Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0012316 Lotus japonicus HOM05D005179 ORTHO05D006225 8.6e-76 287.0 150 100.0
Medtr1g032050 Medicago truncatula HOM05D005179 ORTHO05D006225 3.8e-39 165.2 158 63.3
Medtr1g032400 Medicago truncatula HOM05D005179 ORTHO05D006225 3.8e-39 165.2 158 63.3
Lalb_Chr21g0306521 Lupinus albus HOM05D005179 ORTHO05D006225 8.4e-39 164.1 152 61.2
Glyma.02G148700 Glycine max HOM05D005179 ORTHO05D006225 2.7e-37 159.1 152 63.8
Phvul.001G149300 Phaseolus vulgaris HOM05D005179 ORTHO05D006225 4.6e-37 158.3 149 62.4
Glyma.10G025200 Glycine max HOM05D005179 ORTHO05D006225 6.0e-37 157.9 152 63.2
Glyma.19G154300 Glycine max HOM05D005179 ORTHO05D006225 1.0e-36 157.1 158 60.1
Phvul.007G170000 Phaseolus vulgaris HOM05D005179 ORTHO05D006225 1.0e-36 157.1 152 55.9
Glyma.03G151700 Glycine max HOM05D005179 ORTHO05D006225 3.0e-36 155.6 148 58.8
TPR.G1598 Trifolium pratense HOM05D005179 ORTHO05D006225 3.0e-36 155.6 155 59.4
VMungo0720G0860 Vigna mungo HOM05D005179 ORTHO05D006225 9.6e-35 150.6 150 54.0
Ca_08572_v3 Cicer arietinum L. HOM05D005179 ORTHO05D006225 1.1e-33 147.1 166 53.0
Ca_09769_v3 Cicer arietinum L. HOM05D005179 ORTHO05D006225 6.9e-33 144.4 155 60.6
Lj1g0021337 Lotus japonicus HOM05D005179 ORTHO05D006225 3.4e-32 142.1 161 52.8
Psat3g065120 Pisum sativum HOM05D005179 ORTHO05D006225 4.5e-32 141.7 173 51.4
Psat6g061040 Pisum sativum HOM05D005179 ORTHO05D006225 4.5e-32 141.7 138 60.1
VMungo1383G3409 Vigna mungo HOM05D005179 ORTHO05D006225 5.8e-32 141.4 151 56.3
Medtr7g094650 Medicago truncatula HOM05D005179 ORTHO05D006225 7.6e-32 141.0 177 49.7
Lalb_Chr01g0020211 Lupinus albus HOM05D005179 ORTHO05D006225 6.4e-31 137.9 176 50.0
arahy.Tifrunner.gnm1.ann1.YN028F Arachis hypogaea HOM05D000257 ORTHO05D009070 8.4e-31 137.5 160 56.9
Lalb_Chr25g0290231 Lupinus albus HOM05D005179 ORTHO05D006225 4.2e-30 135.2 188 47.9
arahy.Tifrunner.gnm1.ann1.AZF37F Arachis hypogaea HOM05D000257 ORTHO05D009070 7.1e-30 134.4 160 56.2
TWI59G1208 Tripterygium wilfordii HOM05D005179 ORTHO05D006225 1.3e-26 123.6 149 44.3
CsaV3_7G028640 Cucumis sativus L. HOM05D005179 ORTHO05D006225 3.7e-26 122.1 146 49.3
Atru.chr5.1383 Acer truncatum HOM05D005179 ORTHO05D006225 1.1e-25 120.6 164 42.7
Sabra14G0104900 Salix brachista HOM05D005179 ORTHO05D006225 2.4e-25 119.4 162 45.7
Ciclev10024447m.g Citrus clementina HOM05D005179 ORTHO05D006225 1.2e-24 117.1 149 43.0
Haze_04736 Corylus avellana HOM05D005179 ORTHO05D006225 1.5e-24 116.7 152 48.0
CANSAT25G0479 Cannabis sativa HOM05D005179 ORTHO05D006225 2.0e-24 116.3 152 44.7
Nitab4.5_0001028g0210 Nicotiana tabacum HOM05D005179 ORTHO05D006225 2.6e-24 115.9 141 41.8
Thecc.01G282700 Theobroma cacao HOM05D005179 ORTHO05D006225 7.6e-24 114.4 149 46.3
Dinv32955 Davidia involucrata HOM05D005179 ORTHO05D006225 1.0e-23 114.0 157 47.1
MELO3C015854.2 Cucumis melo HOM05D005179 ORTHO05D006225 1.3e-23 113.6 154 48.7
Sabra02G0167400 Salix brachista HOM05D005179 ORTHO05D006225 1.7e-23 113.2 139 43.9
DCAR_018411 Daucus carota HOM05D005179 ORTHO05D006225 2.2e-23 112.8 153 45.1
MD11G1289000 Malus domestica HOM05D000257 ORTHO05D009070 2.2e-23 112.8 150 46.0
Potri.014G139200 Populus trichocarpa HOM05D005179 ORTHO05D006225 4.9e-23 111.7 156 47.4
Dinv11251 Davidia involucrata HOM05D005179 ORTHO05D006225 6.5e-23 111.3 125 50.4
TWI59G0379 Tripterygium wilfordii HOM05D005179 ORTHO05D006225 1.4e-22 110.2 220 35.9
MSTRG.18220 Avicennia marina HOM05D005179 ORTHO05D006225 1.9e-22 109.8 156 40.4
Prupe.8G243700 Prunus persica HOM05D005179 ORTHO05D006225 1.9e-22 109.8 173 44.5
Hma1.2p1_0628F.1_g191965 Hydrangea macrophylla HOM05D005179 ORTHO05D006225 2.5e-22 109.4 172 40.1
Gorai.007G135300 Gossypium raimondii HOM05D005179 ORTHO05D006225 3.2e-22 109.0 154 44.8
Oeu015958.1 Olea europaea HOM05D005179 ORTHO05D006225 3.2e-22 109.0 141 47.5
MSTRG.21570 Avicennia marina HOM05D005179 ORTHO05D006225 4.2e-22 108.6 142 50.0
CSS0035012 Camellia sinensis var. sinensis HOM05D005179 ORTHO05D006225 5.5e-22 108.2 166 41.0
Gohir.D11G126500 Gossypium hirsutum HOM05D005179 ORTHO05D006225 5.5e-22 108.2 154 44.2
Potri.002G215200 Populus trichocarpa HOM05D005179 ORTHO05D006225 5.5e-22 108.2 113 48.7
Gohir.A11G121400 Gossypium hirsutum HOM05D005179 ORTHO05D006225 9.3e-22 107.5 152 43.4
SalBow6G3683 Salvia bowleyana HOM05D005179 ORTHO05D006225 1.2e-21 107.1 108 50.9
Sed0008634 Sechium edule HOM05D005179 ORTHO05D006225 1.2e-21 107.1 155 40.6
ClCG07G000210 Citrullus lanatus HOM05D005179 ORTHO05D006225 2.7e-21 105.9 151 45.7
ClCG09G006920 Citrullus lanatus HOM05D000257 ORTHO05D009070 3.5e-21 105.5 170 41.8
MD03G1268100 Malus domestica HOM05D005179 ORTHO05D006225 3.5e-21 105.5 133 41.4
Solyc09g064900.1 Solanum lycopersicum HOM05D005179 ORTHO05D006225 6.0e-21 104.8 113 53.1
Cfa006114 Carpinus fangiana HOM05D005179 ORTHO05D006225 1.0e-20 104.0 119 50.4
Duzib138G1054 Durio zibethinus HOM05D005179 ORTHO05D006225 1.0e-20 104.0 149 44.3
FAN20G2888 Fragaria x ananassa HOM05D005179 ORTHO05D006225 8.7e-20 100.9 153 41.2
Lsat_1_v5_gn_1_29921 Lactuca sativa HOM05D005179 ORTHO05D006225 8.7e-20 100.9 181 38.7
Sed0008870 Sechium edule HOM05D005179 ORTHO05D006225 8.7e-20 100.9 143 37.8
TAR636G3147 Trochodendron aralioides HOM05D005179 ORTHO05D006225 8.7e-20 100.9 170 40.0
CiPaw.07G093600 Carya illinoinensis HOM05D005179 ORTHO05D006225 1.5e-19 100.1 165 36.4
COL.COLO4_09131 Corchorus olitorius HOM05D005179 ORTHO05D006225 1.9e-19 99.8 155 39.4
Ah.08g213000 Amaranthus hybridus HOM05D005179 ORTHO05D006225 4.3e-19 98.6 159 39.0
Cpa.g.sc64.166 Carica papaya HOM05D005179 ORTHO05D006225 9.7e-19 97.4 148 43.9
RcHm_v2.0_Chr6g0291441 Rosa chinensis HOM05D005179 ORTHO05D006225 9.7e-19 97.4 203 36.5
Sed0002169 Sechium edule HOM05D005179 ORTHO05D006225 9.7e-19 97.4 150 42.7
unitig_8.g3720 Utricularia gibba HOM05D005179 ORTHO05D006225 9.7e-19 97.4 141 44.0
Ah.15g091740 Amaranthus hybridus HOM05D005179 ORTHO05D006225 1.3e-18 97.1 149 40.3
Potri.014G139100 Populus trichocarpa HOM05D005179 ORTHO05D006225 1.3e-18 97.1 160 38.8
PGR044G1538 Punica granatum HOM05D005179 ORTHO05D006225 1.3e-18 97.1 166 39.2
CiPaw.08G103900 Carya illinoinensis HOM05D005179 ORTHO05D006225 1.6e-18 96.7 162 44.4
Sc24g0004150 Simmondsia chinensis HOM05D005179 ORTHO05D006225 1.6e-18 96.7 159 37.1
Sopen09g026600 Solanum pennellii HOM05D005179 ORTHO05D006225 1.6e-18 96.7 116 50.0
Gohir.A12G005800 Gossypium hirsutum HOM05D005179 ORTHO05D006225 2.2e-18 96.3 140 38.6
SalBow4G1980 Salvia bowleyana HOM05D005179 ORTHO05D006225 4.8e-18 95.1 148 43.2
Sc05g0004870 Simmondsia chinensis HOM05D005179 ORTHO05D006225 4.8e-18 95.1 153 41.2
SGA_v2.0_scaffold11G05800 Striga asiatica HOM05D005179 ORTHO05D006225 6.3e-18 94.7 146 37.7
ECA247G2094 Erigeron canadensis HOM05D005179 ORTHO05D006225 1.1e-17 94.0 55 63.6
Gorai.009G014800 Gossypium raimondii HOM05D005179 ORTHO05D006225 1.1e-17 94.0 139 38.8
Manes.01G209300 Manihot esculenta HOM05D005179 ORTHO05D006225 1.4e-17 93.6 192 34.9
Gohir.D12G005300 Gossypium hirsutum HOM05D005179 ORTHO05D006225 2.4e-17 92.8 139 38.1
Gorai.008G005200 Gossypium raimondii HOM05D005179 ORTHO05D006225 2.4e-17 92.8 139 38.1
FvH4_2g23841 Fragaria vesca HOM05D005179 ORTHO05D006225 4.1e-17 92.0 54 66.7
Potri.004G022700 Populus trichocarpa HOM05D005179 ORTHO05D006225 4.1e-17 92.0 115 39.1
Eucgr.K03387 Eucalyptus grandis HOM05D005179 ORTHO05D006225 5.3e-17 91.7 140 37.1
FAN24G3244 Fragaria x ananassa HOM05D005179 ORTHO05D006225 5.3e-17 91.7 54 66.7
CAN.G609.9 Capsicum annuum HOM05D005179 ORTHO05D006225 6.9e-17 91.3 139 43.9
HanXRQChr15g0466391 Helianthus annuus HOM05D005179 ORTHO05D006225 9.0e-17 90.9 53 62.3
Sopen02g023170 Solanum pennellii HOM05D005179 ORTHO05D006225 9.0e-17 90.9 145 35.2
Migut.D00272 Erythranthe guttata HOM05D005179 ORTHO05D006225 1.2e-16 90.5 164 37.2
FAN15G0349 Fragaria x ananassa HOM05D005179 ORTHO05D006225 1.2e-16 90.5 54 66.7
FAN15G1538 Fragaria x ananassa HOM05D005179 ORTHO05D006225 1.2e-16 90.5 54 66.7
FAN27G1844 Fragaria x ananassa HOM05D005179 ORTHO05D006225 1.2e-16 90.5 54 64.8
Cc01_g19710 Coffea canephora HOM05D005179 ORTHO05D006225 1.5e-16 90.1 175 34.9
Manes.05G074000 Manihot esculenta HOM05D005179 ORTHO05D006225 3.4e-16 89.0 208 35.6
Nitab4.5_0002386g0020 Nicotiana tabacum HOM05D005179 ORTHO05D006225 3.4e-16 89.0 55 58.2
Rhsim13G0023300 Rhododendron simsii HOM05D005179 ORTHO05D006225 3.4e-16 89.0 189 32.8
DCAR_002746 Daucus carota HOM05D005179 ORTHO05D006225 5.9e-16 88.2 149 36.2
Manes.01G209200 Manihot esculenta HOM05D005179 ORTHO05D006225 5.9e-16 88.2 113 39.8
SGA_v2.0_scaffold80G25940 Striga asiatica HOM05D005179 ORTHO05D006225 2.2e-15 86.3 151 42.4
Manes.05G074200 Manihot esculenta HOM05D005179 ORTHO05D006225 2.9e-15 85.9 150 33.3
PGSC0003DMG400020123 Solanum tuberosum HOM05D005179 ORTHO05D006225 2.9e-15 85.9 149 36.2
Migut.N02158 Erythranthe guttata HOM05D005179 ORTHO05D006225 5.0e-15 85.1 151 41.1
Actinidia21103 Actinidia chinensis HOM05D000756 ORTHO05D000604 6.5e-15 84.7 118 43.2
Gohir.A08G069300 Gossypium hirsutum HOM05D005179 ORTHO05D006225 8.5e-15 84.3 174 36.2
THA.LOC104802228 Tarenaya hassleriana HOM05D005179 ORTHO05D006225 1.4e-14 83.6 179 32.4
Nn1g02158 Nelumbo nucifera HOM05D005179 ORTHO05D006225 2.5e-14 82.8 161 39.8
Aqoxy2G03259 Aquilegia oxysepala HOM05D005179 ORTHO05D006225 3.2e-14 82.4 166 39.2
Gorai.004G082400 Gossypium raimondii HOM05D005179 ORTHO05D006225 3.2e-14 82.4 177 34.5
Gohir.D08G077500 Gossypium hirsutum HOM05D005179 ORTHO05D006225 5.5e-14 81.6 166 33.1
Gohir.D08G077600 Gossypium hirsutum HOM05D005179 ORTHO05D006225 5.5e-14 81.6 169 33.7
GSVIVG01011106001 Vitis vinifera HOM05D005179 ORTHO05D006225 5.5e-14 81.6 53 56.6
A07p26240 Brassica napus HOM05D005179 ORTHO05D006225 1.2e-13 80.5 50 54.0
C06p28620 Brassica napus HOM05D005179 ORTHO05D006225 1.2e-13 80.5 50 54.0
BolC6t38030H Brassica oleracea HOM05D005179 ORTHO05D006225 1.2e-13 80.5 50 54.0
BraA07t30267Z Brassica rapa HOM05D005179 ORTHO05D006225 1.2e-13 80.5 50 54.0
CARHR173410 Cardamine hirsuta HOM05D005179 ORTHO05D006225 1.2e-13 80.5 50 54.0
ECA236G2709 Erigeron canadensis HOM05D005179 ORTHO05D006225 1.2e-13 80.5 52 53.8
Aa31LG10G16940 Aethionema arabicum HOM05D005179 ORTHO05D006225 1.6e-13 80.1 131 38.2
A09p54910 Brassica napus HOM05D000257 ORTHO05D009070 2.7e-13 79.3 50 52.0
C08p37810 Brassica napus HOM05D000257 ORTHO05D009070 2.7e-13 79.3 50 52.0
BolC8t51360H Brassica oleracea HOM05D000257 ORTHO05D009070 2.7e-13 79.3 50 52.0
BraA09t40901Z Brassica rapa HOM05D000257 ORTHO05D009070 2.7e-13 79.3 50 52.0
Rhsim01G0275800 Rhododendron simsii HOM05D000756 ORTHO05D000604 2.7e-13 79.3 160 33.1
Zm00001eb017420 Zea mays HOM05D005179 ORTHO05D006225 2.7e-13 79.3 48 60.4
Gorai.004G082500 Gossypium raimondii HOM05D005179 ORTHO05D006225 3.6e-13 79.0 163 31.9
vmacro14931 Vaccinium macrocarpon HOM05D001530 ORTHO05D003676 3.6e-13 79.0 119 38.7
Zm00001eb329500 Zea mays HOM05D005179 ORTHO05D006225 6.1e-13 78.2 48 58.3
THA.LOC104817549 Tarenaya hassleriana HOM05D005179 ORTHO05D006225 1.0e-12 77.4 167 30.5
Os07g0655800 Oryza sativa ssp. japonica HOM05D005179 ORTHO05D006225 1.4e-12 77.0 48 56.2
A04p00290 Brassica napus HOM05D005179 ORTHO05D006225 2.3e-12 76.3 50 48.0
C04p30120 Brassica napus HOM05D005179 ORTHO05D006225 2.3e-12 76.3 50 48.0
BolC4t24544H Brassica oleracea HOM05D005179 ORTHO05D006225 2.3e-12 76.3 50 48.0
BraA04t15748Z Brassica rapa HOM05D005179 ORTHO05D006225 2.3e-12 76.3 50 48.0
Zm00001eb394420 Zea mays HOM05D005179 ORTHO05D006225 2.3e-12 76.3 48 58.3
AL5G45930 Arabidopsis lyrata HOM05D005179 ORTHO05D006225 3.0e-12 75.9 50 50.0
AT3G63095 Arabidopsis thaliana HOM05D005179 ORTHO05D006225 3.0e-12 75.9 50 50.0
Carub.0005s2976 Capsella rubella HOM05D005179 ORTHO05D006225 3.0e-12 75.9 50 50.0
Os03g0357500 Oryza sativa ssp. japonica HOM05D005179 ORTHO05D006225 5.1e-12 75.1 48 56.2
PSO832G0665 Papaver somniferum HOM05D005179 ORTHO05D006225 8.8e-12 74.3 156 32.7
Aqoxy5G00531 Aquilegia oxysepala HOM05D001530 ORTHO05D003676 1.9e-11 73.2 53 47.2
ATR0626G310 Amborella trichopoda HOM05D005179 ORTHO05D006225 2.5e-11 72.8 119 42.0
PSO210G7214 Papaver somniferum HOM05D005179 ORTHO05D006225 7.4e-11 71.2 149 34.2
PSO210G2426 Papaver somniferum HOM05D005179 ORTHO05D006225 2.8e-10 69.3 53 43.4
PSO447G0321 Papaver somniferum HOM05D005179 ORTHO05D006225 8.2e-10 67.8 51 43.1
Nn4g26188 Nelumbo nucifera HOM05D005179 ORTHO05D006225 1.8e-09 66.6 47 51.1
Oeu028081.1 Olea europaea HOM05D005179 ORTHO05D006225 4.1e-09 65.5 49 46.9
SGA_v2.0_scaffold258G45766 Striga asiatica HOM05D005179 ORTHO05D006225 5.3e-09 65.1 146 31.5
QL12p022365 Quercus lobata HOM05D005179 ORTHO05D006225 9.1e-09 64.3 45 60.0
HPP92_008197 Vanilla planifolia HOM05D024720 ORTHO05D006225 4.5e-08 62.0 106 39.6
Actinidia00740 Actinidia chinensis HOM05D005179 ORTHO05D006225 1.0e-07 60.8 44 50.0
Gohir.A08G069200 Gossypium hirsutum HOM05D005179 ORTHO05D006225 2.9e-07 59.3 46 45.7
Zm00001eb042810 Zea mays HOM05D024720 ORTHO05D030308 8.5e-07 57.8 54 40.7
Nn3g17864 Nelumbo nucifera HOM05D005179 ORTHO05D006225 9.4e-06 54.3 108 28.7


User provided reference genes

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