Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0012746 Lotus japonicus HOM05D005419 ORTHO05D007365 9.7e-172 606.7 297 100.0
Medtr1g012830 Medicago truncatula HOM05D005419 ORTHO05D007365 5.0e-160 567.8 297 92.6
Glyma.14G113800 Glycine max HOM05D005419 ORTHO05D007365 5.5e-159 564.3 297 92.3
Phvul.001G049700 Phaseolus vulgaris HOM05D005419 ORTHO05D007365 5.5e-159 564.3 297 92.3
Ca_13036_v3 Cicer arietinum L. HOM05D005419 ORTHO05D007365 3.6e-158 561.6 297 90.6
VMungo0647G0032 Vigna mungo HOM05D005419 ORTHO05D007365 1.0e-157 560.1 297 91.6
TPR.G14021 Trifolium pratense HOM05D005419 ORTHO05D007365 4.0e-157 558.1 297 91.2
Psat6g028000 Pisum sativum HOM05D005419 ORTHO05D007365 1.4e-154 549.7 297 89.6
Lalb_Chr23g0268401 Lupinus albus HOM05D005419 ORTHO05D007365 2.0e-153 545.8 294 89.8
arahy.Tifrunner.gnm1.ann1.2DG9CD Arachis hypogaea HOM05D005419 ORTHO05D007365 7.2e-151 537.3 293 87.4
arahy.Tifrunner.gnm1.ann1.X3TF0E Arachis hypogaea HOM05D005419 ORTHO05D007365 7.2e-151 537.3 293 87.4
TWI34G1484 Tripterygium wilfordii HOM05D005419 ORTHO05D007365 2.3e-149 532.3 289 86.9
QL02p020871 Quercus lobata HOM05D005419 ORTHO05D007365 8.8e-149 530.4 288 87.2
PGR119G2552 Punica granatum HOM05D005419 ORTHO05D007365 5.7e-148 527.7 288 85.4
RcHm_v2.0_Chr6g0297381 Rosa chinensis HOM05D005419 ORTHO05D007365 5.7e-148 527.7 288 85.8
SalBow4G1212 Salvia bowleyana HOM05D005419 ORTHO05D007365 5.7e-148 527.7 288 86.5
Potri.018G023700 Populus trichocarpa HOM05D005419 ORTHO05D007365 9.8e-148 526.9 288 85.8
MD15G1129200 Malus domestica HOM05D005419 ORTHO05D007365 2.8e-147 525.4 288 85.8
Cfa013117 Carpinus fangiana HOM05D005419 ORTHO05D007365 3.7e-147 525.0 287 86.1
CANSAT25G3306 Cannabis sativa HOM05D005419 ORTHO05D007365 6.3e-147 524.2 286 86.4
FvH4_2g28610 Fragaria vesca HOM05D005419 ORTHO05D007365 6.3e-147 524.2 287 86.1
FAN24G2053 Fragaria x ananassa HOM05D005419 ORTHO05D007365 6.3e-147 524.2 287 86.1
Eucgr.K02838 Eucalyptus grandis HOM05D005419 ORTHO05D007365 1.4e-146 523.1 288 85.1
Gorai.010G116600 Gossypium raimondii HOM05D005419 ORTHO05D007365 1.8e-146 522.7 288 85.8
Gohir.A06G099500 Gossypium hirsutum HOM05D005419 ORTHO05D007365 4.1e-146 521.5 288 85.4
Atru.chr7.2482 Acer truncatum HOM05D005419 ORTHO05D007365 5.4e-146 521.2 290 83.4
FAN20G2331 Fragaria x ananassa HOM05D005419 ORTHO05D007365 5.4e-146 521.2 287 85.4
CiPaw.07G226000 Carya illinoinensis HOM05D005419 ORTHO05D007365 7.0e-146 520.8 288 85.4
Manes.16G125000 Manihot esculenta HOM05D005419 ORTHO05D007365 7.0e-146 520.8 288 84.0
Ciclev10009082m.g Citrus clementina HOM05D005419 ORTHO05D007365 1.2e-145 520.0 288 85.4
CsaV3_2G032220 Cucumis sativus L. HOM05D005419 ORTHO05D007365 1.6e-145 519.6 288 84.0
Gohir.D06G101700 Gossypium hirsutum HOM05D005419 ORTHO05D007365 2.0e-145 519.2 288 85.4
Gohir.D05G058700 Gossypium hirsutum HOM05D005419 ORTHO05D007365 3.5e-145 518.5 288 84.4
Gorai.009G059800 Gossypium raimondii HOM05D005419 ORTHO05D007365 3.5e-145 518.5 288 84.4
MD08G1152600 Malus domestica HOM05D005419 ORTHO05D007365 4.5e-145 518.1 288 85.1
Dinv15871 Davidia involucrata HOM05D005419 ORTHO05D007365 1.3e-144 516.5 288 83.7
GSVIVG01035939001 Vitis vinifera HOM05D005419 ORTHO05D007365 1.3e-144 516.5 287 84.0
Potri.006G258200 Populus trichocarpa HOM05D005419 ORTHO05D007365 1.7e-144 516.2 288 85.1
Cc08_g00340 Coffea canephora HOM05D005419 ORTHO05D007365 2.3e-144 515.8 288 84.0
MELO3C011274.2 Cucumis melo HOM05D005419 ORTHO05D007365 2.3e-144 515.8 288 83.3
Duzib150G0083 Durio zibethinus HOM05D005419 ORTHO05D007365 2.3e-144 515.8 288 84.0
TAR383G1021 Trochodendron aralioides HOM05D005419 ORTHO05D007365 2.9e-144 515.4 288 82.6
EL10Ac2g04167 Beta vulgaris HOM05D005419 ORTHO05D007365 3.8e-144 515.0 286 84.3
HanXRQChr13g0387991 Helianthus annuus HOM05D005419 ORTHO05D007365 3.8e-144 515.0 288 82.6
Sed0010362 Sechium edule HOM05D005419 ORTHO05D007365 3.8e-144 515.0 288 82.6
ECA248G3461 Erigeron canadensis HOM05D005419 ORTHO05D007365 1.5e-143 513.1 288 82.3
CSS0019044 Camellia sinensis var. sinensis HOM05D005419 ORTHO05D007365 1.9e-143 512.7 288 82.6
Nn2g12192 Nelumbo nucifera HOM05D005419 ORTHO05D007365 1.9e-143 512.7 288 83.0
BcaB06g28051 Brassica carinata HOM05D005419 ORTHO05D007365 2.5e-143 512.3 288 82.6
FAN27G2423 Fragaria x ananassa HOM05D005419 ORTHO05D007365 4.2e-143 511.5 287 85.0
Nitab4.5_0014723g0010 Nicotiana tabacum HOM05D005419 ORTHO05D007365 2.8e-142 508.8 288 83.0
Hma1.2p1_0974F.1_g243070 Hydrangea macrophylla HOM05D005419 ORTHO05D007365 3.6e-142 508.4 288 82.6
MSTRG.26021 Avicennia marina HOM05D005419 ORTHO05D007365 4.7e-142 508.1 289 82.7
THA.LOC104805589 Tarenaya hassleriana HOM05D005419 ORTHO05D007365 4.7e-142 508.1 288 82.6
A04p19650 Brassica napus HOM05D005419 ORTHO05D007365 8.0e-142 507.3 288 81.6
BraA04t17556Z Brassica rapa HOM05D005419 ORTHO05D007365 8.0e-142 507.3 288 81.6
Haze_21481 Corylus avellana HOM05D005419 ORTHO05D007365 8.0e-142 507.3 318 77.0
Cpa.g.sc187.13 Carica papaya HOM05D005419 ORTHO05D007365 1.0e-141 506.9 290 82.8
Peaxi162Scf00935g00015 Petunia axillaris HOM05D005419 ORTHO05D007365 1.4e-141 506.5 288 81.6
Thecc.09G020800 Theobroma cacao HOM05D005419 ORTHO05D007365 4.0e-141 505.0 290 82.1
Sc09g0010330 Simmondsia chinensis HOM05D005419 ORTHO05D007365 5.2e-141 504.6 292 81.8
unitig_32.g10881 Utricularia gibba HOM05D005419 ORTHO05D007365 8.9e-141 503.8 288 80.9
BolC4t27063H Brassica oleracea HOM05D005419 ORTHO05D007365 1.2e-140 503.4 289 80.6
Aa31sc229G10 Aethionema arabicum HOM05D005419 ORTHO05D007365 2.0e-140 502.7 288 80.9
Migut.A00016 Erythranthe guttata HOM05D005419 ORTHO05D007365 2.0e-140 502.7 288 81.6
Sopen08g010000 Solanum pennellii HOM05D005419 ORTHO05D007365 2.0e-140 502.7 288 81.9
C04p55260 Brassica napus HOM05D005419 ORTHO05D007365 2.6e-140 502.3 289 80.3
Thhalv10000272m.g Eutrema salsugineum HOM05D005419 ORTHO05D007365 2.6e-140 502.3 289 81.0
Solyc08g029110.3 Solanum lycopersicum HOM05D005419 ORTHO05D007365 3.4e-140 501.9 288 82.3
Sp4g04430 Schrenkiella parvula HOM05D005419 ORTHO05D007365 4.4e-140 501.5 289 80.6
Carub.0004s0490 Capsella rubella HOM05D005419 ORTHO05D007365 7.5e-140 500.7 289 80.6
BcaC02g08359 Brassica carinata HOM05D005419 ORTHO05D007365 9.8e-140 500.4 289 79.9
Lj8A726G39 Lonicera japonica HOM05D005419 ORTHO05D007365 9.8e-140 500.4 288 80.9
DCAR_003104 Daucus carota HOM05D005419 ORTHO05D007365 1.7e-139 499.6 288 80.9
SGA_v2.0_scaffold20G09092 Striga asiatica HOM05D005419 ORTHO05D007365 4.9e-139 498.0 289 81.7
THA.LOC104815027 Tarenaya hassleriana HOM05D005419 ORTHO05D007365 4.9e-139 498.0 284 83.1
Actinidia14096 Actinidia chinensis HOM05D005419 ORTHO05D007365 6.3e-139 497.7 278 83.1
AUR62012434 Chenopodium quinoa HOM05D005419 ORTHO05D007365 8.3e-139 497.3 285 83.2
AUR62031558 Chenopodium quinoa HOM05D005419 ORTHO05D007365 1.4e-138 496.5 291 82.5
AL4G16610 Arabidopsis lyrata HOM05D005419 ORTHO05D007365 4.1e-138 495.0 288 79.9
CANSAT54G2335 Cannabis sativa HOM05D005419 ORTHO05D007365 4.1e-138 495.0 286 81.1
BcaB08g35172 Brassica carinata HOM05D005419 ORTHO05D007365 9.2e-138 493.8 289 79.2
Nitab4.5_0007718g0040 Nicotiana tabacum HOM05D005419 ORTHO05D007365 2.7e-137 492.3 288 80.9
AT2G25280 Arabidopsis thaliana HOM05D005419 ORTHO05D007365 3.5e-137 491.9 288 79.2
Prupe.1G484800 Prunus persica HOM05D005419 ORTHO05D007365 7.8e-137 490.7 272 84.9
Aqoxy7G03594 Aquilegia oxysepala HOM05D005419 ORTHO05D007365 1.3e-136 490.0 288 79.5
A09p55730 Brassica napus HOM05D005419 ORTHO05D007365 1.3e-136 490.0 288 78.5
BraA09t40974Z Brassica rapa HOM05D005419 ORTHO05D007365 1.3e-136 490.0 288 78.5
FAN15G2739 Fragaria x ananassa HOM05D005419 ORTHO05D007365 3.8e-136 488.4 276 83.3
PSO210G4598 Papaver somniferum HOM05D005419 ORTHO05D007365 6.6e-136 487.6 289 78.9
Sabra18G0026400 Salix brachista HOM05D005419 ORTHO05D007365 6.6e-136 487.6 271 84.9
C08p38730 Brassica napus HOM05D005419 ORTHO05D007365 8.6e-136 487.3 286 78.7
BolC8t51443H Brassica oleracea HOM05D005419 ORTHO05D007365 8.6e-136 487.3 286 78.7
BcaC07g40875 Brassica carinata HOM05D005419 ORTHO05D007365 3.3e-135 485.3 285 78.6
vmacro05161 Vaccinium macrocarpon HOM05D005419 ORTHO05D007365 2.1e-134 482.6 272 83.8
MBI15_g25765_MAGBIO Magnolia biondii HOM05D005419 ORTHO05D007365 1.0e-133 480.3 288 77.8
HPP92_000481 Vanilla planifolia HOM05D005419 ORTHO05D007365 1.0e-133 480.3 287 76.3
Os08g0299000 Oryza sativa ssp. japonica HOM05D005419 ORTHO05D007365 3.0e-133 478.8 288 76.4
CDE03G0272 Ceratophyllum demersum HOM05D005419 ORTHO05D007365 6.8e-133 477.6 285 78.6
Lsat_1_v5_gn_5_157921 Lactuca sativa HOM05D005419 ORTHO05D007365 4.1e-130 468.4 285 78.6
Sed0006243 Sechium edule HOM05D005419 ORTHO05D007365 1.7e-128 463.0 287 74.2
Zm00001eb362830 Zea mays HOM05D005419 ORTHO05D007365 1.7e-128 463.0 291 75.3
ClCG08G013470 Citrullus lanatus HOM05D005419 ORTHO05D007365 2.3e-128 462.6 311 73.3
CARHR116260 Cardamine hirsuta HOM05D005419 ORTHO05D007365 5.0e-128 461.5 291 73.5
ATR0767G069 Amborella trichopoda HOM05D005419 ORTHO05D007365 8.6e-128 460.7 278 79.1
Duzib168G1909 Durio zibethinus HOM05D005419 ORTHO05D007365 1.9e-127 459.5 288 76.7
Rhsim12G0212900 Rhododendron simsii HOM05D005419 ORTHO05D007365 4.7e-126 454.9 288 76.7
COL.COLO4_18897 Corchorus olitorius HOM05D005419 ORTHO05D007365 2.3e-125 452.6 249 83.5
Hund04483 Selenicereus undatus HOM05D005419 ORTHO05D007365 1.3e-123 446.8 309 70.2
Dinv18189 Davidia involucrata HOM05D005419 ORTHO05D007365 1.0e-120 437.2 288 73.6
SMO358G0334 Selaginella moellendorffii HOM05D005419 ORTHO05D007365 3.0e-120 435.6 286 69.6
Mapoly0065s0048 Marchantia polymorpha HOM05D005419 ORTHO05D007365 5.1e-120 434.9 285 69.5
MBI15_g36826_MAGBIO Magnolia biondii HOM05D005419 ORTHO05D007365 2.3e-117 426.0 271 74.9
Pp3c14_17280 Physcomitrium patens HOM05D005419 ORTHO05D007365 4.0e-117 425.2 281 69.8
SEGI_34683 Sequoiadendron giganteum HOM05D005419 ORTHO05D007365 3.4e-116 422.2 271 71.2
Pp3c2_14390 Physcomitrium patens HOM05D005419 ORTHO05D007365 2.7e-113 412.5 267 71.5
CBR_g59364 Chara braunii HOM05D005419 ORTHO05D007365 2.0e-108 396.4 281 65.1
SEGI_02513 Sequoiadendron giganteum HOM05D005419 ORTHO05D007365 8.1e-102 374.4 221 80.1
Rhsim07G0160700 Rhododendron simsii HOM05D005419 ORTHO05D007365 6.9e-93 344.7 307 59.9
Oeu012280.1 Olea europaea HOM05D005419 ORTHO05D007365 1.8e-88 330.1 207 76.8
THA.LOC104815144 Tarenaya hassleriana HOM05D005419 ORTHO05D007365 3.0e-88 329.3 183 84.7
CAN.G75.9 Capsicum annuum HOM05D005419 ORTHO05D007365 2.0e-84 316.6 184 81.0
Cre02.g096200 Chlamydomonas reinhardtii HOM05D005419 ORTHO05D007365 4.5e-84 315.5 287 50.5
Sabra06G0201900 Salix brachista HOM05D005419 ORTHO05D007365 5.5e-82 308.5 171 84.2
PRCOL_00000176 Prasinoderma coloniale HOM05D005419 ORTHO05D007365 1.1e-79 300.8 294 52.0
MCO07G667 Micromonas commoda HOM05D005419 ORTHO05D007365 2.5e-79 299.7 290 53.4
AagrBONN_evm.TU.Sc2ySwM_368.1912 Anthoceros agrestis HOM05D005419 ORTHO05D007365 5.3e-77 292.0 188 71.3
Haze_26290 Corylus avellana HOM05D005419 ORTHO05D007365 7.6e-76 288.1 295 49.8
Lalb_Chr11g0063641 Lupinus albus HOM05D005419 ORTHO05D007365 3.3e-63 246.1 164 75.6
Cfa026845 Carpinus fangiana HOM05D005419 ORTHO05D007365 1.0e-56 224.6 315 43.5
FAN09G2129 Fragaria x ananassa HOM05D005419 ORTHO05D019206 2.2e-54 216.9 222 53.6
FAN28G2535 Fragaria x ananassa HOM05D005419 ORTHO05D019206 9.1e-53 211.5 222 52.7
Oeu012278.1 Olea europaea HOM05D005419 ORTHO05D007365 3.7e-46 189.5 104 82.7
FAN02G2313 Fragaria x ananassa HOM05D005419 ORTHO05D019206 2.2e-43 180.3 100 84.0
FAN01G2683 Fragaria x ananassa HOM05D005419 ORTHO05D019206 3.8e-43 179.5 99 84.8
FAN21G3387 Fragaria x ananassa HOM05D005419 ORTHO05D019206 5.2e-40 169.1 94 84.0
Os05g0310750 Oryza sativa ssp. japonica HOM05D005419 ORTHO05D019206 2.7e-28 130.2 76 80.3
FAN05G2233 Fragaria x ananassa HOM05D004769 ORTHO05D005605 2.0e-23 114.0 166 40.4
FAN16G2296 Fragaria x ananassa HOM05D005419 ORTHO05D019206 9.2e-21 105.1 94 60.6
MBI12_g19406_MAGBIO Magnolia biondii HOM05D005419 ORTHO05D242193 4.7e-09 66.2 51 56.9
Prupe.1G567700 Prunus persica HOM05D005419 ORTHO05D019206 8.9e-08 62.0 40 77.5


User provided reference genes

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