Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0011528 Lotus japonicus HOM05D006793 ORTHO05D003476 8.9e-239 830.1 491 100.0
Phvul.007G141300 Phaseolus vulgaris HOM05D006793 ORTHO05D003476 7.8e-118 428.3 510 55.1
Glyma.20G190600 Glycine max HOM05D006793 ORTHO05D003476 2.3e-117 426.8 512 63.7
Lalb_Chr02g0151171 Lupinus albus HOM05D006793 ORTHO05D003476 8.6e-117 424.9 518 60.6
VMungo0720G1705 Vigna mungo HOM05D006793 ORTHO05D003476 8.6e-117 424.9 514 63.0
Lalb_Chr21g0313091 Lupinus albus HOM05D006793 ORTHO05D003476 3.4e-113 412.9 515 58.6
Glyma.10G199900 Glycine max HOM05D006793 ORTHO05D003476 1.7e-104 384.0 521 59.3
Medtr1g090853 Medicago truncatula HOM05D006793 ORTHO05D003476 2.5e-100 370.2 554 55.4
arahy.Tifrunner.gnm1.ann1.U5ZVAW Arachis hypogaea HOM05D006793 ORTHO05D003476 3.6e-99 366.3 506 59.3
arahy.Tifrunner.gnm1.ann1.BT04C1 Arachis hypogaea HOM05D006793 ORTHO05D003476 1.4e-98 364.4 504 58.3
TPR.G37771 Trifolium pratense HOM05D006793 ORTHO05D003476 2.4e-98 363.6 554 54.2
Psat6g174040 Pisum sativum HOM05D006793 ORTHO05D003476 1.3e-75 288.1 662 44.1
FAN06G1743 Fragaria x ananassa HOM05D006793 ORTHO05D003476 9.1e-66 255.4 514 37.4
FvH4_7g06800 Fragaria vesca HOM05D006793 ORTHO05D003476 1.2e-65 255.0 514 37.4
MD02G1241700 Malus domestica HOM05D006793 ORTHO05D003476 3.4e-65 253.4 514 37.9
Gohir.D01G118500 Gossypium hirsutum HOM05D006793 ORTHO05D003476 5.9e-65 252.7 512 36.9
FAN10G1411 Fragaria x ananassa HOM05D006793 ORTHO05D003476 1.4e-63 248.1 511 37.2
Gorai.002G144500 Gossypium raimondii HOM05D006793 ORTHO05D003476 1.4e-63 248.1 512 36.5
FAN01G0293 Fragaria x ananassa HOM05D006793 ORTHO05D003476 5.5e-63 246.1 520 37.3
Gohir.A01G128900 Gossypium hirsutum HOM05D006793 ORTHO05D003476 5.5e-63 246.1 512 36.5
RcHm_v2.0_Chr1g0336511 Rosa chinensis HOM05D006793 ORTHO05D003476 9.4e-63 245.4 529 36.3
Ca_10462_v3 Cicer arietinum L. HOM05D001977 ORTHO05D002246 4.7e-62 243.0 491 38.7
Duzib114G0110 Durio zibethinus HOM05D006793 ORTHO05D003476 6.7e-61 239.2 513 36.6
Cfa001770 Carpinus fangiana HOM05D006793 ORTHO05D003476 3.3e-60 236.9 515 36.5
Thecc.10G090800 Theobroma cacao HOM05D006793 ORTHO05D003476 4.8e-59 233.0 523 35.8
Prupe.2G095200 Prunus persica HOM05D006793 ORTHO05D003476 2.4e-58 230.7 509 36.1
TAR636G1084 Trochodendron aralioides HOM05D006793 ORTHO05D003476 5.3e-58 229.6 509 35.4
QL08p052921 Quercus lobata HOM05D006793 ORTHO05D003476 4.5e-57 226.5 501 37.9
GSVIVG01005025001 Vitis vinifera HOM05D006793 ORTHO05D003476 3.2e-55 220.3 512 33.4
COL.COLO4_32868 Corchorus olitorius HOM05D006793 ORTHO05D003476 4.2e-55 219.9 548 35.0
CANSAT56G4476 Cannabis sativa HOM05D006793 ORTHO05D003476 5.5e-55 219.5 536 35.6
Atru.chr11.746 Acer truncatum HOM05D006793 ORTHO05D003476 3.0e-53 213.8 544 32.2
Duzib128G0427 Durio zibethinus HOM05D006793 ORTHO05D003476 4.0e-53 213.4 520 34.6
MD07G1075000 Malus domestica HOM05D006793 ORTHO05D003476 5.2e-53 213.0 478 36.0
TAR476G0002 Trochodendron aralioides HOM05D006793 ORTHO05D003476 5.2e-53 213.0 529 35.0
Sed0017585 Sechium edule HOM05D006793 ORTHO05D003476 1.1e-52 211.8 512 35.7
TAR633G2614 Trochodendron aralioides HOM05D006793 ORTHO05D009315 1.1e-52 211.8 529 34.8
Manes.10G053400 Manihot esculenta HOM05D006793 ORTHO05D003476 5.7e-52 209.5 515 33.8
Sabra10G0179700 Salix brachista HOM05D006793 ORTHO05D003476 5.7e-52 209.5 525 34.1
Eucgr.G02731 Eucalyptus grandis HOM05D006793 ORTHO05D003476 9.7e-52 208.8 516 33.3
Rhsim03G0110800 Rhododendron simsii HOM05D006793 ORTHO05D003476 2.8e-51 207.2 528 33.5
Sabra08G0019600 Salix brachista HOM05D006793 ORTHO05D003476 4.8e-51 206.5 515 33.0
CiPaw.01G264600 Carya illinoinensis HOM05D006793 ORTHO05D003476 8.2e-51 205.7 511 34.8
CsaV3_2G032770 Cucumis sativus L. HOM05D006793 ORTHO05D003476 1.8e-50 204.5 504 35.1
Manes.07G093300 Manihot esculenta HOM05D006793 ORTHO05D003476 4.1e-50 203.4 505 32.7
PGR142G3005 Punica granatum HOM05D006793 ORTHO05D003476 4.1e-50 203.4 522 32.6
Ciclev10031613m.g Citrus clementina HOM05D006793 ORTHO05D003476 2.0e-49 201.1 508 32.3
Potri.008G029500 Populus trichocarpa HOM05D006793 ORTHO05D003476 2.0e-49 201.1 521 33.2
Hma1.2p1_0454F.1_g156300 Hydrangea macrophylla HOM05D006793 ORTHO05D003476 5.9e-49 199.5 511 35.4
Aqoxy2G01557 Aquilegia oxysepala HOM05D006793 ORTHO05D003476 2.2e-48 197.6 512 32.4
Potri.010G231900 Populus trichocarpa HOM05D006793 ORTHO05D003476 2.9e-48 197.2 565 32.4
Dinv31270 Davidia involucrata HOM05D006793 ORTHO05D003476 4.2e-47 193.4 513 33.5
MELO3C019853.2 Cucumis melo HOM05D006793 ORTHO05D003476 1.2e-46 191.8 501 34.9
Haze_16786 Corylus avellana HOM05D006793 ORTHO05D003476 1.6e-46 191.4 482 36.1
FAN03G3430 Fragaria x ananassa HOM05D006793 ORTHO05D003476 2.1e-46 191.0 473 34.0
Actinidia06714 Actinidia chinensis HOM05D006793 ORTHO05D003476 4.0e-45 186.8 503 31.8
PGSC0003DMG400027329 Solanum tuberosum HOM05D006793 ORTHO05D003476 3.4e-44 183.7 550 29.5
ClCG08G007950 Citrullus lanatus HOM05D006793 ORTHO05D003476 1.3e-43 181.8 171 59.1
PSO339G4934 Papaver somniferum HOM05D006793 ORTHO05D003476 1.7e-43 181.4 495 32.7
Dinv20859 Davidia involucrata HOM05D006793 ORTHO05D003476 1.4e-42 178.3 171 59.1
Nn6g35167 Nelumbo nucifera HOM05D006793 ORTHO05D003476 3.1e-42 177.2 505 30.9
Sopen11g003710 Solanum pennellii HOM05D006793 ORTHO05D003476 1.6e-41 174.9 537 29.1
PSO801G0244 Papaver somniferum HOM05D006793 ORTHO05D003476 3.5e-41 173.7 500 32.2
SalBow4G0791 Salvia bowleyana HOM05D006793 ORTHO05D003476 3.5e-41 173.7 501 30.3
Nn2g13905 Nelumbo nucifera HOM05D006793 ORTHO05D003476 4.5e-41 173.3 508 31.3
Solyc11g007850.2 Solanum lycopersicum HOM05D006793 ORTHO05D003476 7.7e-41 172.6 533 30.2
Migut.F01893 Erythranthe guttata HOM05D006793 ORTHO05D003476 1.7e-40 171.4 496 30.8
Sc20g0001440 Simmondsia chinensis HOM05D006793 ORTHO05D003476 2.2e-40 171.0 151 60.9
Nitab4.5_0006383g0010 Nicotiana tabacum HOM05D006793 ORTHO05D003476 1.5e-39 168.3 536 29.7
Peaxi162Scf00321g00037 Petunia axillaris HOM05D006793 ORTHO05D003476 2.5e-39 167.5 528 31.2
MSTRG.27506 Avicennia marina HOM05D006793 ORTHO05D003476 1.2e-38 165.2 535 29.3
Cc02_g10490 Coffea canephora HOM05D006793 ORTHO05D003476 3.6e-38 163.7 189 54.0
MSTRG.404 Avicennia marina HOM05D006793 ORTHO05D003476 1.4e-37 161.8 537 30.9
EL10Ac8g19653 Beta vulgaris HOM05D006793 ORTHO05D003476 5.2e-37 159.8 535 29.0
AUR62002713 Chenopodium quinoa HOM05D006793 ORTHO05D003476 8.8e-37 159.1 527 30.4
AUR62030173 Chenopodium quinoa HOM05D006793 ORTHO05D003476 1.2e-36 158.7 532 29.3
Nitab4.5_0000593g0350 Nicotiana tabacum HOM05D006793 ORTHO05D003476 5.7e-36 156.4 534 29.4
Oeu060293.1 Olea europaea HOM05D006793 ORTHO05D003476 1.3e-35 155.2 533 31.3
ECA233G3433 Erigeron canadensis HOM05D006793 ORTHO05D003476 9.2e-34 149.1 501 31.3
SGA_v2.0_scaffold62G21362 Striga asiatica HOM05D006793 ORTHO05D003476 9.2e-34 149.1 114 65.8
TWI38G2135 Tripterygium wilfordii HOM05D006793 ORTHO05D003476 9.2e-34 149.1 567 38.6
AT3G52170 Arabidopsis thaliana HOM05D006793 ORTHO05D003476 3.5e-33 147.1 518 28.6
Cpa.g.sc128.73 Carica papaya HOM05D006793 ORTHO05D003476 4.5e-33 146.7 107 70.1
AL5G32750 Arabidopsis lyrata HOM05D006793 ORTHO05D003476 7.7e-33 146.0 519 27.9
Lsat_1_v5_gn_8_22741 Lactuca sativa HOM05D006793 ORTHO05D003476 5.0e-32 143.3 185 50.3
MBI17_g07069_MAGBIO Magnolia biondii HOM05D006793 ORTHO05D003476 1.5e-31 141.7 121 62.8
DCAR_019058 Daucus carota HOM05D006793 ORTHO05D003476 7.3e-31 139.4 504 28.6
Aa31LG10G7260 Aethionema arabicum HOM05D000145 ORTHO05D003476 1.2e-30 138.7 513 29.4
Carub.0005s1853 Capsella rubella HOM05D006793 ORTHO05D003476 2.8e-30 137.5 523 27.3
Sp5g10100 Schrenkiella parvula HOM05D006793 ORTHO05D003476 5.2e-29 133.3 549 28.8
BcaC02g09274 Brassica carinata HOM05D006793 ORTHO05D003476 1.2e-28 132.1 504 27.2
CARHR161930 Cardamine hirsuta HOM05D006793 ORTHO05D003476 3.4e-28 130.6 511 29.2
THA.LOC104824314 Tarenaya hassleriana HOM05D006793 ORTHO05D003476 4.4e-28 130.2 547 29.3
C04p40750 Brassica napus HOM05D000992 ORTHO05D006704 2.9e-27 127.5 524 26.9
BolC4t25659H Brassica oleracea HOM05D000992 ORTHO05D006704 2.9e-27 127.5 524 26.9
Thhalv10010306m.g Eutrema salsugineum HOM05D006793 ORTHO05D003476 6.4e-27 126.3 522 27.8
ECA238G3554 Erigeron canadensis HOM05D006793 ORTHO05D003476 1.8e-26 124.8 101 65.3
Lsat_1_v5_gn_2_103100 Lactuca sativa HOM05D006793 ORTHO05D003476 7.0e-26 122.9 117 58.1
Sed0009649 Sechium edule HOM05D006793 ORTHO05D003476 1.6e-25 121.7 109 61.5
A03p48750 Brassica napus HOM05D006793 ORTHO05D003476 1.3e-24 118.6 505 28.3
BraA03t13975Z Brassica rapa HOM05D006793 ORTHO05D003476 2.3e-24 117.9 502 28.1
A04p07200 Brassica napus HOM05D006793 ORTHO05D003476 7.3e-23 112.8 513 26.9
HanXRQChr14g0456191 Helianthus annuus HOM05D006793 ORTHO05D003476 3.6e-22 110.5 128 46.9
HPP92_027826 Vanilla planifolia HOM05D006793 ORTHO05D003476 3.6e-22 110.5 89 65.2
BraA04t16415Z Brassica rapa HOM05D000992 ORTHO05D006704 8.0e-22 109.4 513 26.9
vmacro07208 Vaccinium macrocarpon HOM05D000992 ORTHO05D006704 1.8e-21 108.2 353 29.5
CDE03G0520 Ceratophyllum demersum HOM05D048142 ORTHO05D003476 2.3e-21 107.8 534 25.8
Zm00001eb137780 Zea mays HOM05D006793 ORTHO05D003476 4.4e-20 103.6 155 40.6
MD02G1237300 Malus domestica HOM05D006793 ORTHO05D003476 5.8e-20 103.2 503 25.4
Zm00001eb410830 Zea mays HOM05D006793 ORTHO05D003476 6.4e-19 99.8 149 38.9
ATR1126G067 Amborella trichopoda HOM05D006793 ORTHO05D003476 7.0e-18 96.3 112 46.4
CSS0025253 Camellia sinensis var. sinensis HOM05D006793 ORTHO05D000001 9.2e-18 95.9 91 53.8
HanXRQChr12g0368421 Helianthus annuus HOM05D006793 ORTHO05D003476 9.2e-18 95.9 124 44.4
Os12g0528000 Oryza sativa ssp. japonica HOM05D006793 ORTHO05D003476 1.2e-17 95.5 163 36.8
unitig_899.g14485 Utricularia gibba HOM05D006793 ORTHO05D003476 1.9e-15 88.2 69 63.8
Dinv20860 Davidia involucrata HOM05D006793 ORTHO05D003476 2.6e-12 77.8 96 46.9
CSS0050149 Camellia sinensis var. sinensis HOM05D006793 ORTHO05D003476 5.8e-12 76.6 256 29.7
SEGI_29881 Sequoiadendron giganteum HOM05D006793 ORTHO05D003476 1.1e-10 72.4 71 50.7
Medtr6g069010 Medicago truncatula HOM05D008057 ORTHO05D003476 1.9e-10 71.6 105 38.1
Hma1.2p1_0016F.1_g010880 Hydrangea macrophylla HOM05D008057 ORTHO05D003476 1.2e-09 68.9 131 35.1
CARHR272010 Cardamine hirsuta HOM05D012436 ORTHO05D003476 1.6e-09 68.6 170 28.8
Psat1g117960 Pisum sativum HOM05D008057 ORTHO05D003476 4.6e-09 67.0 78 43.6
Glyma.16G210200 Glycine max HOM05D008057 ORTHO05D003476 1.0e-08 65.9 94 39.4
CsaV3_1G033920 Cucumis sativus L. HOM05D008057 ORTHO05D003476 3.9e-08 63.9 133 36.8
Oeu046660.1 Olea europaea HOM05D006793 ORTHO05D003476 3.9e-08 63.9 199 32.2
TPR.G31356 Trifolium pratense HOM05D008057 ORTHO05D003476 3.9e-08 63.9 61 49.2
Lj2g0026608 Lotus japonicus HOM05D008057 ORTHO05D003476 5.1e-08 63.5 80 42.5
THA.LOC104805620 Tarenaya hassleriana HOM05D012436 ORTHO05D003476 5.1e-08 63.5 147 33.3
Cc00_g01550 Coffea canephora HOM05D008057 ORTHO05D003476 6.6e-08 63.2 71 47.9
MSTRG.22259 Avicennia marina HOM05D008057 ORTHO05D003476 1.1e-07 62.4 158 29.7
Lalb_Chr14g0370111 Lupinus albus HOM05D008057 ORTHO05D003476 1.1e-07 62.4 66 45.5
Cpa.g.sc124.3 Carica papaya HOM05D008057 ORTHO05D003476 1.5e-07 62.0 77 41.6
Glyma.09G160700 Glycine max HOM05D008057 ORTHO05D003476 1.5e-07 62.0 77 40.3
Cfa017812 Carpinus fangiana HOM05D008057 ORTHO05D003476 1.9e-07 61.6 58 46.6
Nitab4.5_0009307g0060 Nicotiana tabacum HOM05D008057 ORTHO05D003476 1.9e-07 61.6 73 39.7
Peaxi162Scf00171g00028 Petunia axillaris HOM05D008057 ORTHO05D003476 1.9e-07 61.6 171 29.2
QL10p035701 Quercus lobata HOM05D008057 ORTHO05D003476 1.9e-07 61.6 79 41.8
CiPaw.16G075800 Carya illinoinensis HOM05D008057 ORTHO05D003476 2.5e-07 61.2 67 43.3
MBI03_g11904_MAGBIO Magnolia biondii HOM05D008057 ORTHO05D003476 2.5e-07 61.2 82 41.5
AT5G58210 Arabidopsis thaliana HOM05D012436 ORTHO05D003476 3.3e-07 60.8 77 40.3
MELO3C020667.2 Cucumis melo HOM05D008057 ORTHO05D003476 9.5e-07 59.3 58 50.0
ClCG03G001720 Citrullus lanatus HOM05D008057 ORTHO05D003476 1.2e-06 58.9 76 44.7
Gohir.A03G090600 Gossypium hirsutum HOM05D008057 ORTHO05D003476 1.6e-06 58.5 73 39.7
Atru.chr9.28 Acer truncatum HOM05D008057 ORTHO05D003476 2.1e-06 58.2 77 37.7
C03p14510 Brassica napus HOM05D012436 ORTHO05D003476 2.1e-06 58.2 140 26.4
Nitab4.5_0008182g0020 Nicotiana tabacum HOM05D008057 ORTHO05D003476 2.1e-06 58.2 73 38.4
Sp6g19870 Schrenkiella parvula HOM05D012436 ORTHO05D003476 3.6e-06 57.4 54 48.1
Sed0004109 Sechium edule HOM05D008057 ORTHO05D003476 3.6e-06 57.4 110 32.7
AL8G34310 Arabidopsis lyrata HOM05D012436 ORTHO05D003476 4.7e-06 57.0 50 50.0
BcaB01g04549 Brassica carinata HOM05D012436 ORTHO05D003476 4.7e-06 57.0 74 40.5
BolC3t13894H Brassica oleracea HOM05D012436 ORTHO05D003476 4.7e-06 57.0 74 40.5
CDE04G2158 Ceratophyllum demersum HOM05D008057 ORTHO05D003476 4.7e-06 57.0 85 38.8
COL.COLO4_33681 Corchorus olitorius HOM05D002656 ORTHO05D003062 4.7e-06 57.0 56 44.6
Thhalv10014108m.g Eutrema salsugineum HOM05D012436 ORTHO05D003476 4.7e-06 57.0 50 52.0
Gohir.D02G118700 Gossypium hirsutum HOM05D008057 ORTHO05D003476 6.2e-06 56.6 73 38.4
GSVIVG01024238001 Vitis vinifera HOM05D008057 ORTHO05D003476 6.2e-06 56.6 57 47.4
A03p12360 Brassica napus HOM05D012436 ORTHO05D003476 8.1e-06 56.2 74 39.2
Duzib068G0937 Durio zibethinus HOM05D008057 ORTHO05D003476 8.1e-06 56.2 77 36.4
ECA233G4523 Erigeron canadensis HOM05D008057 ORTHO05D003476 8.1e-06 56.2 66 37.9
Potri.018G151900 Populus trichocarpa HOM05D008057 ORTHO05D003476 8.1e-06 56.2 85 34.1
TAR311G0002 Trochodendron aralioides HOM05D008057 ORTHO05D003476 8.1e-06 56.2 76 35.5
unitig_746.g26880 Utricularia gibba HOM05D008057 ORTHO05D003476 8.1e-06 56.2 80 43.8
VMungo0464G0225 Vigna mungo HOM05D008057 ORTHO05D003476 8.1e-06 56.2 97 30.9


User provided reference genes

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