Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0011751 Lotus japonicus HOM05D002238 ORTHO05D007272 9.9e-247 856.3 419 100.0
Ca_12577_v3 Cicer arietinum L. HOM05D002238 ORTHO05D007272 5.4e-184 647.9 419 75.9
TPR.G36878 Trifolium pratense HOM05D002238 ORTHO05D001984 1.5e-181 639.8 412 75.2
Psat6g044800 Pisum sativum HOM05D002238 ORTHO05D001984 4.9e-177 624.8 417 72.7
VMungo1215G1712 Vigna mungo HOM05D002238 ORTHO05D007272 7.8e-175 617.5 420 71.0
Medtr1g031820 Medicago truncatula HOM05D002238 ORTHO05D001984 2.8e-172 609.0 388 76.5
Glyma.05G173000 Glycine max HOM05D002238 ORTHO05D007272 7.3e-165 584.3 382 72.3
Phvul.003G021200 Phaseolus vulgaris HOM05D002238 ORTHO05D007272 1.0e-163 580.5 405 68.6
Lalb_Chr25g0279781 Lupinus albus HOM05D002238 ORTHO05D007272 2.2e-153 546.2 419 64.7
arahy.Tifrunner.gnm1.ann1.U1RD55 Arachis hypogaea HOM05D002238 ORTHO05D007272 1.2e-151 540.4 402 67.7
arahy.Tifrunner.gnm1.ann1.H3G4DQ Arachis hypogaea HOM05D002238 ORTHO05D007272 1.2e-146 523.9 387 68.0
arahy.Tifrunner.gnm1.ann1.BAI8MS Arachis hypogaea HOM05D002238 ORTHO05D007272 7.6e-146 521.2 386 67.6
arahy.Tifrunner.gnm1.ann1.V2KEMD Arachis hypogaea HOM05D002238 ORTHO05D007272 1.7e-145 520.0 386 67.6
arahy.Tifrunner.gnm1.ann1.NZP3ZD Arachis hypogaea HOM05D002238 ORTHO05D007272 2.9e-145 519.2 386 67.9
arahy.Tifrunner.gnm1.ann1.TBR9XZ Arachis hypogaea HOM05D002238 ORTHO05D007272 2.4e-144 516.2 388 66.0
arahy.Tifrunner.gnm1.ann1.Z0G856 Arachis hypogaea HOM05D002238 ORTHO05D007272 4.1e-144 515.4 377 69.0
QL09p012798 Quercus lobata HOM05D002238 ORTHO05D007272 7.8e-135 484.6 416 59.4
Haze_00046 Corylus avellana HOM05D002238 ORTHO05D007272 3.6e-132 475.7 418 59.3
Prupe.1G474900 Prunus persica HOM05D002238 ORTHO05D007272 1.3e-129 467.2 424 56.1
MD08G1146200 Malus domestica HOM05D002238 ORTHO05D007272 1.4e-128 463.8 423 56.0
Gohir.1Z049673 Gossypium hirsutum HOM05D002238 ORTHO05D007272 3.5e-127 459.1 405 57.5
Duzib168G0728 Durio zibethinus HOM05D002238 ORTHO05D007272 6.0e-127 458.4 415 55.4
Gohir.D09G019000 Gossypium hirsutum HOM05D002238 ORTHO05D007272 1.0e-126 457.6 405 57.3
Gohir.A09G019700 Gossypium hirsutum HOM05D002238 ORTHO05D007272 2.3e-126 456.4 415 55.9
CANSAT54G2252 Cannabis sativa HOM05D002238 ORTHO05D007272 8.7e-126 454.5 425 54.8
Dinv30168 Davidia involucrata HOM05D002238 ORTHO05D007272 8.7e-126 454.5 417 57.3
CiPaw.05G262300 Carya illinoinensis HOM05D002238 ORTHO05D007272 3.3e-125 452.6 418 56.7
Potri.006G251400 Populus trichocarpa HOM05D002238 ORTHO05D007272 5.6e-125 451.8 419 56.3
FvH4_2g29530 Fragaria vesca HOM05D002238 ORTHO05D007272 1.6e-124 450.3 415 54.7
FAN24G3345 Fragaria x ananassa HOM05D002238 ORTHO05D007272 2.1e-124 449.9 407 55.8
COL.COLO4_00195 Corchorus olitorius HOM05D002238 ORTHO05D007272 2.8e-124 449.5 416 54.3
Gorai.006G022700 Gossypium raimondii HOM05D002238 ORTHO05D007272 2.8e-124 449.5 415 55.7
RcHm_v2.0_Chr6g0298391 Rosa chinensis HOM05D002238 ORTHO05D007272 2.8e-124 449.5 414 55.3
Ciclev10010344m.g Citrus clementina HOM05D002238 ORTHO05D007272 1.1e-123 447.6 422 55.0
FAN20G0928 Fragaria x ananassa HOM05D002238 ORTHO05D007272 3.4e-122 442.6 415 53.7
FAN27G0629 Fragaria x ananassa HOM05D002238 ORTHO05D007272 1.3e-121 440.7 415 53.5
Thecc.09G149800 Theobroma cacao HOM05D002238 ORTHO05D007272 3.8e-121 439.1 401 55.6
Nn2g11964 Nelumbo nucifera HOM05D002238 ORTHO05D007272 1.1e-120 437.6 416 51.4
TWI32G0967 Tripterygium wilfordii HOM05D002238 ORTHO05D007272 1.8e-118 430.3 404 54.0
Rhsim02G0195500 Rhododendron simsii HOM05D002238 ORTHO05D007272 2.3e-118 429.9 422 52.6
TAR625G0243 Trochodendron aralioides HOM05D002238 ORTHO05D007272 5.1e-118 428.7 399 53.6
Manes.16G120100 Manihot esculenta HOM05D002238 ORTHO05D007272 6.7e-118 428.3 396 55.8
Rhsim02G0198300 Rhododendron simsii HOM05D002238 ORTHO05D007272 2.5e-117 426.4 424 52.4
Actinidia13250 Actinidia chinensis HOM05D002238 ORTHO05D007272 4.3e-117 425.6 401 54.1
MBI04_g24206_MAGBIO Magnolia biondii HOM05D002238 ORTHO05D007272 3.7e-116 422.5 419 51.3
Rhsim09G0014000 Rhododendron simsii HOM05D002238 ORTHO05D007272 3.7e-116 422.5 377 55.2
ClCG05G017070 Citrullus lanatus HOM05D002238 ORTHO05D007272 3.1e-115 419.5 429 52.4
Oeu034743.2 Olea europaea HOM05D002238 ORTHO05D007272 3.1e-115 419.5 422 52.8
Cc08_g00970 Coffea canephora HOM05D002238 ORTHO05D007272 5.3e-115 418.7 415 51.8
Sc11g0007780 Simmondsia chinensis HOM05D002238 ORTHO05D007272 1.5e-114 417.2 400 52.8
PGR042G2797 Punica granatum HOM05D002238 ORTHO05D007272 2.6e-114 416.4 396 53.0
Cpa.g.sc533.2 Carica papaya HOM05D002238 ORTHO05D007272 1.7e-113 413.7 396 53.0
AUR62040710 Chenopodium quinoa HOM05D002238 ORTHO05D007272 1.7e-113 413.7 408 50.0
AUR62012126 Chenopodium quinoa HOM05D002238 ORTHO05D007272 2.2e-113 413.3 408 50.7
Sed0000756 Sechium edule HOM05D002238 ORTHO05D007272 2.2e-113 413.3 415 53.7
CSS0032500 Camellia sinensis var. sinensis HOM05D002238 ORTHO05D007272 3.8e-113 412.5 418 52.9
Aqoxy3G03159 Aquilegia oxysepala HOM05D002238 ORTHO05D007272 4.9e-113 412.1 415 48.9
Lj8C25T21 Lonicera japonica HOM05D002238 ORTHO05D007272 6.5e-113 411.8 417 52.5
Cfa016290 Carpinus fangiana HOM05D002238 ORTHO05D007272 1.4e-112 410.6 383 56.9
EL10Ac2g04715 Beta vulgaris HOM05D002238 ORTHO05D007272 2.5e-112 409.8 408 51.2
Nitab4.5_0004440g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 5.5e-112 408.7 377 52.5
Nitab4.5_0009247g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 4.6e-111 405.6 365 54.5
Eucgr.C01786 Eucalyptus grandis HOM05D002238 ORTHO05D007272 3.9e-110 402.5 382 53.1
Sabra06G0196500 Salix brachista HOM05D002238 ORTHO05D007272 1.9e-109 400.2 419 52.7
DCAR_006233 Daucus carota HOM05D002238 ORTHO05D007272 4.3e-109 399.1 369 54.5
CsaV3_3G046550 Cucumis sativus L. HOM05D002238 ORTHO05D007272 9.7e-109 397.9 413 51.6
Migut.A00055 Erythranthe guttata HOM05D002238 ORTHO05D007272 1.6e-108 397.1 388 50.3
Peaxi162Scf00327g00039 Petunia axillaris HOM05D002238 ORTHO05D007272 2.2e-108 396.7 371 52.0
MELO3C003684.2 Cucumis melo HOM05D002238 ORTHO05D007272 1.1e-107 394.4 413 50.8
PGSC0003DMG400020787 Solanum tuberosum HOM05D002238 ORTHO05D007272 2.4e-107 393.3 377 50.4
Ah.16g102520 Amaranthus hybridus HOM05D002238 ORTHO05D007272 5.3e-107 392.1 405 49.6
Peaxi162Scf00108g00063 Petunia axillaris HOM05D002238 ORTHO05D007272 5.0e-105 385.6 391 49.4
Sopen08g016790 Solanum pennellii HOM05D002238 ORTHO05D007272 5.0e-105 385.6 377 49.3
SGA_v2.0_scaffold20G09144 Striga asiatica HOM05D002238 ORTHO05D007272 9.3e-104 381.3 382 50.0
PSO349G0250 Papaver somniferum HOM05D002238 ORTHO05D007272 1.2e-103 380.9 377 50.4
AL6G37300 Arabidopsis lyrata HOM05D002238 ORTHO05D007272 6.1e-103 378.6 421 47.7
Solyc08g061450.3 Solanum lycopersicum HOM05D002238 ORTHO05D007272 6.1e-103 378.6 377 49.3
CARHR187880 Cardamine hirsuta HOM05D002238 ORTHO05D007272 1.3e-102 377.5 420 48.3
Aa31LG11G4600 Aethionema arabicum HOM05D002238 ORTHO05D007272 1.8e-102 377.1 422 47.4
Carub.0006s2336 Capsella rubella HOM05D002238 ORTHO05D007272 8.7e-102 374.8 420 47.6
AT5G25500 Arabidopsis thaliana HOM05D002238 ORTHO05D007272 5.7e-101 372.1 419 47.3
PSO017G3814 Papaver somniferum HOM05D002238 ORTHO05D007272 5.7e-101 372.1 380 50.0
Sp2g22030 Schrenkiella parvula HOM05D002238 ORTHO05D007272 3.7e-100 369.4 419 46.8
C07p42320 Brassica napus HOM05D002238 ORTHO05D007272 1.4e-99 367.5 384 50.3
BolC7t44761H Brassica oleracea HOM05D002238 ORTHO05D007272 2.4e-99 366.7 384 50.3
Thhalv10005310m.g Eutrema salsugineum HOM05D002238 ORTHO05D007272 6.9e-99 365.2 419 47.0
C02p59480 Brassica napus HOM05D002238 ORTHO05D007272 1.2e-98 364.4 405 47.9
BraA02t08935Z Brassica rapa HOM05D002238 ORTHO05D007272 2.0e-98 363.6 405 47.4
BolC2t12011H Brassica oleracea HOM05D002238 ORTHO05D007272 7.7e-98 361.7 380 49.5
A02p39700 Brassica napus HOM05D002238 ORTHO05D007272 1.0e-97 361.3 381 49.3
THA.LOC104810431 Tarenaya hassleriana HOM05D002238 ORTHO05D007272 1.7e-97 360.5 392 46.7
unitig_32.g11479 Utricularia gibba HOM05D002238 ORTHO05D007272 4.2e-96 355.9 382 47.1
Peaxi162Scf00002g00372 Petunia axillaris HOM05D002238 ORTHO05D003453 1.0e-94 351.3 352 50.9
GSVIVG01035523001 Vitis vinifera HOM05D002238 ORTHO05D007272 1.7e-92 344.0 415 45.5
SHI18572 Sapria himalayana HOM05D002238 ORTHO05D007272 1.4e-91 340.9 394 47.2
Peaxi162Scf00108g00056 Petunia axillaris HOM05D002238 ORTHO05D007272 4.5e-90 335.9 378 48.1
Glyma.09G122801 Glycine max HOM05D002238 ORTHO05D007272 3.2e-88 329.7 196 76.0
Lsat_1_v5_gn_5_105001 Lactuca sativa HOM05D002238 ORTHO05D007272 4.7e-87 325.9 404 44.3
QL01p053808 Quercus lobata HOM05D002238 ORTHO05D007272 4.7e-87 325.9 255 64.7
BraA06t26543Z Brassica rapa HOM05D002238 ORTHO05D007272 2.0e-85 320.5 301 54.2
HPP92_000893 Vanilla planifolia HOM05D002238 ORTHO05D007272 6.3e-84 315.5 376 44.1
Nitab4.5_0009119g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.6e-82 310.8 323 52.0
HanXRQChr13g0402681 Helianthus annuus HOM05D002238 ORTHO05D007272 1.2e-79 301.2 380 44.7
MD15G1119600 Malus domestica HOM05D002238 ORTHO05D007272 7.2e-72 275.4 217 63.1
Nitab4.5_0017994g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 7.2e-72 275.4 295 50.8
ATR1156G046 Amborella trichopoda HOM05D002238 ORTHO05D007272 1.5e-69 267.7 294 47.6
Atru.chr7.2387 Acer truncatum HOM05D002238 ORTHO05D007272 1.8e-67 260.8 174 71.8
Duzib187G0736 Durio zibethinus HOM05D002238 ORTHO05D007272 4.1e-67 259.6 208 61.5
QL10p065634 Quercus lobata HOM05D002238 ORTHO05D007272 5.5e-64 249.2 253 53.0
ECA233G3411 Erigeron canadensis HOM05D002238 ORTHO05D007272 6.8e-62 242.3 227 51.5
Zm00001eb090760 Zea mays HOM05D002238 ORTHO05D007272 6.3e-60 235.7 306 43.5
Peaxi162Scf00365g00022 Petunia axillaris HOM05D002238 ORTHO05D007272 1.1e-59 235.0 273 46.5
MD15G1122300 Malus domestica HOM05D002238 ORTHO05D007272 5.0e-57 226.1 273 45.4
Nitab4.5_0004440g0040 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.1e-56 224.9 168 63.1
BcaNung07110 Brassica carinata HOM05D002238 ORTHO05D007272 1.5e-56 224.6 178 60.7
Os11g0207300 Oryza sativa ssp. japonica HOM05D002238 ORTHO05D007272 7.3e-56 222.2 412 34.0
Aqoxy5G03332 Aquilegia oxysepala HOM05D002238 ORTHO05D007272 4.7e-55 219.5 284 40.1
SEGI_41370 Sequoiadendron giganteum HOM05D002238 ORTHO05D007272 8.9e-54 215.3 354 34.5
SalBow7G3196 Salvia bowleyana HOM05D002238 ORTHO05D007272 1.2e-45 188.3 203 47.3
SalBow6G2105 Salvia bowleyana HOM05D002238 ORTHO05D007272 3.7e-44 183.3 206 46.6
Peaxi162Scf00108g00048 Petunia axillaris HOM05D002238 ORTHO05D007272 1.3e-41 174.9 194 52.1
Nitab4.5_0013543g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 7.3e-40 169.1 136 62.5
Atru.chr7.2264 Acer truncatum HOM05D002238 ORTHO05D007272 2.3e-38 164.1 191 45.5
BcaB07g29994 Brassica carinata HOM05D002238 ORTHO05D007272 3.1e-38 163.7 178 50.0
Peaxi162Scf00015g02010 Petunia axillaris HOM05D002238 ORTHO05D004044 2.2e-36 157.5 193 46.1
QL10p065406 Quercus lobata HOM05D002238 ORTHO05D007272 2.9e-36 157.1 253 39.9
Nitab4.5_0011728g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 7.3e-32 142.5 323 30.3
MD15G1118500 Malus domestica HOM05D002238 ORTHO05D007272 1.2e-31 141.7 103 62.1
Nitab4.5_0011591g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 2.9e-28 130.6 111 61.3
Nitab4.5_0012587g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.1e-27 128.6 278 31.7
A06p36210 Brassica napus HOM05D002238 ORTHO05D007272 9.2e-27 125.6 162 44.4
Nitab4.5_0002007g0110 Nicotiana tabacum HOM05D002238 ORTHO05D007272 4.6e-26 123.2 112 58.0
Medtr3g118420 Medicago truncatula HOM05D002238 ORTHO05D026268 1.6e-23 114.8 93 61.3
Nitab4.5_0002007g0090 Nicotiana tabacum HOM05D002238 ORTHO05D007272 3.4e-21 107.1 99 57.6
Nitab4.5_0011728g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 3.8e-20 103.6 116 44.0
Nitab4.5_0012587g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.4e-19 101.7 116 43.1
Nitab4.5_0002007g0100 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.8e-14 84.7 87 49.4
Atru.chr7.2385 Acer truncatum HOM05D002238 ORTHO05D026268 1.9e-11 74.7 98 40.8
Nitab4.5_0011591g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 6.0e-10 69.7 71 47.9


User provided reference genes

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