Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0012132 Lotus japonicus HOM05D004036 ORTHO05D004576 2.0e-95 352.4 183 100.0
VMungo0647G1622 Vigna mungo HOM05D004036 ORTHO05D004576 5.4e-48 194.9 195 57.4
Glyma.14G129200 Glycine max HOM05D004036 ORTHO05D004576 1.6e-47 193.4 197 56.9
Glyma.17G203900 Glycine max HOM05D004036 ORTHO05D004576 2.7e-47 192.6 199 58.3
Phvul.001G055700 Phaseolus vulgaris HOM05D004036 ORTHO05D004576 3.3e-45 185.7 195 55.4
TPR.G20095 Trifolium pratense HOM05D004036 ORTHO05D004576 5.6e-45 184.9 188 57.4
Medtr1g011280 Medicago truncatula HOM05D004036 ORTHO05D004576 2.8e-44 182.6 185 57.8
Psat6g031000 Pisum sativum HOM05D004036 ORTHO05D004576 2.0e-42 176.4 189 55.0
Atru.chr7.2325 Acer truncatum HOM05D004036 ORTHO05D004576 3.8e-33 145.6 192 49.0
arahy.Tifrunner.gnm1.ann1.7NC9IZ Arachis hypogaea HOM05D004036 ORTHO05D004576 2.4e-32 142.9 194 53.6
arahy.Tifrunner.gnm1.ann1.AAJ54F Arachis hypogaea HOM05D004036 ORTHO05D004576 4.2e-32 142.1 194 53.1
Manes.16G068200 Manihot esculenta HOM05D004036 ORTHO05D004576 1.2e-31 140.6 191 45.5
Lalb_Chr23g0269031 Lupinus albus HOM05D004036 ORTHO05D004576 4.6e-31 138.7 172 52.3
Prupe.1G466700 Prunus persica HOM05D004036 ORTHO05D004576 3.0e-30 136.0 193 46.6
Cfa013210 Carpinus fangiana HOM05D004036 ORTHO05D004576 5.1e-30 135.2 187 44.9
CiPaw.08G015700 Carya illinoinensis HOM05D004036 ORTHO05D004576 8.7e-30 134.4 195 44.1
COL.COLO4_24066 Corchorus olitorius HOM05D004036 ORTHO05D004576 3.3e-29 132.5 193 43.0
Gohir.D06G047900 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.3e-29 132.5 190 44.7
Potri.006G246600 Populus trichocarpa HOM05D004036 ORTHO05D004576 3.3e-29 132.5 183 44.8
RcHm_v2.0_Chr6g0312751 Rosa chinensis HOM05D004036 ORTHO05D004576 5.6e-29 131.7 193 46.6
Lalb_Chr08g0243781 Lupinus albus HOM05D004036 ORTHO05D004576 1.3e-28 130.6 182 48.9
FAN27G0504 Fragaria x ananassa HOM05D004036 ORTHO05D004576 1.6e-28 130.2 177 46.9
Ciclev10009480m.g Citrus clementina HOM05D004036 ORTHO05D004576 2.1e-28 129.8 190 42.1
FAN20G2367 Fragaria x ananassa HOM05D004036 ORTHO05D004576 3.7e-28 129.0 177 46.3
Duzib150G0431 Durio zibethinus HOM05D004036 ORTHO05D004576 4.8e-28 128.6 195 43.6
FvH4_2g30160 Fragaria vesca HOM05D004036 ORTHO05D004576 4.8e-28 128.6 177 46.3
FAN24G0425 Fragaria x ananassa HOM05D004036 ORTHO05D004576 4.8e-28 128.6 177 46.3
Sabra18G0035300 Salix brachista HOM05D004036 ORTHO05D004576 4.8e-28 128.6 183 44.8
Duzib187G1985 Durio zibethinus HOM05D004036 ORTHO05D004576 8.1e-28 127.9 191 43.5
Sabra06G0192900 Salix brachista HOM05D004036 ORTHO05D004576 1.1e-27 127.5 201 42.3
Thecc.09G144100 Theobroma cacao HOM05D004036 ORTHO05D004576 1.4e-27 127.1 195 44.1
Gohir.A06G047900 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.4e-27 126.3 190 42.6
Gorai.009G011700 Gossypium raimondii HOM05D004036 ORTHO05D004576 4.0e-27 125.6 177 41.2
Gohir.D12G195700 Gossypium hirsutum HOM05D004036 ORTHO05D004576 6.9e-27 124.8 177 41.2
Manes.03G064800 Manihot esculenta HOM05D004036 ORTHO05D004576 6.9e-27 124.8 198 39.4
FAN15G1681 Fragaria x ananassa HOM05D004036 ORTHO05D004576 1.5e-26 123.6 177 45.2
Gohir.A05G010600 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.5e-26 123.6 177 41.8
Haze_21623 Corylus avellana HOM05D004036 ORTHO05D004576 2.6e-26 122.9 227 38.3
Gohir.A12G126300 Gossypium hirsutum HOM05D004036 ORTHO05D004576 7.6e-26 121.3 177 40.7
Gohir.D05G335100 Gossypium hirsutum HOM05D004036 ORTHO05D004576 7.6e-26 121.3 177 40.7
Gohir.D09G022200 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.3e-25 120.6 177 40.1
Gohir.A11G185400 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.7e-25 120.2 177 40.1
Gohir.A12G241700 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.7e-25 120.2 177 40.7
Gohir.D09G023175 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.9e-25 119.4 177 40.1
Gorai.004G151900 Gossypium raimondii HOM05D004036 ORTHO05D004576 6.4e-25 118.2 177 39.0
QL12p031289 Quercus lobata HOM05D004036 ORTHO05D004576 6.4e-25 118.2 188 44.1
CANSAT56G2568 Cannabis sativa HOM05D004036 ORTHO05D004576 1.4e-24 117.1 185 41.1
TWI63G0992 Tripterygium wilfordii HOM05D004036 ORTHO05D004576 7.1e-24 114.8 181 41.4
Gorai.008G052900 Gossypium raimondii HOM05D004036 ORTHO05D004576 1.6e-23 113.6 174 40.8
Lsat_1_v5_gn_3_108141 Lactuca sativa HOM05D004036 ORTHO05D004576 2.1e-23 113.2 152 42.8
PGR031G0366 Punica granatum HOM05D004036 ORTHO05D004576 4.6e-23 112.1 202 38.1
TAR624G0048 Trochodendron aralioides HOM05D004036 ORTHO05D004576 6.0e-23 111.7 201 40.8
Dinv35883 Davidia involucrata HOM05D004036 ORTHO05D004576 1.8e-22 110.2 154 46.8
TAR626G0352 Trochodendron aralioides HOM05D004036 ORTHO05D004576 2.3e-22 109.8 200 40.0
Gohir.D01G158400 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.0e-22 109.4 177 39.0
TWI34G1922 Tripterygium wilfordii HOM05D004036 ORTHO05D004576 3.9e-22 109.0 167 41.9
THA.LOC104799217 Tarenaya hassleriana HOM05D004036 ORTHO05D004576 1.1e-21 107.5 182 40.7
Hma1.2p1_0175F.1_g077210 Hydrangea macrophylla HOM05D004036 ORTHO05D004576 1.5e-21 107.1 180 41.1
Eucgr.C01818 Eucalyptus grandis HOM05D004036 ORTHO05D004576 1.9e-21 106.7 195 40.0
Aa31LG3G15750 Aethionema arabicum HOM05D004036 ORTHO05D004576 2.5e-21 106.3 177 41.8
Sp2g22000 Schrenkiella parvula HOM05D004036 ORTHO05D004576 2.5e-21 106.3 161 39.8
Gohir.D05G011350 Gossypium hirsutum HOM05D004036 ORTHO05D004576 4.3e-21 105.5 177 37.3
Nitab4.5_0006579g0060 Nicotiana tabacum HOM05D004036 ORTHO05D004576 1.6e-20 103.6 188 38.3
Peaxi162Scf00105g01426 Petunia axillaris HOM05D004036 ORTHO05D004576 1.6e-20 103.6 188 37.8
Nitab4.5_0000125g0270 Nicotiana tabacum HOM05D004036 ORTHO05D004576 2.1e-20 103.2 188 38.3
Gorai.010G053700 Gossypium raimondii HOM05D004036 ORTHO05D004576 4.8e-20 102.1 145 44.1
HanXRQChr13g0409481 Helianthus annuus HOM05D004036 ORTHO05D004576 4.8e-20 102.1 174 37.9
C07p42280 Brassica napus HOM05D004036 ORTHO05D004576 6.2e-20 101.7 178 36.5
ClCG05G017210 Citrullus lanatus HOM05D004036 ORTHO05D004576 6.2e-20 101.7 196 39.3
vmacro05446 Vaccinium macrocarpon HOM05D004036 ORTHO05D004576 6.2e-20 101.7 214 36.4
BolC7t44757H Brassica oleracea HOM05D004036 ORTHO05D004576 1.1e-19 100.9 178 36.5
Oeu045176.1 Olea europaea HOM05D004036 ORTHO05D004576 1.4e-19 100.5 202 37.6
A06p36250 Brassica napus HOM05D004036 ORTHO05D004576 1.8e-19 100.1 178 36.5
BraA06t26547Z Brassica rapa HOM05D004036 ORTHO05D004576 1.8e-19 100.1 178 36.5
Hma1.2p1_0003F.1_g003650 Hydrangea macrophylla HOM05D004036 ORTHO05D004576 2.4e-19 99.8 182 40.7
ECA240G1837 Erigeron canadensis HOM05D004036 ORTHO05D004576 4.0e-19 99.0 182 35.7
Thhalv10004997m.g Eutrema salsugineum HOM05D004036 ORTHO05D004576 4.0e-19 99.0 162 38.9
CsaV3_3G046690 Cucumis sativus L. HOM05D004036 ORTHO05D004576 9.0e-19 97.8 197 38.1
CAN.G21.9 Capsicum annuum HOM05D004036 ORTHO05D004576 4.5e-18 95.5 187 36.9
Carub.0006s2340 Capsella rubella HOM05D004036 ORTHO05D004576 5.8e-18 95.1 185 37.3
EL10Ac2g02537 Beta vulgaris HOM05D004036 ORTHO05D004576 2.2e-17 93.2 174 37.9
Sopen08g021750 Solanum pennellii HOM05D004036 ORTHO05D004576 2.2e-17 93.2 187 35.8
Aa31LG11G4630 Aethionema arabicum HOM05D004036 ORTHO05D004576 2.9e-17 92.8 184 35.9
AT5G25540 Arabidopsis thaliana HOM05D004036 ORTHO05D004576 6.5e-17 91.7 189 36.0
THA.LOC104815044 Tarenaya hassleriana HOM05D004036 ORTHO05D004576 6.5e-17 91.7 178 40.4
Gohir.A07G032200 Gossypium hirsutum HOM05D004036 ORTHO05D004576 8.4e-17 91.3 132 40.2
Gohir.A08G237500 Gossypium hirsutum HOM05D004036 ORTHO05D004576 8.4e-17 91.3 132 40.2
Solyc08g067810.3 Solanum lycopersicum HOM05D004036 ORTHO05D004576 8.4e-17 91.3 187 35.3
PGSC0003DMG400033628 Solanum tuberosum HOM05D004036 ORTHO05D004576 8.4e-17 91.3 187 34.8
AL6G22100 Arabidopsis lyrata HOM05D004036 ORTHO05D004576 1.1e-16 90.9 151 40.4
Sed0023915 Sechium edule HOM05D004036 ORTHO05D004576 1.1e-16 90.9 195 34.9
CARHR201790 Cardamine hirsuta HOM05D004036 ORTHO05D004576 1.4e-16 90.5 176 38.6
Cpa.g.sc91.6 Carica papaya HOM05D004036 ORTHO05D004576 1.4e-16 90.5 120 45.8
C02p59450 Brassica napus HOM05D004036 ORTHO05D004576 5.5e-16 88.6 173 37.0
DCAR_003061 Daucus carota HOM05D004036 ORTHO05D004576 5.5e-16 88.6 189 37.0
Migut.E01501 Erythranthe guttata HOM05D004036 ORTHO05D004576 5.5e-16 88.6 192 37.5
AL6G37340 Arabidopsis lyrata HOM05D004036 ORTHO05D004576 9.3e-16 87.8 175 37.1
CSS0014753 Camellia sinensis var. sinensis HOM05D004036 ORTHO05D004576 9.3e-16 87.8 149 37.6
CARHR187840 Cardamine hirsuta HOM05D004036 ORTHO05D004576 9.3e-16 87.8 161 36.6
BolC2t12008H Brassica oleracea HOM05D004036 ORTHO05D004576 1.2e-15 87.4 176 37.5
Thhalv10014836m.g Eutrema salsugineum HOM05D004036 ORTHO05D004576 2.7e-15 86.3 178 37.6
MD08G1136600 Malus domestica HOM05D004036 ORTHO05D004576 2.7e-15 86.3 83 59.0
MSTRG.1647 Avicennia marina HOM05D004036 ORTHO05D004576 4.6e-15 85.5 200 35.0
BcaB07g29991 Brassica carinata HOM05D004036 ORTHO05D004576 7.9e-15 84.7 161 37.3
BcaNung07259 Brassica carinata HOM05D000175 ORTHO05D000481 1.0e-14 84.3 161 36.6
A02p39670 Brassica napus HOM05D004036 ORTHO05D004576 1.3e-14 84.0 173 36.4
BraA02t08932Z Brassica rapa HOM05D004036 ORTHO05D004576 1.3e-14 84.0 173 36.4
SalBow8G4507 Salvia bowleyana HOM05D004036 ORTHO05D004576 1.3e-14 84.0 189 35.4
SalBow8G4816 Salvia bowleyana HOM05D004036 ORTHO05D004576 1.3e-14 84.0 189 35.4
Sp6g32160 Schrenkiella parvula HOM05D004036 ORTHO05D004576 1.3e-14 84.0 187 36.4
QL02p086217 Quercus lobata HOM05D004036 ORTHO05D004576 1.8e-14 83.6 165 36.4
MSTRG.14001 Avicennia marina HOM05D004036 ORTHO05D004576 2.3e-14 83.2 201 34.3
MELO3C003669.2 Cucumis melo HOM05D004036 ORTHO05D004576 2.3e-14 83.2 147 38.8
AT5G11440 Arabidopsis thaliana HOM05D004036 ORTHO05D004576 3.9e-14 82.4 157 36.9
Oeu031563.3 Olea europaea HOM05D004036 ORTHO05D004576 3.9e-14 82.4 235 31.1
Aqoxy7G01846 Aquilegia oxysepala HOM05D004036 ORTHO05D004576 5.1e-14 82.0 174 34.5
BcaC04g19226 Brassica carinata HOM05D004036 ORTHO05D004576 5.1e-14 82.0 175 36.6
BcaC03g13367 Brassica carinata HOM05D004036 ORTHO05D004576 6.7e-14 81.6 160 35.0
Carub.0006s0989 Capsella rubella HOM05D004036 ORTHO05D004576 8.7e-14 81.3 159 39.0
Cc08_g08300 Coffea canephora HOM05D004036 ORTHO05D004576 8.7e-14 81.3 206 35.9
BcaB01g06306 Brassica carinata HOM05D004036 ORTHO05D004576 1.5e-13 80.5 152 36.8
A10p26310 Brassica napus HOM05D004036 ORTHO05D004576 1.5e-13 80.5 176 37.5
C09p65420 Brassica napus HOM05D004036 ORTHO05D004576 1.9e-13 80.1 168 38.1
BolC9t59367H Brassica oleracea HOM05D004036 ORTHO05D004576 1.9e-13 80.1 168 38.1
SGA_v2.0_scaffold163G38098 Striga asiatica HOM05D004036 ORTHO05D004576 1.9e-13 80.1 198 35.9
BcaNung01927 Brassica carinata HOM05D004036 ORTHO05D004576 4.3e-13 79.0 182 31.9
MBI01_g10034_MAGBIO Magnolia biondii HOM05D004036 ORTHO05D004576 4.3e-13 79.0 204 35.8
GSVIVG01015440001 Vitis vinifera HOM05D004036 ORTHO05D004576 5.7e-13 78.6 87 55.2
Actinidia14638 Actinidia chinensis HOM05D004036 ORTHO05D004576 1.3e-12 77.4 147 38.8
Glyma.06G073400 Glycine max HOM05D004036 ORTHO05D004576 1.3e-12 77.4 168 36.3
AUR62032381 Chenopodium quinoa HOM05D004036 ORTHO05D004576 1.6e-12 77.0 182 34.6
DCAR_007682 Daucus carota HOM05D004036 ORTHO05D004576 3.7e-12 75.9 116 38.8
A02p01010 Brassica napus HOM05D004036 ORTHO05D004576 4.8e-12 75.5 175 34.3
BraA02t05082Z Brassica rapa HOM05D004036 ORTHO05D004576 4.8e-12 75.5 175 34.3
Hund25658 Selenicereus undatus HOM05D004036 ORTHO05D004576 4.8e-12 75.5 186 31.7
AUR62024838 Chenopodium quinoa HOM05D004036 ORTHO05D004576 6.3e-12 75.1 178 35.4
CiPaw.03G235800 Carya illinoinensis HOM05D004036 ORTHO05D004576 1.1e-11 74.3 205 33.2
A03p05000 Brassica napus HOM05D004036 ORTHO05D004576 2.4e-11 73.2 145 36.6
Ah.12g063370 Amaranthus hybridus HOM05D004036 ORTHO05D004576 3.1e-11 72.8 179 34.1
Sc23g0007020 Simmondsia chinensis HOM05D004036 ORTHO05D004576 4.1e-11 72.4 129 35.7
Gohir.D04G088301 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.2e-10 70.9 57 57.9
Gohir.D12G143101 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.2e-10 70.9 57 57.9
Nn2g11835 Nelumbo nucifera HOM05D004036 ORTHO05D004576 1.5e-10 70.5 152 34.2
Nn8g39276 Nelumbo nucifera HOM05D004036 ORTHO05D004576 2.0e-10 70.1 147 36.1
BraA10t44688Z Brassica rapa HOM05D004036 ORTHO05D004576 2.6e-10 69.7 176 35.8
HanXRQChr03g0077811 Helianthus annuus HOM05D004036 ORTHO05D004576 4.5e-10 68.9 90 40.0
BcaB01g05484 Brassica carinata HOM05D004036 ORTHO05D004576 7.7e-10 68.2 151 34.4
C03p05740 Brassica napus HOM05D004036 ORTHO05D004576 7.7e-10 68.2 151 34.4
BolC3t13087H Brassica oleracea HOM05D004036 ORTHO05D004576 7.7e-10 68.2 151 34.4
BcaB08g37059 Brassica carinata HOM05D004036 ORTHO05D004576 1.0e-09 67.8 168 34.5
C01p19860 Brassica napus HOM05D004036 ORTHO05D004576 1.0e-09 67.8 129 39.5
BolC1t01914H Brassica oleracea HOM05D004036 ORTHO05D004576 1.0e-09 67.8 129 39.5
BcaC09g50856 Brassica carinata HOM05D004036 ORTHO05D004576 1.3e-09 67.4 129 37.2
BcaB04g19786 Brassica carinata HOM05D004036 ORTHO05D004576 2.9e-09 66.2 166 33.7
C02p05040 Brassica napus HOM05D004036 ORTHO05D004576 5.0e-09 65.5 67 49.3
C07p03200 Brassica napus HOM05D004036 ORTHO05D004576 6.5e-09 65.1 129 36.4
BolC7t40715H Brassica oleracea HOM05D004036 ORTHO05D004576 8.5e-09 64.7 129 36.4
PSO063G5334 Papaver somniferum HOM05D004036 ORTHO05D004576 2.5e-08 63.2 198 30.3
TAR383G0233 Trochodendron aralioides HOM05D004036 ORTHO05D004576 4.2e-08 62.4 144 33.3
Phvul.009G097900 Phaseolus vulgaris HOM05D004036 ORTHO05D050263 7.2e-08 61.6 125 32.0
Oeu019418.1 Olea europaea HOM05D004036 ORTHO05D004576 1.2e-07 60.8 151 32.5
C09p06800 Brassica napus HOM05D004036 ORTHO05D004576 2.7e-07 59.7 89 37.1
BolC9t53601H Brassica oleracea HOM05D004036 ORTHO05D004576 2.7e-07 59.7 89 37.1
C04p56020 Brassica napus HOM05D000001 ORTHO05D004044 3.6e-07 59.3 188 30.3
BolC4t27135H Brassica oleracea HOM05D000001 ORTHO05D004044 3.6e-07 59.3 188 30.3
PSO782G2888 Papaver somniferum HOM05D004036 ORTHO05D004576 4.6e-07 58.9 198 29.8
A04p20320 Brassica napus HOM05D000001 ORTHO05D004044 6.1e-07 58.5 186 30.6
SGA_v2.0_scaffold169G38632 Striga asiatica HOM05D004036 ORTHO05D004576 7.9e-07 58.2 190 31.1
VMungo1309G1209 Vigna mungo HOM05D033454 ORTHO05D050263 7.9e-07 58.2 80 45.0
ATR0037G046 Amborella trichopoda HOM05D004036 ORTHO05D004576 2.3e-06 56.6 207 27.5
BraA04t17611Z Brassica rapa HOM05D000001 ORTHO05D004044 2.3e-06 56.6 186 30.1
BcaC02g08289 Brassica carinata HOM05D000001 ORTHO05D004044 3.9e-06 55.8 188 30.9
Sed0025074 Sechium edule HOM05D004036 ORTHO05D004576 3.9e-06 55.8 152 30.9
BraA08t33004Z Brassica rapa HOM05D004036 ORTHO05D004576 5.1e-06 55.5 45 57.8
MBI04_g26645_MAGBIO Magnolia biondii HOM05D004036 ORTHO05D004576 5.1e-06 55.5 51 54.9


User provided reference genes

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