104 382.9 186 97.3
Lj5g0002635 Lotus japonicus HOM05D008490 ORTHO05D010725 3.9e-102 374.8 187 94.1
Psat4g185480 Pisum sativum HOM05D008490 ORTHO05D010725 3.2e-72 275.4 132 97.7
VMungo0329G0002 Vigna mungo HOM05D008490 ORTHO05D010725 1.2e-71 273.5 132 97.7
TPR.G7850 Trifolium pratense HOM05D008490 ORTHO05D010725 1.6e-71 273.1 132 97.0
Sed0016837 Sechium edule HOM05D008490 ORTHO05D010725 1.8e-70 269.6 132 96.2
ECA039G0024 Erigeron canadensis HOM05D008490 ORTHO05D010725 5.7e-69 264.6 129 96.9
Lsat_1_v5_gn_5_16680 Lactuca sativa HOM05D008490 ORTHO05D010725 9.7e-69 263.8 131 94.7
CSS0048923 Camellia sinensis var. sinensis HOM05D008490 ORTHO05D010725 1.7e-68 263.1 126 98.4
Sed0023681 Sechium edule HOM05D008490 ORTHO05D010725 7.7e-66 254.2 126 96.0
Sopen00g006810 Solanum pennellii HOM05D008490 ORTHO05D010725 1.5e-64 250.0 132 90.9
MBI05_g05344_MAGBIO Magnolia biondii HOM05D008490 ORTHO05D010725 9.4e-64 247.3 115 98.3
Actinidia34838 Actinidia chinensis HOM05D008490 ORTHO05D010725 3.6e-63 245.4 118 97.5
Sc14g0003240 Simmondsia chinensis HOM05D008490 ORTHO05D010725 6.1e-63 244.6 118 97.5
unitig_87.g27953 Utricularia gibba HOM05D008490 ORTHO05D010725 2.0e-61 239.6 118 95.8
Nitab4.5_0000172g1820 Nicotiana tabacum HOM05D008490 ORTHO05D010725 3.8e-57 225.3 168 69.6
PGSC0003DMG400004057 Solanum tuberosum HOM05D008490 ORTHO05D010725 3.5e-50 202.2 100 94.0
Sc25g0002270 Simmondsia chinensis HOM05D008490 ORTHO05D010725 3.2e-48 195.7 106 88.7
arahy.Tifrunner.gnm1.ann1.GRFW67 Arachis hypogaea HOM05D008490 ORTHO05D010725 4.4e-45 185.3 96 90.6
Sc11g0004340 Simmondsia chinensis HOM05D008490 ORTHO05D010725 4.9e-44 181.8 95 93.7
Peaxi162Scf00477g00823 Petunia axillaris HOM05D008490 ORTHO05D010725 5.4e-43 178.3 92 90.2
MBI14_g38259_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D010725 6.8e-38 161.4 79 91.1
MBI16_g26183_MAGBIO Magnolia biondii HOM05D001356 ORTHO05D008843 5.7e-37 158.3 73 98.6
Nitab4.5_0004632g0020 Nicotiana tabacum HOM05D008490 ORTHO05D010725 6.4e-36 154.8 132 59.1
CSS0002229 Camellia sinensis var. sinensis HOM05D008490 ORTHO05D010725 4.6e-34 148.7 126 63.5
Lsat_1_v5_gn_5_16200 Lactuca sativa HOM05D005210 ORTHO05D010286 1.9e-32 143.3 65 96.9
Nitab4.5_0006476g0030 Nicotiana tabacum HOM05D008490 ORTHO05D010725 4.3e-32 142.1 68 94.1
Peaxi162Scf00000g58015 Petunia axillaris HOM05D008490 ORTHO05D010725 2.7e-26 122.9 69 88.4
arahy.Tifrunner.gnm1.ann1.38FWT1 Arachis hypogaea HOM05D008490 ORTHO05D010725 2.3e-25 119.8 59 96.6
Hma1.2p1_0621F.1_g190810 Hydrangea macrophylla HOM05D008490 ORTHO05D010725 4.7e-23 112.1 55 96.4
Nitab4.5_0005831g0100 Nicotiana tabacum HOM05D008490 ORTHO05D010725 4.7e-23 112.1 56 85.7
MBI05_g40994_MAGBIO Magnolia biondii HOM05D008490 ORTHO05D010725 3.1e-22 109.4 52 98.1
Hma1.2p1_0435F.1_g152380 Hydrangea macrophylla HOM05D008490 ORTHO05D010725 6.8e-22 108.2 51 98.0
Nn2g14502 Nelumbo nucifera HOM05D008490 ORTHO05D010725 3.4e-21 105.9 46 97.8
Peaxi162Scf00677g00334 Petunia axillaris HOM05D008490 ORTHO05D010725 6.4e-20 101.7 64 82.8
SGA_v2.0_scaffold245G44789 Striga asiatica HOM05D008490 ORTHO05D010725 1.9e-19 100.1 48 91.7
Phvul.002G106400 Phaseolus vulgaris HOM05D008490 ORTHO05D010725 2.4e-19 99.8 49 85.7
CBR_g3174 Chara braunii HOM05D008490 ORTHO05D010725 7.6e-13 78.2 51 78.4
PGSC0003DMG400023070 Solanum tuberosum HOM05D008490 ORTHO05D010725 6.4e-12 75.1 35 91.4
EL10Ac6g15366 Beta vulgaris HOM05D007952 ORTHO05D009823 8.4e-12 74.7 97 43.3
arahy.Tifrunner.gnm1.ann1.TT5YJH Arachis hypogaea HOM05D007952 ORTHO05D009823 1.6e-10 70.5 96 45.8
Lj1g0013448 Lotus japonicus HOM05D007952 ORTHO05D009823 2.1e-10 70.1 93 44.1
Nitab4.5_0000127g0060 Nicotiana tabacum HOM05D008490 ORTHO05D010725 2.7e-10 69.7 37 81.1
arahy.Tifrunner.gnm1.ann1.B37VQ6 Arachis hypogaea HOM05D007952 ORTHO05D009823 2.3e-09 66.6 88 42.0
Medtr4g006040 Medicago truncatula HOM05D008037 ORTHO05D009823 2.3e-09 66.6 93 41.9
arahy.Tifrunner.gnm1.ann1.GIFH8E Arachis hypogaea HOM05D007952 ORTHO05D009823 1.6e-07 60.5 88 45.5
arahy.Tifrunner.gnm1.ann1.XUIM66 Arachis hypogaea HOM05D007952 ORTHO05D009823 8.1e-07 58.2 85 45.9
Medtr3g463160 Medicago truncatula HOM05D021415 ORTHO05D010725 8.1e-07 58.2 31 83.9


User provided reference genes

Program Settings