Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0011855 Lotus japonicus HOM05D002737 ORTHO05D005828 8.5e-166 587.0 319 100.0
Lj5g0022679 Lotus japonicus HOM05D002737 ORTHO05D005828 3.8e-158 561.6 319 92.8
Glyma.10G288000 Glycine max HOM05D002737 ORTHO05D005828 2.8e-124 449.1 320 76.9
Glyma.20G101200 Glycine max HOM05D002737 ORTHO05D005828 2.2e-121 439.5 320 75.9
Medtr5g095010 Medicago truncatula HOM05D002737 ORTHO05D005828 1.6e-119 433.3 319 75.9
Ca_06383_v3 Cicer arietinum L. HOM05D001458 ORTHO05D007170 2.3e-118 429.5 317 74.1
Ca_29964_v3 Cicer arietinum L. HOM05D001458 ORTHO05D007170 2.3e-118 429.5 317 74.1
Psat2g008640 Pisum sativum HOM05D002737 ORTHO05D005828 8.7e-118 427.6 319 73.4
Lalb_Chr02g0143691 Lupinus albus HOM05D002737 ORTHO05D005828 3.6e-116 422.2 319 73.0
arahy.Tifrunner.gnm1.ann1.4SNC56 Arachis hypogaea HOM05D002737 ORTHO05D005828 3.5e-111 405.6 318 71.4
arahy.Tifrunner.gnm1.ann1.AGV1MP Arachis hypogaea HOM05D002737 ORTHO05D005828 4.6e-111 405.2 318 71.7
VMungo0720G0453 Vigna mungo HOM05D002737 ORTHO05D005828 2.3e-110 402.9 311 73.0
TPR.G14160 Trifolium pratense HOM05D002737 ORTHO05D005828 4.9e-97 358.6 320 66.2
Phvul.007G013400 Phaseolus vulgaris HOM05D002737 ORTHO05D005828 3.3e-93 345.9 319 63.9
Dinv17085 Davidia involucrata HOM05D002737 ORTHO05D005828 1.2e-79 300.8 323 56.3
Duzib150G0779 Durio zibethinus HOM05D002737 ORTHO05D005828 9.7e-77 291.2 321 54.8
Actinidia07271 Actinidia chinensis HOM05D002737 ORTHO05D005828 2.4e-75 286.6 320 54.1
Manes.01G182101 Manihot esculenta HOM05D002737 ORTHO05D005828 2.4e-75 286.6 324 54.9
CSS0011545 Camellia sinensis var. sinensis HOM05D002737 ORTHO05D005828 5.9e-74 282.0 319 54.5
TWI77G0520 Tripterygium wilfordii HOM05D002737 ORTHO05D005828 7.7e-74 281.6 324 54.9
FAN23G1354 Fragaria x ananassa HOM05D002737 ORTHO05D005828 1.0e-73 281.2 326 51.5
FAN19G0045 Fragaria x ananassa HOM05D002737 ORTHO05D005828 3.8e-73 279.3 318 52.2
FvH4_1g21730 Fragaria vesca HOM05D002737 ORTHO05D005828 8.5e-73 278.1 318 51.9
RcHm_v2.0_Chr2g0115601 Rosa chinensis HOM05D002737 ORTHO05D005828 1.1e-72 277.7 318 53.1
ClCG01G011660 Citrullus lanatus HOM05D002737 ORTHO05D005828 1.4e-72 277.3 332 51.5
Duzib168G0210 Durio zibethinus HOM05D002737 ORTHO05D005828 2.5e-72 276.6 322 54.7
CsaV3_2G009130 Cucumis sativus L. HOM05D002737 ORTHO05D005828 7.2e-72 275.0 335 52.5
FAN26G0444 Fragaria x ananassa HOM05D002737 ORTHO05D005828 7.2e-72 275.0 318 51.3
TWI79G0303 Tripterygium wilfordii HOM05D002737 ORTHO05D005828 1.6e-71 273.9 323 53.9
MELO3C003924.2 Cucumis melo HOM05D002737 ORTHO05D005828 2.7e-71 273.1 331 52.6
Prupe.6G178500 Prunus persica HOM05D002737 ORTHO05D005828 2.7e-71 273.1 334 51.8
Sed0023461 Sechium edule HOM05D002737 ORTHO05D005828 3.6e-71 272.7 328 50.9
Haze_00725 Corylus avellana HOM05D002737 ORTHO05D005828 7.9e-71 271.6 319 53.6
CSS0011939 Camellia sinensis var. sinensis HOM05D002737 ORTHO05D005828 1.0e-70 271.2 319 53.3
CiPaw.14G096400 Carya illinoinensis HOM05D002737 ORTHO05D005828 1.1e-69 267.7 317 53.0
Haze_00729 Corylus avellana HOM05D002737 ORTHO05D005828 1.1e-69 267.7 319 53.0
Rhsim13G0195300 Rhododendron simsii HOM05D002737 ORTHO05D005828 3.3e-69 266.2 335 50.1
vmacro03959 Vaccinium macrocarpon HOM05D002737 ORTHO05D005828 9.7e-69 264.6 322 50.9
Hma1.2p1_0793F.1_g218640 Hydrangea macrophylla HOM05D002737 ORTHO05D005828 2.2e-68 263.5 321 51.4
CAN.G745.41 Capsicum annuum HOM05D002737 ORTHO05D005828 6.3e-68 261.9 330 50.0
Haze_23327 Corylus avellana HOM05D002737 ORTHO05D005828 6.3e-68 261.9 319 53.0
CANSAT64G0180 Cannabis sativa HOM05D002737 ORTHO05D005828 1.8e-67 260.4 321 52.6
Sc12g0004790 Simmondsia chinensis HOM05D002737 ORTHO05D005828 2.6e-66 256.5 324 53.1
Potri.009G162500 Populus trichocarpa HOM05D002737 ORTHO05D005828 4.5e-66 255.8 326 50.9
PGSC0003DMG400019621 Solanum tuberosum HOM05D002737 ORTHO05D005828 4.5e-66 255.8 331 50.8
Solyc11g068870.2 Solanum lycopersicum HOM05D002737 ORTHO05D005828 7.7e-66 255.0 331 51.1
vmacro06935 Vaccinium macrocarpon HOM05D002737 ORTHO05D005828 1.7e-65 253.8 321 49.5
SGA_v2.0_scaffold7G03980 Striga asiatica HOM05D002737 ORTHO05D005828 2.9e-65 253.1 323 49.5
Nitab4.5_0001135g0150 Nicotiana tabacum HOM05D002737 ORTHO05D005828 5.0e-65 252.3 333 49.2
Sopen11g027560 Solanum pennellii HOM05D002737 ORTHO05D005828 5.0e-65 252.3 331 50.8
Lj7A589T65 Lonicera japonica HOM05D002737 ORTHO05D005828 1.1e-64 251.1 318 50.0
ECA248G3131 Erigeron canadensis HOM05D002737 ORTHO05D005828 1.9e-64 250.4 322 49.4
Cc01_g08470 Coffea canephora HOM05D002737 ORTHO05D005828 7.2e-64 248.4 319 51.4
Lsat_1_v5_gn_5_176321 Lactuca sativa HOM05D002737 ORTHO05D005828 2.1e-63 246.9 319 49.5
SGA_v2.0_scaffold114G31961 Striga asiatica HOM05D002737 ORTHO05D005828 2.7e-63 246.5 323 49.2
MSTRG.21020 Avicennia marina HOM05D002737 ORTHO05D005828 3.6e-63 246.1 325 47.1
TAR268G0004 Trochodendron aralioides HOM05D002737 ORTHO05D005828 3.6e-63 246.1 322 49.1
Thecc.09G275600 Theobroma cacao HOM05D002737 ORTHO05D005828 1.0e-62 244.6 324 50.9
Nitab4.5_0000893g0040 Nicotiana tabacum HOM05D002737 ORTHO05D005828 1.4e-62 244.2 333 49.2
EL10Ac7g17115 Beta vulgaris HOM05D002737 ORTHO05D005828 3.0e-62 243.0 319 50.8
Ah.10g032410 Amaranthus hybridus HOM05D002737 ORTHO05D005828 4.0e-62 242.7 357 45.7
Gohir.D07G115800 Gossypium hirsutum HOM05D002737 ORTHO05D005828 4.4e-61 239.2 330 48.5
Migut.D02412 Erythranthe guttata HOM05D002737 ORTHO05D005828 1.7e-60 237.3 323 47.7
Sabra15G0046000 Salix brachista HOM05D002737 ORTHO05D005828 2.2e-60 236.9 320 48.4
Sabra15G0048200 Salix brachista HOM05D002737 ORTHO05D005828 2.2e-60 236.9 320 48.4
MD15G1329700 Malus domestica HOM05D002737 ORTHO05D005828 2.8e-60 236.5 337 46.0
CDE06G1256 Ceratophyllum demersum HOM05D002737 ORTHO05D005828 3.7e-60 236.1 321 46.7
PGR119G1771 Punica granatum HOM05D002737 ORTHO05D005828 3.7e-60 236.1 326 47.9
Oeu049293.2 Olea europaea HOM05D002737 ORTHO05D005828 1.8e-59 233.8 372 43.5
Aa31LG5G8680 Aethionema arabicum HOM05D002737 ORTHO05D005828 5.3e-59 232.3 321 46.4
Gorai.001G124100 Gossypium raimondii HOM05D002737 ORTHO05D005828 1.2e-58 231.1 331 48.3
PSO063G0569 Papaver somniferum HOM05D002737 ORTHO05D005828 1.2e-58 231.1 321 46.4
GSVIVG01036054001 Vitis vinifera HOM05D002737 ORTHO05D005828 1.6e-58 230.7 204 59.8
Gohir.A07G112300 Gossypium hirsutum HOM05D002737 ORTHO05D005828 1.0e-57 228.0 330 47.3
Sabra15G0059900 Salix brachista HOM05D002737 ORTHO05D005828 1.0e-57 228.0 327 47.7
Eucgr.J00541 Eucalyptus grandis HOM05D002737 ORTHO05D005828 5.0e-57 225.7 292 49.7
Hund18792 Selenicereus undatus HOM05D002737 ORTHO05D005828 1.9e-56 223.8 344 46.5
Peaxi162Scf01324g00241 Petunia axillaris HOM05D002737 ORTHO05D005828 3.2e-56 223.0 336 46.4
Nn6g34744 Nelumbo nucifera HOM05D002737 ORTHO05D005828 4.2e-56 222.6 323 46.7
THA.LOC104826443 Tarenaya hassleriana HOM05D002737 ORTHO05D005828 7.2e-56 221.9 324 45.7
unitig_88.g27805 Utricularia gibba HOM05D002737 ORTHO05D002121 2.1e-55 220.3 318 46.2
AL4G21200 Arabidopsis lyrata HOM05D002737 ORTHO05D005828 2.7e-55 219.9 326 44.8
AT2G27285 Arabidopsis thaliana HOM05D002737 ORTHO05D005828 2.7e-55 219.9 324 44.8
ATR0807G231 Amborella trichopoda HOM05D002737 ORTHO05D005828 4.7e-55 219.2 323 46.1
Ciclev10028821m.g Citrus clementina HOM05D002737 ORTHO05D005828 1.0e-54 218.0 333 45.9
Aqoxy4G02622 Aquilegia oxysepala HOM05D002737 ORTHO05D005828 3.0e-54 216.5 321 46.1
Sp4g10090 Schrenkiella parvula HOM05D002737 ORTHO05D005828 4.0e-54 216.1 318 44.7
BcaB06g28137 Brassica carinata HOM05D002737 ORTHO05D005828 6.8e-54 215.3 326 42.6
CDE08G0429 Ceratophyllum demersum HOM05D002737 ORTHO05D003752 1.2e-53 214.5 197 57.9
QL07p000712 Quercus lobata HOM05D002737 ORTHO05D005828 1.5e-53 214.2 293 49.1
COL.COLO4_22657 Corchorus olitorius HOM05D002737 ORTHO05D005828 4.4e-53 212.6 320 46.2
DCAR_003399 Daucus carota HOM05D002737 ORTHO05D005828 1.7e-52 210.7 323 45.5
Peaxi162Scf00010g03312 Petunia axillaris HOM05D002737 ORTHO05D005828 2.8e-52 209.9 277 48.7
Peaxi162Scf01010g00216 Petunia axillaris HOM05D002737 ORTHO05D005828 3.7e-52 209.5 267 50.2
Carub.0004s0789 Capsella rubella HOM05D002737 ORTHO05D005828 4.8e-52 209.1 325 43.7
Thhalv10002052m.g Eutrema salsugineum HOM05D002737 ORTHO05D005828 2.2e-49 200.3 325 41.5
CARHR119810 Cardamine hirsuta HOM05D002737 ORTHO05D005828 5.0e-49 199.1 323 41.2
Carub.0004s0788 Capsella rubella HOM05D002737 ORTHO05D005828 6.5e-49 198.7 319 41.4
Peaxi162Scf00010g03410 Petunia axillaris HOM05D002737 ORTHO05D005828 1.2e-47 194.5 267 48.3
AL4G21190 Arabidopsis lyrata HOM05D002737 ORTHO05D005828 1.0e-46 191.4 318 41.2
arahy.Tifrunner.gnm1.ann1.0K86JE Arachis hypogaea HOM05D002737 ORTHO05D005828 6.8e-46 188.7 318 46.2
BcaC02g08257 Brassica carinata HOM05D002737 ORTHO05D005828 4.4e-45 186.0 197 52.8
C04p56640 Brassica napus HOM05D002737 ORTHO05D005828 4.4e-45 186.0 197 52.8
A04p20820 Brassica napus HOM05D002737 ORTHO05D005828 1.7e-44 184.1 206 50.5
BraA04t17655Z Brassica rapa HOM05D002737 ORTHO05D005828 1.7e-44 184.1 206 50.5
MBI01_g04520_MAGBIO Magnolia biondii HOM05D002737 ORTHO05D005828 1.7e-44 184.1 317 41.3
AagrBONN_evm.TU.Sc2ySwM_368.3225 Anthoceros agrestis HOM05D002737 ORTHO05D005828 2.8e-44 183.3 190 55.3
Sabra15G0053400 Salix brachista HOM05D002737 ORTHO05D005828 8.3e-44 181.8 320 42.5
HPP92_021234 Vanilla planifolia HOM05D002737 ORTHO05D005828 4.1e-43 179.5 324 39.2
SEGI_17121 Sequoiadendron giganteum HOM05D002737 ORTHO05D005828 7.0e-43 178.7 176 56.8
Lalb_Chr06g0164021 Lupinus albus HOM05D002737 ORTHO05D005828 9.2e-43 178.3 106 85.8
AT2G27280 Arabidopsis thaliana HOM05D002737 ORTHO05D005828 3.5e-42 176.4 318 40.3
Atru.chr3.3139 Acer truncatum HOM05D002737 ORTHO05D005828 1.3e-41 174.5 212 49.1
Sabra09G0126900 Salix brachista HOM05D002737 ORTHO05D005828 6.6e-41 172.2 275 42.9
Sabra15G0053700 Salix brachista HOM05D002737 ORTHO05D005828 2.8e-39 166.8 241 46.1
Pp3c10_11700 Physcomitrium patens HOM05D002737 ORTHO05D005828 4.7e-39 166.0 338 39.1
AL1G53070 Arabidopsis lyrata HOM05D002737 ORTHO05D005828 3.0e-38 163.3 202 49.0
BolC4t27191H Brassica oleracea HOM05D002737 ORTHO05D005828 1.5e-37 161.0 318 39.0
AT1G55928 Arabidopsis thaliana HOM05D002737 ORTHO05D005828 3.4e-37 159.8 212 47.2
Potri.004G201300 Populus trichocarpa HOM05D002737 ORTHO05D005828 3.7e-36 156.4 326 40.2
CiPaw.13G131400 Carya illinoinensis HOM05D002737 ORTHO05D005828 2.7e-34 150.2 243 45.3
QL07p000775 Quercus lobata HOM05D002737 ORTHO05D005828 3.5e-34 149.8 233 44.6
Mapoly0024s0122 Marchantia polymorpha HOM05D002737 ORTHO05D005828 8.6e-33 145.2 341 35.5
CBR_g45752 Chara braunii HOM05D002737 ORTHO05D005828 1.1e-32 144.8 199 45.2
Zm00001eb422940 Zea mays HOM05D002737 ORTHO05D005828 9.5e-32 141.7 262 41.2
CBR_g6328 Chara braunii HOM05D002737 ORTHO05D005828 1.6e-31 141.0 217 43.8
FAN28G1974 Fragaria x ananassa HOM05D002737 ORTHO05D005828 1.0e-30 138.3 105 65.7
Actinidia24240 Actinidia chinensis HOM05D002737 ORTHO05D005828 1.4e-30 137.9 100 67.0
Migut.D02400 Erythranthe guttata HOM05D002737 ORTHO05D005828 2.3e-30 137.1 322 35.1
Os04g0440000 Oryza sativa ssp. japonica HOM05D002737 ORTHO05D005828 4.0e-30 136.3 266 40.6
arahy.Tifrunner.gnm1.ann1.G9FM3T Arachis hypogaea HOM05D002737 ORTHO05D005828 2.6e-29 133.7 116 63.8
Cre17.g734000 Chlamydomonas reinhardtii HOM05D002737 ORTHO05D005828 5.8e-29 132.5 201 42.3
Actinidia24241 Actinidia chinensis HOM05D002737 ORTHO05D005828 3.7e-28 129.8 204 47.1
CARHR119800 Cardamine hirsuta HOM05D002737 ORTHO05D005828 6.4e-28 129.0 169 46.7
Gohir.D05G081600 Gossypium hirsutum HOM05D002737 ORTHO05D005828 4.1e-27 126.3 288 38.2
Lalb_Chr06g0164011 Lupinus albus HOM05D002737 ORTHO05D005828 3.5e-26 123.2 150 55.3
MD01G1023000 Malus domestica HOM05D002737 ORTHO05D005828 3.9e-25 119.8 101 61.4
QL07p000693 Quercus lobata HOM05D002737 ORTHO05D009499 1.1e-24 118.2 220 40.9
HanXRQChr03g0065531 Helianthus annuus HOM05D002737 ORTHO05D005828 5.6e-24 115.9 241 36.9
arahy.Tifrunner.gnm1.ann1.K04YXN Arachis hypogaea HOM05D002737 ORTHO05D023756 1.4e-22 111.3 93 62.4
Migut.D02413 Erythranthe guttata HOM05D002737 ORTHO05D005828 2.0e-21 107.5 223 38.1
CSS0037550 Camellia sinensis var. sinensis HOM05D002737 ORTHO05D005828 4.4e-21 106.3 96 58.3
AUR62037790 Chenopodium quinoa HOM05D002737 ORTHO05D005828 5.8e-21 105.9 217 40.1
AUR62018224 Chenopodium quinoa HOM05D002737 ORTHO05D005828 9.8e-21 105.1 220 40.5
MCO06G117 Micromonas commoda HOM05D002737 ORTHO05D005828 6.4e-20 102.4 338 31.4
Oeu025863.1 Olea europaea HOM05D002737 ORTHO05D005828 1.3e-17 94.7 148 43.9
SHI06201 Sapria himalayana HOM05D002737 ORTHO05D005828 1.5e-13 81.3 74 59.5
QL07p000753 Quercus lobata HOM05D002737 ORTHO05D005828 4.1e-11 73.2 57 61.4
arahy.Tifrunner.gnm1.ann1.1A1X10 Arachis hypogaea HOM05D002737 ORTHO05D005828 1.3e-09 68.2 44 70.5
Haze_00727 Corylus avellana HOM05D002737 ORTHO05D005828 1.2e-07 61.6 143 39.2
Cpa.g.sc23.121 Carica papaya HOM05D002737 ORTHO05D005828 4.0e-06 56.6 157 36.3


User provided reference genes

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