Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0011569 Lotus japonicus HOM05D008136 ORTHO05D002052 3.5e-123 445.3 248 100.0
Lalb_Chr06g0172611 Lupinus albus HOM05D008136 ORTHO05D002052 8.8e-58 228.0 211 53.6
Glyma.10G080800 Glycine max HOM05D008136 ORTHO05D002052 3.4e-57 226.1 211 56.4
Phvul.007G268400 Phaseolus vulgaris HOM05D008136 ORTHO05D002052 4.0e-50 202.6 258 45.3
Ca_09051_v3 Cicer arietinum L. HOM05D008136 ORTHO05D002052 9.2e-47 191.4 212 46.7
Lj1g0025222 Lotus japonicus HOM05D008136 ORTHO05D002052 1.5e-44 184.1 211 44.5
Medtr7g106130 Medicago truncatula HOM05D008136 ORTHO05D002052 9.5e-44 181.4 209 43.5
Glyma.19G199000 Glycine max HOM05D008136 ORTHO05D002052 6.1e-43 178.7 208 44.2
Psat3g029080 Pisum sativum HOM05D008136 ORTHO05D002052 2.3e-42 176.8 211 44.5
Phvul.001G195100 Phaseolus vulgaris HOM05D008136 ORTHO05D002052 2.0e-41 173.7 244 41.4
VMungo1383G0618 Vigna mungo HOM05D008136 ORTHO05D002052 9.8e-41 171.4 209 43.1
VMungo0720G0515 Vigna mungo HOM05D008136 ORTHO05D002052 2.2e-40 170.2 181 49.7
TPR.G35558 Trifolium pratense HOM05D008136 ORTHO05D002052 6.6e-37 158.7 250 40.4
Lalb_Chr14g0368861 Lupinus albus HOM05D008136 ORTHO05D002052 2.1e-22 110.5 200 34.0
ClCG10G018400 Citrullus lanatus HOM05D008136 ORTHO05D002052 6.8e-18 95.5 220 28.2
Sed0011968 Sechium edule HOM05D008136 ORTHO05D002052 6.8e-18 95.5 219 28.3
CsaV3_3G037890 Cucumis sativus L. HOM05D008136 ORTHO05D002052 1.5e-17 94.4 219 29.2
Manes.08G032700 Manihot esculenta HOM05D008136 ORTHO05D002052 2.9e-16 90.1 222 27.0
Sp5g09840 Schrenkiella parvula HOM05D008136 ORTHO05D002052 1.1e-15 88.2 228 27.6
Thecc.05G103000 Theobroma cacao HOM05D008136 ORTHO05D002052 1.9e-15 87.4 257 29.2
Potri.006G204000 Populus trichocarpa HOM05D008136 ORTHO05D002052 2.4e-15 87.0 216 28.7
Thhalv10010982m.g Eutrema salsugineum HOM05D008136 ORTHO05D002052 3.2e-15 86.7 270 26.7
TWI53G0569 Tripterygium wilfordii HOM05D008136 ORTHO05D002052 7.1e-15 85.5 190 32.6
THA.LOC104825213 Tarenaya hassleriana HOM05D008136 ORTHO05D002052 9.3e-15 85.1 234 31.2
BcaC06g32916 Brassica carinata HOM05D008136 ORTHO05D002052 1.2e-14 84.7 217 31.8
Eucgr.A02595 Eucalyptus grandis HOM05D008136 ORTHO05D002052 1.6e-14 84.3 197 30.5
AUR62023990 Chenopodium quinoa HOM05D002687 ORTHO05D002052 2.7e-14 83.6 211 28.0
BcaC07g39611 Brassica carinata HOM05D008136 ORTHO05D002052 3.5e-14 83.2 228 27.6
C08p27700 Brassica napus HOM05D008136 ORTHO05D002052 3.5e-14 83.2 228 27.6
BolC8t50390H Brassica oleracea HOM05D008136 ORTHO05D002052 3.5e-14 83.2 228 27.6
MELO3C009533.2 Cucumis melo HOM05D008136 ORTHO05D002052 3.5e-14 83.2 263 33.1
A09p45540 Brassica napus HOM05D008136 ORTHO05D002052 4.6e-14 82.8 227 26.9
BraA09t40016Z Brassica rapa HOM05D008136 ORTHO05D002052 4.6e-14 82.8 227 26.9
AUR62031792 Chenopodium quinoa HOM05D002687 ORTHO05D002052 4.6e-14 82.8 211 27.0
AUR62001543 Chenopodium quinoa HOM05D002687 ORTHO05D002052 6.0e-14 82.4 206 27.7
AT3G52460 Arabidopsis thaliana HOM05D008136 ORTHO05D002052 7.8e-14 82.0 204 30.4
CARHR162230 Cardamine hirsuta HOM05D008136 ORTHO05D002052 7.8e-14 82.0 230 29.6
TAR623G0011 Trochodendron aralioides HOM05D002687 ORTHO05D002052 7.8e-14 82.0 215 26.0
COL.COLO4_29586 Corchorus olitorius HOM05D008136 ORTHO05D002052 1.0e-13 81.6 192 29.7
Manes.11G165500 Manihot esculenta HOM05D002687 ORTHO05D002052 1.0e-13 81.6 248 29.0
CiPaw.09G020400 Carya illinoinensis HOM05D008136 ORTHO05D002052 1.3e-13 81.3 216 26.4
THA.LOC104823630 Tarenaya hassleriana HOM05D008136 ORTHO05D002052 1.7e-13 80.9 234 25.6
Duzib093G0447 Durio zibethinus HOM05D008136 ORTHO05D002052 2.3e-13 80.5 205 29.8
Duzib106G1810 Durio zibethinus HOM05D008136 ORTHO05D002052 3.0e-13 80.1 208 29.3
TWI74G0144 Tripterygium wilfordii HOM05D008136 ORTHO05D002052 3.0e-13 80.1 194 28.4
Nn6g34716 Nelumbo nucifera HOM05D002687 ORTHO05D002052 3.9e-13 79.7 215 25.6
BcaB01g00366 Brassica carinata HOM05D008136 ORTHO05D002052 8.7e-13 78.6 203 28.1
BcaC06g33391 Brassica carinata HOM05D008136 ORTHO05D002052 1.5e-12 77.8 219 30.6
C07p46980 Brassica napus HOM05D008136 ORTHO05D002052 1.5e-12 77.8 219 30.6
BolC7t45215H Brassica oleracea HOM05D008136 ORTHO05D002052 1.5e-12 77.8 219 30.6
BraA03t13990Z Brassica rapa HOM05D008136 ORTHO05D002052 1.5e-12 77.8 200 31.5
AL5G33110 Arabidopsis lyrata HOM05D008136 ORTHO05D002052 2.5e-12 77.0 204 28.9
A03p48880 Brassica napus HOM05D008136 ORTHO05D002052 4.3e-12 76.3 200 31.5
Carub.0005s1885 Capsella rubella HOM05D008136 ORTHO05D002052 5.6e-12 75.9 199 29.1
PGSC0003DMG400019632 Solanum tuberosum HOM05D002687 ORTHO05D002052 7.3e-12 75.5 215 27.0
HanXRQChr14g0432161 Helianthus annuus HOM05D002687 ORTHO05D002052 9.6e-12 75.1 199 30.2
Potri.016G071200 Populus trichocarpa HOM05D038355 ORTHO05D002052 9.6e-12 75.1 199 26.6
TAR623G1724 Trochodendron aralioides HOM05D002687 ORTHO05D002052 1.3e-11 74.7 167 28.1
THA.LOC104826444 Tarenaya hassleriana HOM05D002687 ORTHO05D002052 2.1e-11 73.9 209 27.8
Haze_19713 Corylus avellana HOM05D008136 ORTHO05D002052 2.8e-11 73.6 220 25.5
MD03G1153500 Malus domestica HOM05D002687 ORTHO05D002052 3.6e-11 73.2 209 25.8
Ah.15g100060 Amaranthus hybridus HOM05D002687 ORTHO05D002052 6.2e-11 72.4 195 24.6
Dinv17088 Davidia involucrata HOM05D002687 ORTHO05D002052 8.1e-11 72.0 218 23.9
EL10Ac7g16313 Beta vulgaris HOM05D002687 ORTHO05D002052 1.1e-10 71.6 180 26.1
Cfa016687 Carpinus fangiana HOM05D008136 ORTHO05D002052 1.4e-10 71.2 197 27.9
Sabra06G0157200 Salix brachista HOM05D008136 ORTHO05D002052 2.4e-10 70.5 172 27.9
CiPaw.14G096100 Carya illinoinensis HOM05D002687 ORTHO05D002052 3.1e-10 70.1 248 23.8
FvH4_3g26690 Fragaria vesca HOM05D002687 ORTHO05D002052 3.1e-10 70.1 205 24.9
Glyma.13G313600 Glycine max HOM05D002687 ORTHO05D002052 4.0e-10 69.7 196 26.5
FAN11G1248 Fragaria x ananassa HOM05D002687 ORTHO05D002052 5.3e-10 69.3 218 23.9
Prupe.7G096900 Prunus persica HOM05D018155 ORTHO05D020655 5.3e-10 69.3 201 26.4
FAN21G1704 Fragaria x ananassa HOM05D002687 ORTHO05D002052 6.9e-10 68.9 219 25.6
CiPaw.13G131000 Carya illinoinensis HOM05D002687 ORTHO05D002052 9.0e-10 68.6 213 24.9
Migut.N02460 Erythranthe guttata HOM05D002687 ORTHO05D002052 9.0e-10 68.6 182 26.4
VMungo1080G0268 Vigna mungo HOM05D002687 ORTHO05D002052 9.0e-10 68.6 208 25.5
Potri.009G019800 Populus trichocarpa HOM05D002687 ORTHO05D002052 1.2e-09 68.2 246 28.0
Oeu048843.1 Olea europaea HOM05D002687 ORTHO05D002052 1.5e-09 67.8 182 25.8
unitig_8.g3658 Utricularia gibba HOM05D002687 ORTHO05D002052 2.0e-09 67.4 222 25.2
Cfa009948 Carpinus fangiana HOM05D002687 ORTHO05D002052 3.4e-09 66.6 195 24.6
Lalb_Chr25g0288041 Lupinus albus HOM05D008136 ORTHO05D002052 4.4e-09 66.2 180 27.2
Nitab4.5_0000158g0010 Nicotiana tabacum HOM05D002687 ORTHO05D002052 4.4e-09 66.2 209 26.3
Potri.001G218300 Populus trichocarpa HOM05D002687 ORTHO05D002052 4.4e-09 66.2 221 22.6
CANSAT54G2775 Cannabis sativa HOM05D002687 ORTHO05D002052 5.8e-09 65.9 211 25.6
Phvul.005G120800 Phaseolus vulgaris HOM05D002687 ORTHO05D002052 5.8e-09 65.9 213 25.8
Lsat_1_v5_gn_2_38441 Lactuca sativa HOM05D002687 ORTHO05D002052 7.6e-09 65.5 187 26.2
MD00G1129000 Malus domestica HOM05D002687 ORTHO05D002052 7.6e-09 65.5 198 24.2
Nitab4.5_0000893g0110 Nicotiana tabacum HOM05D002687 ORTHO05D002052 7.6e-09 65.5 190 25.8
TAR636G0437 Trochodendron aralioides HOM05D002687 ORTHO05D002052 7.6e-09 65.5 206 25.2
TAR636G3204 Trochodendron aralioides HOM05D002687 ORTHO05D002052 7.6e-09 65.5 206 25.2
QL07p036916 Quercus lobata HOM05D008136 ORTHO05D002052 9.9e-09 65.1 256 24.2
Sabra16G0125800 Salix brachista HOM05D002687 ORTHO05D002052 9.9e-09 65.1 255 21.2
SGA_v2.0_scaffold100G29631 Striga asiatica HOM05D002687 ORTHO05D002052 9.9e-09 65.1 258 25.2
SGA_v2.0_scaffold637G53306 Striga asiatica HOM05D002687 ORTHO05D002052 1.3e-08 64.7 212 25.9
BcaC02g10865 Brassica carinata HOM05D002687 ORTHO05D002052 1.7e-08 64.3 205 24.4
C04p24310 Brassica napus HOM05D002687 ORTHO05D002052 1.7e-08 64.3 205 24.4
MELO3C014517.2 Cucumis melo HOM05D002687 ORTHO05D002052 1.7e-08 64.3 249 24.1
BcaC02g08259 Brassica carinata HOM05D002687 ORTHO05D002052 2.2e-08 63.9 233 24.5
C04p56620 Brassica napus HOM05D002687 ORTHO05D002052 2.2e-08 63.9 233 24.5
BolC4t27189H Brassica oleracea HOM05D002687 ORTHO05D002052 2.2e-08 63.9 233 24.5
Carub.0001s0701 Capsella rubella HOM05D002687 ORTHO05D002052 2.2e-08 63.9 209 24.9
CiPaw.10G094600 Carya illinoinensis HOM05D002687 ORTHO05D002052 2.2e-08 63.9 214 26.2
CsaV3_6G038540 Cucumis sativus L. HOM05D002687 ORTHO05D002052 2.9e-08 63.5 249 24.1
Prupe.6G142400 Prunus persica HOM05D002687 ORTHO05D002052 2.9e-08 63.5 194 24.2
RcHm_v2.0_Chr5g0048091 Rosa chinensis HOM05D002687 ORTHO05D002052 2.9e-08 63.5 190 23.7
SalBow3G2018 Salvia bowleyana HOM05D002687 ORTHO05D002052 2.9e-08 63.5 182 25.3
FAN16G1005 Fragaria x ananassa HOM05D002687 ORTHO05D002052 3.8e-08 63.2 190 23.7
Aqoxy1G00685 Aquilegia oxysepala HOM05D002687 ORTHO05D002052 4.9e-08 62.8 208 24.5
BraA04t17653Z Brassica rapa HOM05D002687 ORTHO05D002052 4.9e-08 62.8 233 24.5
Cc01_g08570 Coffea canephora HOM05D002687 ORTHO05D002052 4.9e-08 62.8 213 28.2
MSTRG.17685 Avicennia marina HOM05D002687 ORTHO05D002052 6.4e-08 62.4 255 25.1
ECA238G0184 Erigeron canadensis HOM05D002687 ORTHO05D002052 6.4e-08 62.4 193 26.4
Rhsim01G0201900 Rhododendron simsii HOM05D002687 ORTHO05D002052 6.4e-08 62.4 176 25.6
TAR633G0472 Trochodendron aralioides HOM05D002687 ORTHO05D002052 6.4e-08 62.4 200 23.0
BolC4t23929H Brassica oleracea HOM05D002687 ORTHO05D002052 8.4e-08 62.0 191 24.6
Haze_23313 Corylus avellana HOM05D002687 ORTHO05D002052 1.1e-07 61.6 251 21.9
CiPaw.09G020300 Carya illinoinensis HOM05D002687 ORTHO05D002052 1.4e-07 61.2 195 25.6
A04p20800 Brassica napus HOM05D002687 ORTHO05D002052 1.9e-07 60.8 224 24.6
CiPaw.10G016800 Carya illinoinensis HOM05D008136 ORTHO05D002052 4.2e-07 59.7 180 25.0
MELO3C025576.2 Cucumis melo HOM05D002687 ORTHO05D034712 7.1e-07 58.9 207 25.1
Solyc11g068893.1 Solanum lycopersicum HOM05D002687 ORTHO05D002052 9.3e-07 58.5 163 25.2
MD14G1037500 Malus domestica HOM05D002687 ORTHO05D002052 1.2e-06 58.2 212 26.9
ClCG02G022410 Citrullus lanatus HOM05D002687 ORTHO05D002052 1.6e-06 57.8 194 25.3
PGSC0003DMG400016421 Solanum tuberosum HOM05D012176 ORTHO05D014468 1.6e-06 57.8 191 24.1
unitig_27.g25123 Utricularia gibba HOM05D000738 ORTHO05D000675 2.7e-06 57.0 189 23.3
CDE04G2921 Ceratophyllum demersum HOM05D002687 ORTHO05D002052 3.5e-06 56.6 193 26.4
Oeu035584.1 Olea europaea HOM05D002687 ORTHO05D002052 3.5e-06 56.6 227 24.7
Atru.chr3.3136 Acer truncatum HOM05D002687 ORTHO05D002052 4.6e-06 56.2 190 20.5


User provided reference genes

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