Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0012981 Lotus japonicus HOM05D006422 ORTHO05D007992 3.7e-126 454.9 232 100.0
Phvul.001G058000 Phaseolus vulgaris HOM05D006422 ORTHO05D007992 6.8e-96 354.4 231 77.5
Ca_12880_v3 Cicer arietinum L. HOM05D006422 ORTHO05D007992 4.4e-95 351.7 234 77.8
VMungo0647G2190 Vigna mungo HOM05D006422 ORTHO05D007992 7.5e-95 350.9 231 77.1
Medtr1g009980 Medicago truncatula HOM05D006422 ORTHO05D007992 1.7e-94 349.7 237 76.4
Lalb_Chr14g0362181 Lupinus albus HOM05D006422 ORTHO05D007992 3.7e-94 348.6 191 88.0
TPR.G11997 Trifolium pratense HOM05D006422 ORTHO05D007992 1.6e-92 343.2 234 76.5
arahy.Tifrunner.gnm1.ann1.43EIBT Arachis hypogaea HOM05D006422 ORTHO05D007992 1.7e-91 339.7 238 73.5
Psat6g032000 Pisum sativum HOM05D006422 ORTHO05D007992 1.7e-91 339.7 235 76.2
arahy.Tifrunner.gnm1.ann1.D9GJPD Arachis hypogaea HOM05D006422 ORTHO05D007992 6.6e-91 337.8 238 71.8
Cfa013253 Carpinus fangiana HOM05D006422 ORTHO05D007992 3.4e-87 325.5 205 78.0
Glyma.17G201600 Glycine max HOM05D006422 ORTHO05D007992 3.7e-86 322.0 219 76.7
CiPaw.07G214400 Carya illinoinensis HOM05D006422 ORTHO05D007992 1.6e-84 316.6 230 70.9
Duzib168G1765 Durio zibethinus HOM05D006422 ORTHO05D007992 1.6e-84 316.6 208 71.2
Ciclev10009324m.g Citrus clementina HOM05D006422 ORTHO05D007992 5.9e-84 314.7 238 69.3
Thecc.09G005200 Theobroma cacao HOM05D006422 ORTHO05D007992 7.8e-84 314.3 207 72.9
GSVIVG01035544001 Vitis vinifera HOM05D006422 ORTHO05D007992 1.7e-83 313.2 224 71.9
CANSAT25G0758 Cannabis sativa HOM05D006422 ORTHO05D007992 1.6e-81 306.6 200 74.0
QL12p024696 Quercus lobata HOM05D006422 ORTHO05D007992 2.8e-81 305.8 196 76.0
Atru.chr7.2615_Atru.chr7.2616 Acer truncatum HOM05D006422 ORTHO05D007992 3.6e-81 305.4 220 69.1
RcHm_v2.0_Chr6g0312201 Rosa chinensis HOM05D006422 ORTHO05D007992 1.1e-80 303.9 201 69.7
Sabra06G0214100 Salix brachista HOM05D006422 ORTHO05D007992 1.1e-80 303.9 211 72.5
AUR62020627 Chenopodium quinoa HOM05D006422 ORTHO05D007992 2.3e-80 302.8 242 68.2
FvH4_2g30680 Fragaria vesca HOM05D006422 ORTHO05D007992 2.3e-80 302.8 244 63.1
Manes.16G136400 Manihot esculenta HOM05D006422 ORTHO05D007992 2.3e-80 302.8 221 70.6
CAN.G1364.3 Capsicum annuum HOM05D006422 ORTHO05D007992 3.1e-80 302.4 218 68.8
Prupe.1G462100 Prunus persica HOM05D006422 ORTHO05D007992 3.1e-80 302.4 208 70.2
PGSC0003DMG400009533 Solanum tuberosum HOM05D006422 ORTHO05D007992 4.0e-80 302.0 221 69.7
MD15G1109900 Malus domestica HOM05D006422 ORTHO05D007992 5.2e-80 301.6 201 70.6
Potri.006G276400 Populus trichocarpa HOM05D006422 ORTHO05D007992 5.2e-80 301.6 211 71.6
COL.COLO4_18610 Corchorus olitorius HOM05D006422 ORTHO05D007992 8.9e-80 300.8 190 74.7
Migut.A00443 Erythranthe guttata HOM05D006422 ORTHO05D007992 8.9e-80 300.8 208 71.6
FAN24G2382 Fragaria x ananassa HOM05D006422 ORTHO05D007992 1.2e-79 300.4 244 62.7
Thhalv10014537m.g Eutrema salsugineum HOM05D006422 ORTHO05D007992 2.0e-79 299.7 239 64.4
Sopen08g002130 Solanum pennellii HOM05D006422 ORTHO05D007992 5.8e-79 298.1 218 70.2
PGR042G1463 Punica granatum HOM05D006422 ORTHO05D007992 7.5e-79 297.7 233 65.2
Solyc08g006160.4 Solanum lycopersicum HOM05D006422 ORTHO05D007992 9.8e-79 297.4 218 70.2
A03p09710 Brassica napus HOM05D006422 ORTHO05D007992 2.2e-78 296.2 236 63.6
BraA03t10287Z Brassica rapa HOM05D006422 ORTHO05D007992 2.2e-78 296.2 236 63.6
Dinv10868 Davidia involucrata HOM05D006422 ORTHO05D007992 2.2e-78 296.2 241 65.1
Dinv26550 Davidia involucrata HOM05D006422 ORTHO05D007992 2.2e-78 296.2 241 65.1
Aa31LG9G9500 Aethionema arabicum HOM05D006422 ORTHO05D007992 2.9e-78 295.8 189 73.0
AL6G31470 Arabidopsis lyrata HOM05D006422 ORTHO05D007992 4.9e-78 295.0 240 64.2
Aqoxy5G03915 Aquilegia oxysepala HOM05D006422 ORTHO05D007992 8.3e-78 294.3 228 68.9
Nn1g01726 Nelumbo nucifera HOM05D006422 ORTHO05D007992 8.3e-78 294.3 185 77.3
THA.LOC104811048 Tarenaya hassleriana HOM05D006422 ORTHO05D007992 8.3e-78 294.3 240 63.8
BcaB08g36552 Brassica carinata HOM05D006422 ORTHO05D007992 1.1e-77 293.9 211 68.2
CARHR192910 Cardamine hirsuta HOM05D006422 ORTHO05D007992 1.1e-77 293.9 240 63.3
BcaB01g04848 Brassica carinata HOM05D006422 ORTHO05D007992 2.4e-77 292.7 238 63.0
TAR383G0184 Trochodendron aralioides HOM05D006422 ORTHO05D007992 2.4e-77 292.7 210 69.0
AT5G19940 Arabidopsis thaliana HOM05D006422 ORTHO05D007992 4.1e-77 292.0 239 64.0
A10p19790 Brassica napus HOM05D006422 ORTHO05D007992 4.1e-77 292.0 231 64.1
BraA10t44055Z Brassica rapa HOM05D006422 ORTHO05D007992 4.1e-77 292.0 231 64.1
FAN27G3442 Fragaria x ananassa HOM05D006422 ORTHO05D007992 4.1e-77 292.0 202 68.3
BcaB01g04822 Brassica carinata HOM05D006422 ORTHO05D007992 5.4e-77 291.6 237 62.9
C03p11290 Brassica napus HOM05D006422 ORTHO05D007992 5.4e-77 291.6 237 62.9
Eucgr.C02103 Eucalyptus grandis HOM05D006422 ORTHO05D007992 5.4e-77 291.6 211 68.2
TWI34G0909 Tripterygium wilfordii HOM05D006422 ORTHO05D007992 5.4e-77 291.6 235 66.0
Cc04_g09430 Coffea canephora HOM05D006422 ORTHO05D007992 7.0e-77 291.2 226 65.5
BolC3t13599H Brassica oleracea HOM05D006422 ORTHO05D007992 9.2e-77 290.8 237 62.9
Carub.0006s1831 Capsella rubella HOM05D006422 ORTHO05D007992 9.2e-77 290.8 240 62.5
BcaC04g19400 Brassica carinata HOM05D006422 ORTHO05D007992 1.2e-76 290.4 211 67.3
C09p56110 Brassica napus HOM05D006422 ORTHO05D007992 1.2e-76 290.4 211 67.3
BolC9t58478H Brassica oleracea HOM05D006422 ORTHO05D007992 1.2e-76 290.4 211 67.3
Actinidia03579 Actinidia chinensis HOM05D006422 ORTHO05D007992 1.6e-76 290.0 198 72.2
Sc09g0007930 Simmondsia chinensis HOM05D006422 ORTHO05D007992 2.0e-76 289.7 236 64.0
Peaxi162Scf00045g01530 Petunia axillaris HOM05D006422 ORTHO05D007992 2.7e-76 289.3 199 73.4
Gohir.D06G108900 Gossypium hirsutum HOM05D006422 ORTHO05D007992 6.0e-76 288.1 203 68.5
Sp6g24440 Schrenkiella parvula HOM05D006422 ORTHO05D007992 6.0e-76 288.1 236 61.0
Gorai.010G123700 Gossypium raimondii HOM05D006422 ORTHO05D007992 1.3e-75 287.0 203 68.0
Nitab4.5_0000025g0080 Nicotiana tabacum HOM05D006422 ORTHO05D007992 1.7e-75 286.6 223 66.4
Hma1.2p1_0534F.1_g173720 Hydrangea macrophylla HOM05D006422 ORTHO05D007992 3.0e-75 285.8 200 70.5
EL10Ac2g03719 Beta vulgaris HOM05D006422 ORTHO05D007992 5.0e-75 285.0 251 63.3
PSO170G4757 Papaver somniferum HOM05D006422 ORTHO05D007992 5.0e-75 285.0 212 66.5
Gohir.A06G106700 Gossypium hirsutum HOM05D006422 ORTHO05D007992 8.6e-75 284.3 207 68.1
PSO017G3510 Papaver somniferum HOM05D006422 ORTHO05D007992 1.5e-74 283.5 212 66.5
HPP92_004705 Vanilla planifolia HOM05D006422 ORTHO05D007992 1.9e-74 283.1 200 68.5
AUR62038756 Chenopodium quinoa HOM05D006422 ORTHO05D007992 5.6e-74 281.6 164 81.7
MBI13_g31531_MAGBIO Magnolia biondii HOM05D006422 ORTHO05D007992 7.3e-74 281.2 195 70.3
Rhsim07G0170200 Rhododendron simsii HOM05D006422 ORTHO05D007992 7.3e-74 281.2 230 62.6
CDE04G2326 Ceratophyllum demersum HOM05D006422 ORTHO05D007992 3.6e-73 278.9 231 61.9
Haze_21696 Corylus avellana HOM05D006422 ORTHO05D007992 8.1e-73 277.7 224 65.2
DCAR_003025 Daucus carota HOM05D006422 ORTHO05D007992 1.1e-72 277.3 227 63.4
MSTRG.11814 Avicennia marina HOM05D006422 ORTHO05D007992 1.4e-72 276.9 218 65.1
Nitab4.5_0003259g0070 Nicotiana tabacum HOM05D006422 ORTHO05D007992 2.6e-71 272.7 211 66.8
Lsat_1_v5_gn_5_61061 Lactuca sativa HOM05D006422 ORTHO05D007992 4.4e-71 271.9 207 64.7
ClCG08G012780 Citrullus lanatus HOM05D006422 ORTHO05D007992 5.8e-71 271.6 228 63.6
HanXRQChr13g0412481 Helianthus annuus HOM05D006422 ORTHO05D007992 2.9e-70 269.2 218 63.8
unitig_748.g7381 Utricularia gibba HOM05D006422 ORTHO05D007992 4.9e-70 268.5 228 60.1
ATR0626G032 Amborella trichopoda HOM05D006422 ORTHO05D007992 1.9e-69 266.5 187 66.8
vmacro05107 Vaccinium macrocarpon HOM05D006422 ORTHO05D007992 2.4e-69 266.2 185 70.8
FAN20G1184 Fragaria x ananassa HOM05D006422 ORTHO05D007992 1.2e-68 263.8 180 67.2
Zm00001eb071430 Zea mays HOM05D006422 ORTHO05D007992 7.3e-66 254.6 225 61.8
SGA_v2.0_scaffold27G11666 Striga asiatica HOM05D006422 ORTHO05D007992 2.1e-65 253.1 236 59.3
CiPaw.08G017800 Carya illinoinensis HOM05D006422 ORTHO05D007992 4.7e-65 251.9 202 67.3
Os04g0607000 Oryza sativa ssp. japonica HOM05D006422 ORTHO05D007992 1.5e-63 246.9 231 57.6
Oeu018400.2 Olea europaea HOM05D006422 ORTHO05D007992 1.7e-62 243.4 156 72.4
FAN15G3645 Fragaria x ananassa HOM05D006422 ORTHO05D007992 9.2e-61 237.7 185 60.5
ECA240G0283 Erigeron canadensis HOM05D000069 ORTHO05D000060 1.6e-60 236.9 178 62.9
MELO3C011201.2 Cucumis melo HOM05D006422 ORTHO05D007992 9.0e-56 221.1 165 67.9
SEGI_33970 Sequoiadendron giganteum HOM05D006422 ORTHO05D007992 1.5e-55 220.3 190 54.7
Lj7A749G60 Lonicera japonica HOM05D006422 ORTHO05D007992 4.9e-54 215.3 121 81.8
Ah.11g043920 Amaranthus hybridus HOM05D006422 ORTHO05D007992 1.7e-51 206.8 203 57.1
Pp3c13_4790 Physcomitrium patens HOM05D006422 ORTHO05D007992 4.8e-49 198.7 171 50.9
AagrBONN_evm.TU.Sc2ySwM_228.4709 Anthoceros agrestis HOM05D006422 ORTHO05D007992 1.1e-48 197.6 164 53.7
Hma1.2p1_0534F.1_g173730 Hydrangea macrophylla HOM05D006422 ORTHO05D007992 1.2e-47 194.1 141 69.5
CSS0034711 Camellia sinensis var. sinensis HOM05D006422 ORTHO05D007992 2.6e-47 193.0 147 68.0
SMO364G0843 Selaginella moellendorffii HOM05D006422 ORTHO05D007992 2.6e-47 193.0 165 55.8
CSS0017479 Camellia sinensis var. sinensis HOM05D006422 ORTHO05D007992 9.9e-47 191.0 123 73.2
Mapoly0021s0119 Marchantia polymorpha HOM05D006422 ORTHO05D007992 1.3e-46 190.7 194 47.9
Gorai.002G101300 Gossypium raimondii HOM05D006422 ORTHO05D007992 9.0e-40 167.9 111 71.2
CSS0035518 Camellia sinensis var. sinensis HOM05D006422 ORTHO05D007992 4.8e-33 145.6 123 59.3
Oeu014126.1 Olea europaea HOM05D006422 ORTHO05D007992 2.3e-27 126.7 92 68.5
CBR_g3792 Chara braunii HOM05D006422 ORTHO05D007992 5.1e-27 125.6 173 37.0
Cre12.g502250 Chlamydomonas reinhardtii HOM05D006422 ORTHO05D007992 8.5e-22 108.2 226 34.1
MCO15G093 Micromonas commoda HOM05D006422 ORTHO05D007992 2.5e-21 106.7 210 33.8
PRCOL_00004658 Prasinoderma coloniale HOM05D006422 ORTHO05D007992 8.8e-19 98.2 206 33.0
Cre07.g325736 Chlamydomonas reinhardtii HOM05D006422 ORTHO05D007992 4.1e-16 89.4 160 28.1
Hund19396 Selenicereus undatus HOM05D006422 ORTHO05D007992 3.8e-14 82.8 114 46.5
PSO017G4111 Papaver somniferum HOM05D003483 ORTHO05D004101 1.1e-08 64.7 179 25.7
CDE02G1133 Ceratophyllum demersum HOM05D003483 ORTHO05D004101 1.8e-08 63.9 239 25.5
Potri.003G020700 Populus trichocarpa HOM05D003483 ORTHO05D004101 7.0e-08 62.0 243 26.3
Zm00001eb054390 Zea mays HOM05D003483 ORTHO05D004101 1.2e-07 61.2 177 25.4
CSS0026849 Camellia sinensis var. sinensis HOM05D003483 ORTHO05D004101 4.5e-07 59.3 174 25.3
GSVIVG01022995001 Vitis vinifera HOM05D003483 ORTHO05D004101 4.5e-07 59.3 171 24.0
CsaV3_1G045010 Cucumis sativus L. HOM05D003483 ORTHO05D004101 1.0e-06 58.2 181 23.8
Lsat_1_v5_gn_9_118240 Lactuca sativa HOM05D003483 ORTHO05D004101 1.3e-06 57.8 217 24.0
VMungo0540G1714 Vigna mungo HOM05D003483 ORTHO05D004101 1.7e-06 57.4 174 28.2
CAN.G336.10 Capsicum annuum HOM05D003483 ORTHO05D004101 2.2e-06 57.0 225 22.7
Cc02_g22350 Coffea canephora HOM05D003483 ORTHO05D004101 2.2e-06 57.0 177 24.3
MELO3C010097.2 Cucumis melo HOM05D003483 ORTHO05D004101 2.2e-06 57.0 218 22.5
Sabra01G0161900 Salix brachista HOM05D003483 ORTHO05D004101 2.9e-06 56.6 201 24.4
MSTRG.5236 Avicennia marina HOM05D003483 ORTHO05D004101 3.8e-06 56.2 178 28.1
Lj9A307T41 Lonicera japonica HOM05D003483 ORTHO05D004101 3.8e-06 56.2 179 23.5
Ciclev10002308m.g Citrus clementina HOM05D003483 ORTHO05D004101 5.0e-06 55.8 210 25.7
Cc02_g22380 Coffea canephora HOM05D003483 ORTHO05D004101 5.0e-06 55.8 179 22.9
Potri.001G209600 Populus trichocarpa HOM05D003483 ORTHO05D004101 5.0e-06 55.8 204 24.0
MD15G1421400 Malus domestica HOM05D003483 ORTHO05D004101 6.5e-06 55.5 174 21.8
CiPaw.05G043400 Carya illinoinensis HOM05D003483 ORTHO05D004101 8.5e-06 55.1 240 24.2


User provided reference genes

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