Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0013312 Lotus japonicus HOM05D003436 ORTHO05D003674 4.8e-86 321.2 174 100.0
Ca_25707_v3 Cicer arietinum L. HOM05D003436 ORTHO05D003674 1.4e-40 170.2 186 64.5
Medtr1g053970 Medicago truncatula HOM05D003436 ORTHO05D003674 3.8e-35 152.1 179 62.6
Glyma.19G147200 Glycine max HOM05D003436 ORTHO05D003674 7.5e-31 137.9 165 54.5
Lalb_Chr04g0261031 Lupinus albus HOM05D003436 ORTHO05D003674 6.3e-30 134.8 270 40.4
Glyma.03G144400 Glycine max HOM05D003436 ORTHO05D003674 2.0e-28 129.8 164 51.8
Psat6g120960 Pisum sativum HOM05D003436 ORTHO05D003674 4.5e-28 128.6 177 57.6
Phvul.001G143100 Phaseolus vulgaris HOM05D003436 ORTHO05D003674 5.9e-28 128.3 165 51.5
Ca_08518_v3 Cicer arietinum L. HOM05D003436 ORTHO05D003674 8.6e-27 124.4 164 51.8
Psat3g068920 Pisum sativum HOM05D003436 ORTHO05D003674 3.3e-26 122.5 181 48.6
Migut.J01829 Erythranthe guttata HOM05D003436 ORTHO05D003674 4.2e-26 122.1 165 49.7
CsaV3_4G030630 Cucumis sativus L. HOM05D003436 ORTHO05D003674 5.5e-26 121.7 172 48.3
ClCG04G002110 Citrullus lanatus HOM05D003436 ORTHO05D003674 7.2e-26 121.3 176 48.3
Aa31sc24G30 Aethionema arabicum HOM05D003436 ORTHO05D003674 2.8e-25 119.4 159 48.4
TWI53G0478 Tripterygium wilfordii HOM05D003436 ORTHO05D003674 3.6e-25 119.0 159 50.9
Ciclev10012978m.g Citrus clementina HOM05D003436 ORTHO05D003674 1.4e-24 117.1 160 48.1
Eucgr.K01836 Eucalyptus grandis HOM05D003436 ORTHO05D003674 6.8e-24 114.8 171 49.1
ECA236G0475 Erigeron canadensis HOM05D000402 ORTHO05D000263 8.9e-24 114.4 167 49.7
TWI74G0976 Tripterygium wilfordii HOM05D003436 ORTHO05D003674 1.2e-23 114.0 155 49.7
PSO339G4457 Papaver somniferum HOM05D003436 ORTHO05D003674 1.5e-23 113.6 165 49.7
HanXRQChr05g0132881 Helianthus annuus HOM05D003436 ORTHO05D003674 2.0e-23 113.2 171 48.5
Oeu033740.1 Olea europaea HOM05D003436 ORTHO05D003674 2.0e-23 113.2 164 50.0
arahy.Tifrunner.gnm1.ann1.95S5ZX Arachis hypogaea HOM05D003436 ORTHO05D003674 2.6e-23 112.8 133 57.9
Glyma.09G112100 Glycine max HOM05D003436 ORTHO05D003674 5.7e-23 111.7 114 60.5
Nitab4.5_0008334g0020 Nicotiana tabacum HOM05D003436 ORTHO05D003674 7.5e-23 111.3 166 50.0
arahy.Tifrunner.gnm1.ann1.00VVAL Arachis hypogaea HOM05D003436 ORTHO05D003674 9.8e-23 110.9 133 57.9
FAN02G3232 Fragaria x ananassa HOM05D003436 ORTHO05D003674 9.8e-23 110.9 167 47.3
Peaxi162Scf00258g00520 Petunia axillaris HOM05D003436 ORTHO05D003674 9.8e-23 110.9 164 50.6
VMungo1383G0252 Vigna mungo HOM05D003436 ORTHO05D003674 9.8e-23 110.9 164 47.6
Medtr7g093170 Medicago truncatula HOM05D003436 ORTHO05D003674 1.3e-22 110.5 166 48.8
TPR.G27745 Trifolium pratense HOM05D003436 ORTHO05D003674 2.2e-22 109.8 107 63.6
MELO3C008930.2 Cucumis melo HOM05D003436 ORTHO05D003674 4.9e-22 108.6 169 46.2
MD12G1057800 Malus domestica HOM05D003436 ORTHO05D003674 1.1e-21 107.5 173 48.6
RcHm_v2.0_Chr3g0479771 Rosa chinensis HOM05D003436 ORTHO05D003674 1.1e-21 107.5 178 44.9
Nitab4.5_0001538g0030 Nicotiana tabacum HOM05D003436 ORTHO05D003674 2.4e-21 106.3 164 46.3
Prupe.7G076400 Prunus persica HOM05D003436 ORTHO05D003674 4.1e-21 105.5 174 46.6
FvH4_6g22410 Fragaria vesca HOM05D003436 ORTHO05D003674 5.4e-21 105.1 168 47.0
Lj1g0001300 Lotus japonicus HOM05D003436 ORTHO05D003674 9.2e-21 104.4 155 49.0
Nitab4.5_0000105g0070 Nicotiana tabacum HOM05D003436 ORTHO05D003674 2.0e-20 103.2 164 45.7
Potri.016G046350 Populus trichocarpa HOM05D003436 ORTHO05D003674 2.0e-20 103.2 170 47.6
SGA_v2.0_scaffold105G30485 Striga asiatica HOM05D003436 ORTHO05D003674 2.0e-20 103.2 149 49.7
VMungo0720G0768 Vigna mungo HOM05D003436 ORTHO05D003674 2.0e-20 103.2 178 46.1
FAN14G5712 Fragaria x ananassa HOM05D003436 ORTHO05D003674 2.7e-20 102.8 166 46.4
Aqoxy7G03903 Aquilegia oxysepala HOM05D003436 ORTHO05D003674 3.5e-20 102.4 148 46.6
Dinv14293 Davidia involucrata HOM05D003436 ORTHO05D003674 3.5e-20 102.4 163 43.6
Cpa.g.sc85.72 Carica papaya HOM05D003436 ORTHO05D003674 4.5e-20 102.1 157 45.9
Lalb_Chr15g0078981 Lupinus albus HOM05D003436 ORTHO05D003674 4.5e-20 102.1 173 45.1
arahy.Tifrunner.gnm1.ann1.BAUA8N Arachis hypogaea HOM05D003436 ORTHO05D003674 5.9e-20 101.7 150 48.7
CANSAT64G0020 Cannabis sativa HOM05D003436 ORTHO05D003674 1.3e-19 100.5 153 45.8
Peaxi162Scf00003g04347 Petunia axillaris HOM05D003436 ORTHO05D003674 1.3e-19 100.5 164 46.3
Sed0015125 Sechium edule HOM05D003436 ORTHO05D003674 1.3e-19 100.5 179 44.1
Medtr7g093140 Medicago truncatula HOM05D003436 ORTHO05D003674 2.9e-19 99.4 88 67.0
Ah.08g210350 Amaranthus hybridus HOM05D003436 ORTHO05D003674 3.8e-19 99.0 167 46.1
Dinv14294 Davidia involucrata HOM05D003436 ORTHO05D003674 5.0e-19 98.6 163 48.5
AUR62012039 Chenopodium quinoa HOM05D003436 ORTHO05D003674 6.6e-19 98.2 190 41.6
Thecc.05G170800 Theobroma cacao HOM05D003436 ORTHO05D003674 6.6e-19 98.2 170 45.9
C03p03320 Brassica napus HOM05D003436 ORTHO05D003674 8.6e-19 97.8 158 43.7
BolC3t12875H Brassica oleracea HOM05D003436 ORTHO05D003674 8.6e-19 97.8 158 43.7
Medtr7g093160 Medicago truncatula HOM05D003436 ORTHO05D003674 8.6e-19 97.8 97 63.9
Gohir.D01G178300 Gossypium hirsutum HOM05D003436 ORTHO05D003674 1.5e-18 97.1 169 42.0
Gorai.002G224800 Gossypium raimondii HOM05D003436 ORTHO05D003674 1.5e-18 97.1 169 42.0
ATR0605G384 Amborella trichopoda HOM05D003436 ORTHO05D003674 3.3e-18 95.9 166 44.0
A10p29610 Brassica napus HOM05D003436 ORTHO05D003674 4.3e-18 95.5 169 41.4
BraA10t45003Z Brassica rapa HOM05D003436 ORTHO05D003674 4.3e-18 95.5 169 41.4
BcaB01g06022 Brassica carinata HOM05D003436 ORTHO05D003674 5.6e-18 95.1 158 44.3
QL07p023622 Quercus lobata HOM05D003436 ORTHO05D003674 5.6e-18 95.1 87 63.2
C03p03280 Brassica napus HOM05D003436 ORTHO05D003674 7.3e-18 94.7 158 45.6
COL.COLO4_33990 Corchorus olitorius HOM05D011887 ORTHO05D003674 7.3e-18 94.7 164 45.1
BcaB01g06026 Brassica carinata HOM05D003436 ORTHO05D003674 1.2e-17 94.0 156 44.9
Gohir.A01G191700 Gossypium hirsutum HOM05D003436 ORTHO05D003674 1.6e-17 93.6 164 40.9
arahy.Tifrunner.gnm1.ann1.6M6V4C Arachis hypogaea HOM05D003436 ORTHO05D003674 2.1e-17 93.2 151 46.4
BcaB01g06002 Brassica carinata HOM05D003436 ORTHO05D003674 2.1e-17 93.2 171 40.9
C09p69990 Brassica napus HOM05D003436 ORTHO05D003674 2.8e-17 92.8 169 40.8
BolC9t59741H Brassica oleracea HOM05D003436 ORTHO05D003674 2.8e-17 92.8 169 40.8
Manes.08G044900 Manihot esculenta HOM05D003436 ORTHO05D003674 2.8e-17 92.8 162 45.7
Nitab4.5_0000324g0100 Nicotiana tabacum HOM05D003436 ORTHO05D003674 3.6e-17 92.4 159 47.2
Sc19g0007020 Simmondsia chinensis HOM05D003436 ORTHO05D003674 4.7e-17 92.0 166 42.2
BcaC06g32392 Brassica carinata HOM05D003436 ORTHO05D003674 8.0e-17 91.3 169 40.2
CAN.G1161.31 Capsicum annuum HOM05D003436 ORTHO05D003674 8.0e-17 91.3 99 56.6
MSTRG.19903 Avicennia marina HOM05D003436 ORTHO05D003674 1.4e-16 90.5 117 53.8
Sp6g36090 Schrenkiella parvula HOM05D003436 ORTHO05D003674 1.4e-16 90.5 162 43.2
A03p02880 Brassica napus HOM05D003436 ORTHO05D003674 1.8e-16 90.1 159 43.4
BraA03t09652Z Brassica rapa HOM05D003436 ORTHO05D003674 1.8e-16 90.1 159 43.4
Ca_05483_v3 Cicer arietinum L. HOM05D003436 ORTHO05D003674 1.8e-16 90.1 100 58.0
Actinidia22034 Actinidia chinensis HOM05D003436 ORTHO05D003674 2.3e-16 89.7 152 46.7
BcaC06g32544 Brassica carinata HOM05D003436 ORTHO05D003674 2.3e-16 89.7 158 42.4
AT5G06760 Arabidopsis thaliana HOM05D003436 ORTHO05D003674 4.0e-16 89.0 157 40.8
Phvul.007G259400 Phaseolus vulgaris HOM05D003436 ORTHO05D003674 5.2e-16 88.6 163 42.3
AUR62015378 Chenopodium quinoa HOM05D003436 ORTHO05D003674 8.9e-16 87.8 185 40.0
MBI04_g39831_MAGBIO Magnolia biondii HOM05D003436 ORTHO05D003674 8.9e-16 87.8 165 41.8
CARHR206420 Cardamine hirsuta HOM05D003436 ORTHO05D003674 1.5e-15 87.0 163 42.3
Phvul.001G142000 Phaseolus vulgaris HOM05D003436 ORTHO05D003674 1.5e-15 87.0 120 48.3
Sabra16G0050300 Salix brachista HOM05D003436 ORTHO05D003674 2.0e-15 86.7 173 43.4
EL10Ac3g06923 Beta vulgaris HOM05D003436 ORTHO05D003674 2.6e-15 86.3 167 38.9
Thhalv10014897m.g Eutrema salsugineum HOM05D003436 ORTHO05D003674 7.5e-15 84.7 168 38.1
DCAR_013554 Daucus carota HOM05D003436 ORTHO05D003674 9.8e-15 84.3 166 42.2
Cc06_g15980 Coffea canephora HOM05D003436 ORTHO05D003674 1.3e-14 84.0 159 41.5
Psat0s797g0240 Pisum sativum HOM05D003436 ORTHO05D003674 1.7e-14 83.6 94 55.3
Peaxi162Scf00003g04337 Petunia axillaris HOM05D003436 ORTHO05D003674 2.2e-14 83.2 131 45.8
Solyc10g078780.2 Solanum lycopersicum HOM05D003436 ORTHO05D003674 2.2e-14 83.2 102 53.9
THA.LOC104826769 Tarenaya hassleriana HOM05D003436 ORTHO05D003674 2.2e-14 83.2 149 44.3
PGSC0003DMG400011439 Solanum tuberosum HOM05D003436 ORTHO05D003674 2.9e-14 82.8 105 52.4
AL6G16870 Arabidopsis lyrata HOM05D003436 ORTHO05D003674 4.9e-14 82.0 161 40.4
Sopen10g029400 Solanum pennellii HOM05D003436 ORTHO05D003674 4.9e-14 82.0 99 53.5
ClCG10G017480 Citrullus lanatus HOM05D003436 ORTHO05D003674 6.4e-14 81.6 82 53.7
Aqoxy6G00181 Aquilegia oxysepala HOM05D003436 ORTHO05D003674 1.1e-13 80.9 146 39.7
CsaV3_3G038880 Cucumis sativus L. HOM05D003436 ORTHO05D003674 1.1e-13 80.9 82 53.7
Rhsim03G0006400 Rhododendron simsii HOM05D003436 ORTHO05D003674 1.1e-13 80.9 161 42.2
Psat0s797g0160 Pisum sativum HOM05D003436 ORTHO05D003674 2.4e-13 79.7 94 54.3
TWI77G0090 Tripterygium wilfordii HOM05D003436 ORTHO05D003674 4.1e-13 79.0 91 54.9
Cfa020171 Carpinus fangiana HOM05D003436 ORTHO05D003674 5.4e-13 78.6 161 41.0
Dinv24076 Davidia involucrata HOM05D003436 ORTHO05D003674 5.4e-13 78.6 133 45.9
MBI04_g14513_MAGBIO Magnolia biondii HOM05D003436 ORTHO05D003674 5.4e-13 78.6 107 50.5
GSVIVG01033505001 Vitis vinifera HOM05D003436 ORTHO05D003674 5.4e-13 78.6 168 39.9
MELO3C009631.2 Cucumis melo HOM05D003436 ORTHO05D003674 9.2e-13 77.8 82 51.2
Nitab4.5_0000105g0110 Nicotiana tabacum HOM05D003436 ORTHO05D003674 9.2e-13 77.8 96 51.0
Nn7g36015 Nelumbo nucifera HOM05D003436 ORTHO05D003674 1.2e-12 77.4 94 51.1
Sed0019071 Sechium edule HOM05D003436 ORTHO05D003674 1.2e-12 77.4 163 39.3
Atru.chr8.1096 Acer truncatum HOM05D003436 ORTHO05D003674 1.6e-12 77.0 108 50.9
CDE06G2670 Ceratophyllum demersum HOM05D003436 ORTHO05D003674 1.6e-12 77.0 127 47.2
Nitab4.5_0002343g0050 Nicotiana tabacum HOM05D003436 ORTHO05D003674 1.6e-12 77.0 99 51.5
vmacro07911 Vaccinium macrocarpon HOM05D003436 ORTHO05D003674 1.6e-12 77.0 182 36.8
VMungo1383G0066 Vigna mungo HOM05D003436 ORTHO05D003674 1.6e-12 77.0 99 49.5
SalBow4G2804 Salvia bowleyana HOM05D003436 ORTHO05D003674 3.5e-12 75.9 95 53.7
Hma1.2p1_0386F.1_g141820 Hydrangea macrophylla HOM05D003436 ORTHO05D003674 6.0e-12 75.1 159 40.3
Sc19g0007030 Simmondsia chinensis HOM05D003436 ORTHO05D003674 7.8e-12 74.7 79 53.2
TPR.G27779 Trifolium pratense HOM05D003436 ORTHO05D003674 1.0e-11 74.3 130 43.8
GSVIVG01033503001 Vitis vinifera HOM05D003436 ORTHO05D003674 1.3e-11 73.9 83 50.6
Carub.0006s0565 Capsella rubella HOM05D003436 ORTHO05D003674 1.7e-11 73.6 155 37.4
Haze_19983 Corylus avellana HOM05D003436 ORTHO05D003674 8.6e-11 71.2 153 39.9
Rhsim03G0006300 Rhododendron simsii HOM05D003436 ORTHO05D003674 8.6e-11 71.2 167 42.5
Sed0013894 Sechium edule HOM05D003436 ORTHO05D003674 1.1e-10 70.9 116 43.1
Nitab4.5_0008334g0040 Nicotiana tabacum HOM05D003436 ORTHO05D003674 1.5e-10 70.5 111 44.1
PGSC0003DMG400011437 Solanum tuberosum HOM05D003436 ORTHO05D003674 1.5e-10 70.5 91 50.5
Zm00001eb414650 Zea mays HOM05D003436 ORTHO05D003674 1.5e-10 70.5 155 38.7
CAN.G1161.29 Capsicum annuum HOM05D003436 ORTHO05D003674 1.9e-10 70.1 114 43.9
unitig_899.g15079 Utricularia gibba HOM05D003436 ORTHO05D003674 1.9e-10 70.1 86 50.0
Lsat_1_v5_gn_8_75321 Lactuca sativa HOM05D003436 ORTHO05D003674 3.3e-10 69.3 76 57.9
vmacro07912 Vaccinium macrocarpon HOM05D003436 ORTHO05D003674 3.3e-10 69.3 172 36.6
Oeu034263.1 Olea europaea HOM05D008970 ORTHO05D003674 5.6e-10 68.6 147 41.5
DCAR_019788 Daucus carota HOM05D003436 ORTHO05D003674 7.3e-10 68.2 175 34.3
ECA236G0537 Erigeron canadensis HOM05D003436 ORTHO05D003674 7.3e-10 68.2 124 43.5
Aqoxy2G03681 Aquilegia oxysepala HOM05D003436 ORTHO05D003674 1.2e-09 67.4 60 61.7
Aqoxy7G02037 Aquilegia oxysepala HOM05D003436 ORTHO05D003674 1.2e-09 67.4 60 61.7
Nitab4.5_0000105g0100 Nicotiana tabacum HOM05D003436 ORTHO05D003674 6.2e-09 65.1 81 51.9
PSO017G1578 Papaver somniferum HOM05D003436 ORTHO05D003674 6.2e-09 65.1 64 56.2
Sopen10g029380 Solanum pennellii HOM05D003436 ORTHO05D003674 1.1e-08 64.3 86 48.8
Ah.13g075890 Amaranthus hybridus HOM05D003436 ORTHO05D003674 1.4e-08 63.9 82 47.6
SalBow1G8531 Salvia bowleyana HOM05D003436 ORTHO05D003674 1.4e-08 63.9 88 47.7
Nitab4.5_0000324g0070 Nicotiana tabacum HOM05D003436 ORTHO05D003674 1.8e-08 63.5 67 52.2
HanXRQChr02g0048381 Helianthus annuus HOM05D003436 ORTHO05D003674 2.3e-08 63.2 122 42.6
Solyc10g078760.2 Solanum lycopersicum HOM05D003436 ORTHO05D003674 2.3e-08 63.2 86 47.7
Nitab4.5_0001538g0010 Nicotiana tabacum HOM05D003436 ORTHO05D003674 4.0e-08 62.4 86 48.8
Aqoxy3G02738 Aquilegia oxysepala HOM05D003436 ORTHO05D003674 6.8e-08 61.6 54 61.1
Nitab4.5_0000105g0080 Nicotiana tabacum HOM05D003436 ORTHO05D003674 6.8e-08 61.6 81 49.4
CAN.G1161.30 Capsicum annuum HOM05D003436 ORTHO05D003674 8.9e-08 61.2 69 52.2
unitig_736.g22300 Utricularia gibba HOM05D000267 ORTHO05D000298 8.9e-08 61.2 94 43.6
PGR142G2110 Punica granatum HOM05D003436 ORTHO05D003674 1.2e-07 60.8 104 40.4
Actinidia32390 Actinidia chinensis HOM05D003436 ORTHO05D003674 2.0e-07 60.1 123 43.9
PSO170G2585 Papaver somniferum HOM05D003436 ORTHO05D003674 2.0e-07 60.1 58 56.9
Zm00001eb308610 Zea mays HOM05D003436 ORTHO05D003674 2.0e-07 60.1 104 47.1
PGSC0003DMG400011438 Solanum tuberosum HOM05D003436 ORTHO05D003674 2.6e-07 59.7 94 44.7
HanXRQChr10g0300671 Helianthus annuus HOM05D003436 ORTHO05D003674 5.8e-07 58.5 100 43.0
Oeu007767.1 Olea europaea HOM05D003436 ORTHO05D003674 5.8e-07 58.5 81 46.9
Solyc10g078770.2 Solanum lycopersicum HOM05D003436 ORTHO05D003674 5.8e-07 58.5 68 50.0
Sopen10g029390 Solanum pennellii HOM05D003436 ORTHO05D003674 5.8e-07 58.5 68 50.0
Haze_19981 Corylus avellana HOM05D003436 ORTHO05D003674 7.5e-07 58.2 115 43.5
TPR.G435 Trifolium pratense HOM05D003436 ORTHO05D003674 9.8e-07 57.8 36 88.9
TPR.G18942 Trifolium pratense HOM05D003436 ORTHO05D003674 1.7e-06 57.0 36 88.9
Cfa020173 Carpinus fangiana HOM05D003436 ORTHO05D003674 2.2e-06 56.6 78 48.7
Lsat_1_v5_gn_9_26540 Lactuca sativa HOM05D003436 ORTHO05D003674 2.9e-06 56.2 93 45.2


User provided reference genes

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