Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0011319 Lotus japonicus HOM05D005036 ORTHO05D005881 3.0e-79 298.9 207 100.0
Ca_08897_v3 Cicer arietinum L. HOM05D005036 ORTHO05D005881 4.0e-55 218.8 205 80.5
Lalb_Chr02g0155461 Lupinus albus HOM05D005036 ORTHO05D005881 2.4e-52 209.5 205 78.5
VMungo0720G2361 Vigna mungo HOM05D005036 ORTHO05D005881 2.4e-52 209.5 205 77.6
Phvul.007G151800 Phaseolus vulgaris HOM05D005036 ORTHO05D005881 2.7e-51 206.1 205 76.6
Psat6g076000 Pisum sativum HOM05D005036 ORTHO05D005881 7.7e-51 204.5 207 77.3
Glyma.13G146500 Glycine max HOM05D005036 ORTHO05D005881 1.1e-49 200.7 205 76.1
Glyma.10G059800 Glycine max HOM05D005036 ORTHO05D005881 1.5e-49 200.3 205 76.1
Medtr1g062770 Medicago truncatula HOM05D005036 ORTHO05D005881 2.5e-49 199.5 204 77.0
arahy.Tifrunner.gnm1.ann1.HJT5F9 Arachis hypogaea HOM05D005036 ORTHO05D005881 4.7e-48 195.3 207 76.3
arahy.Tifrunner.gnm1.ann1.LB0AEW Arachis hypogaea HOM05D005036 ORTHO05D005881 4.7e-48 195.3 207 76.3
TPR.G20997 Trifolium pratense HOM05D005036 ORTHO05D005881 4.0e-47 192.2 205 74.6
CsaV3_3G036210 Cucumis sativus L. HOM05D005036 ORTHO05D005881 6.8e-47 191.4 207 69.6
ClCG10G019890 Citrullus lanatus HOM05D005036 ORTHO05D005881 8.9e-47 191.0 206 73.8
MELO3C009379.2 Cucumis melo HOM05D005036 ORTHO05D005881 5.7e-46 188.3 203 69.0
MD12G1106800 Malus domestica HOM05D005036 ORTHO05D005881 9.8e-46 187.6 201 73.1
Cfa017655 Carpinus fangiana HOM05D005036 ORTHO05D005881 1.3e-45 187.2 201 71.1
Sed0017772 Sechium edule HOM05D005036 ORTHO05D005881 3.7e-45 185.7 202 71.3
Ciclev10012800m.g Citrus clementina HOM05D005036 ORTHO05D005881 2.4e-44 183.0 202 74.3
Nn2g13858 Nelumbo nucifera HOM05D005036 ORTHO05D005881 3.1e-44 182.6 205 70.2
FAN02G0694 Fragaria x ananassa HOM05D000001 ORTHO05D000003 4.1e-44 182.2 204 74.0
Haze_20497 Corylus avellana HOM05D005036 ORTHO05D005881 7.0e-44 181.4 205 66.3
RcHm_v2.0_Chr3g0470841 Rosa chinensis HOM05D005036 ORTHO05D005881 1.2e-43 180.6 205 72.2
FvH4_6g16830 Fragaria vesca HOM05D005036 ORTHO05D005881 1.6e-43 180.3 204 73.5
FAN05G3428 Fragaria x ananassa HOM05D005036 ORTHO05D005881 1.6e-43 180.3 204 73.5
FAN09G0503 Fragaria x ananassa HOM05D005036 ORTHO05D000003 1.6e-43 180.3 204 73.5
FAN14G1811 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.6e-43 180.3 204 73.5
QL07p042294 Quercus lobata HOM05D005036 ORTHO05D005881 1.6e-43 180.3 232 64.7
Duzib093G0365 Durio zibethinus HOM05D005036 ORTHO05D005881 3.5e-43 179.1 206 71.4
GSVIVG01033679001 Vitis vinifera HOM05D005036 ORTHO05D005881 4.5e-43 178.7 207 72.5
CiPaw.10G127400 Carya illinoinensis HOM05D005036 ORTHO05D005881 5.9e-43 178.3 200 72.5
Cpa.g.sc92.91 Carica papaya HOM05D005036 ORTHO05D005881 7.8e-43 177.9 202 70.3
FAN05G0966 Fragaria x ananassa HOM05D005036 ORTHO05D005881 1.0e-42 177.6 204 73.0
Actinidia31315 Actinidia chinensis HOM05D005036 ORTHO05D005881 1.3e-42 177.2 205 70.2
Prupe.7G125700 Prunus persica HOM05D005036 ORTHO05D005881 1.3e-42 177.2 202 71.8
Thecc.05G071400 Theobroma cacao HOM05D005036 ORTHO05D005881 2.3e-42 176.4 201 71.1
Atru.chr8.1751 Acer truncatum HOM05D005036 ORTHO05D005881 2.9e-42 176.0 202 70.8
Actinidia32478 Actinidia chinensis HOM05D005036 ORTHO05D005881 2.9e-42 176.0 205 68.3
CANSAT80G0983 Cannabis sativa HOM05D005036 ORTHO05D005881 6.6e-42 174.9 206 69.9
Gohir.D01G201000 Gossypium hirsutum HOM05D005036 ORTHO05D005881 3.3e-41 172.6 202 70.3
Aqoxy1G01100 Aquilegia oxysepala HOM05D005036 ORTHO05D005881 4.3e-41 172.2 201 63.7
PGR004G0584 Punica granatum HOM05D005036 ORTHO05D005881 9.5e-41 171.0 207 69.6
EL10Ac7g16693 Beta vulgaris HOM05D005036 ORTHO05D005881 1.2e-40 170.6 205 67.8
Duzib128G0734 Durio zibethinus HOM05D005036 ORTHO05D005881 1.6e-40 170.2 206 69.9
Gohir.A01G214100 Gossypium hirsutum HOM05D005036 ORTHO05D005881 1.6e-40 170.2 202 70.8
TWI53G1582 Tripterygium wilfordii HOM05D005036 ORTHO05D005881 4.7e-40 168.7 206 68.4
HanXRQChr13g0400721 Helianthus annuus HOM05D005036 ORTHO05D005881 4.0e-39 165.6 205 67.3
Manes.09G062100 Manihot esculenta HOM05D005036 ORTHO05D005881 4.0e-39 165.6 199 69.3
AUR62041564 Chenopodium quinoa HOM05D005036 ORTHO05D005881 5.2e-39 165.2 205 66.8
Sc02g0001470 Simmondsia chinensis HOM05D005036 ORTHO05D005881 5.2e-39 165.2 206 54.4
AUR62026956 Chenopodium quinoa HOM05D005036 ORTHO05D005881 8.9e-39 164.5 205 66.3
Potri.016G097900 Populus trichocarpa HOM05D005036 ORTHO05D005881 2.6e-38 162.9 194 70.1
HPP92_008393 Vanilla planifolia HOM05D005036 ORTHO05D005881 2.6e-38 162.9 206 56.3
Manes.08G013000 Manihot esculenta HOM05D005036 ORTHO05D005881 3.4e-38 162.5 200 69.0
Lsat_1_v5_gn_6_28400 Lactuca sativa HOM05D005036 ORTHO05D005881 1.3e-37 160.6 200 68.0
Gorai.002G245700 Gossypium raimondii HOM05D005036 ORTHO05D005881 2.2e-37 159.8 182 74.2
Cc06_g04530 Coffea canephora HOM05D005036 ORTHO05D005881 2.9e-37 159.5 205 65.9
Oeu016995.1 Olea europaea HOM05D005036 ORTHO05D005881 8.3e-37 157.9 206 66.0
RhsimUnG0004000 Rhododendron simsii HOM05D005036 ORTHO05D005881 8.3e-37 157.9 210 61.0
RhsimUnG0067400 Rhododendron simsii HOM05D005036 ORTHO05D005881 8.3e-37 157.9 210 61.0
Hund20124 Selenicereus undatus HOM05D005036 ORTHO05D005881 2.4e-36 156.4 217 64.1
ECA233G6008 Erigeron canadensis HOM05D005036 ORTHO05D005881 4.1e-36 155.6 205 66.3
Eucgr.A01621 Eucalyptus grandis HOM05D005036 ORTHO05D005881 2.0e-35 153.3 184 71.2
SGA_v2.0_scaffold224G42932 Striga asiatica HOM05D005036 ORTHO05D005881 2.0e-35 153.3 189 64.0
Peaxi162Scf00110g00120 Petunia axillaris HOM05D005036 ORTHO05D005881 3.5e-35 152.5 207 66.2
Sabra06G0095700 Salix brachista HOM05D005036 ORTHO05D005881 4.6e-35 152.1 195 68.2
CSS0031942 Camellia sinensis var. sinensis HOM05D005036 ORTHO05D005881 6.0e-35 151.8 204 67.2
CSS0042807 Camellia sinensis var. sinensis HOM05D005036 ORTHO05D005881 6.0e-35 151.8 204 67.2
Hma1.2p1_0547F.1_g176530 Hydrangea macrophylla HOM05D005036 ORTHO05D005881 1.0e-34 151.0 201 67.7
MSTRG.10334 Avicennia marina HOM05D005036 ORTHO05D005881 1.3e-34 150.6 205 57.1
Potri.006G121500 Populus trichocarpa HOM05D005036 ORTHO05D005881 1.3e-34 150.6 195 67.2
AL3G21130 Arabidopsis lyrata HOM05D005036 ORTHO05D005881 1.7e-34 150.2 201 60.7
COL.COLO4_26911 Corchorus olitorius HOM05D005036 ORTHO05D005881 2.3e-34 149.8 225 63.1
Oeu056532.1 Olea europaea HOM05D005036 ORTHO05D005881 2.3e-34 149.8 194 70.1
TAR623G1598 Trochodendron aralioides HOM05D005036 ORTHO05D005881 8.6e-34 147.9 201 63.7
Migut.L01721 Erythranthe guttata HOM05D005036 ORTHO05D005881 1.5e-33 147.1 211 64.5
Nitab4.5_0000132g0510 Nicotiana tabacum HOM05D005036 ORTHO05D005881 2.5e-33 146.4 206 64.1
Peaxi162Scf01128g00018 Petunia axillaris HOM05D005036 ORTHO05D005881 2.5e-33 146.4 200 53.0
THA.LOC104823230 Tarenaya hassleriana HOM05D005036 ORTHO05D005881 2.5e-33 146.4 200 64.0
PSO339G6683 Papaver somniferum HOM05D005036 ORTHO05D005881 3.3e-33 146.0 201 63.2
SGA_v2.0_scaffold40G15474 Striga asiatica HOM05D005036 ORTHO05D005881 3.3e-33 146.0 209 62.7
AT3G09890 Arabidopsis thaliana HOM05D005036 ORTHO05D005881 7.3e-33 144.8 200 59.0
Migut.J00453 Erythranthe guttata HOM05D005036 ORTHO05D005881 7.3e-33 144.8 203 64.0
Thhalv10021529m.g Eutrema salsugineum HOM05D005036 ORTHO05D005881 7.3e-33 144.8 200 57.0
CAN.G488.30 Capsicum annuum HOM05D005036 ORTHO05D005881 2.1e-32 143.3 206 64.6
unitig_578.g16379 Utricularia gibba HOM05D000468 ORTHO05D005881 2.8e-32 142.9 207 63.8
BolC3t16615H Brassica oleracea HOM05D005036 ORTHO05D005881 6.2e-32 141.7 202 43.6
Nitab4.5_0002373g0080 Nicotiana tabacum HOM05D005036 ORTHO05D005881 6.2e-32 141.7 200 62.5
Dinv37336 Davidia involucrata HOM05D005036 ORTHO05D005881 1.1e-31 141.0 141 67.4
Nitab4.5_0003314g0090 Nicotiana tabacum HOM05D005036 ORTHO05D005881 1.4e-31 140.6 200 61.5
C03p43440 Brassica napus HOM05D005036 ORTHO05D005881 1.8e-31 140.2 202 43.1
CARHR084400 Cardamine hirsuta HOM05D005036 ORTHO05D005881 1.8e-31 140.2 202 58.4
Solyc09g008450.3 Solanum lycopersicum HOM05D005036 ORTHO05D005881 2.3e-31 139.8 200 60.0
A03p35790 Brassica napus HOM05D005036 ORTHO05D005881 4.0e-31 139.0 202 42.6
BraA03t12751Z Brassica rapa HOM05D005036 ORTHO05D005881 4.0e-31 139.0 202 42.6
Sopen09g003280 Solanum pennellii HOM05D005036 ORTHO05D005881 4.0e-31 139.0 200 61.5
BcaC01g04251 Brassica carinata HOM05D005036 ORTHO05D005881 5.2e-31 138.7 201 60.7
Sopen10g033320 Solanum pennellii HOM05D005036 ORTHO05D005881 5.2e-31 138.7 206 64.1
Carub.0003s0899 Capsella rubella HOM05D005036 ORTHO05D005881 1.5e-30 137.1 200 59.0
CDE06G0353 Ceratophyllum demersum HOM05D005036 ORTHO05D005881 1.5e-30 137.1 200 62.5
Sp3g08240 Schrenkiella parvula HOM05D005036 ORTHO05D005881 2.0e-30 136.7 201 49.3
PGSC0003DMG400028280 Solanum tuberosum HOM05D005036 ORTHO05D005881 2.0e-30 136.7 206 63.6
vmacro08795 Vaccinium macrocarpon HOM05D005036 ORTHO05D005881 4.4e-30 135.6 257 43.6
DCAR_017666 Daucus carota HOM05D005036 ORTHO05D005881 5.8e-30 135.2 201 62.2
PGSC0003DMG400003873 Solanum tuberosum HOM05D005036 ORTHO05D005881 1.3e-29 134.0 200 61.0
BcaB03g11582 Brassica carinata HOM05D005036 ORTHO05D005881 2.2e-29 133.3 200 57.5
BcaC01g04252 Brassica carinata HOM05D005036 ORTHO05D005881 2.2e-29 133.3 188 42.6
PSO063G2941 Papaver somniferum HOM05D005036 ORTHO05D005881 7.0e-28 128.3 181 65.7
Aa31LG3G2370 Aethionema arabicum HOM05D005036 ORTHO05D005881 1.0e-26 124.4 181 49.2
ATR0329G020 Amborella trichopoda HOM05D005036 ORTHO05D005881 1.0e-26 124.4 207 59.9
DCAR_015009 Daucus carota HOM05D005036 ORTHO05D005881 1.5e-25 120.6 233 46.4
SEGI_13906 Sequoiadendron giganteum HOM05D005036 ORTHO05D005881 1.2e-24 117.5 197 60.9
MBI13_g13833_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 1.1e-23 114.4 210 46.7
Nitab4.5_0003268g0010 Nicotiana tabacum HOM05D005036 ORTHO05D005881 1.4e-23 114.0 206 49.0
DCAR_032184 Daucus carota HOM05D005036 ORTHO05D005881 6.8e-23 111.7 216 46.3
Lj3A990G72 Lonicera japonica HOM05D005036 ORTHO05D005881 8.9e-23 111.3 145 74.5
Sc02g0001400 Simmondsia chinensis HOM05D005036 ORTHO05D005881 1.9e-20 103.6 205 44.4
BcaC05g29716 Brassica carinata HOM05D005036 ORTHO05D005881 1.2e-19 100.9 203 34.5
Psat6g104720 Pisum sativum HOM05D001839 ORTHO05D001867 2.1e-19 100.1 176 39.8
Zm00001eb003690 Zea mays HOM05D005036 ORTHO05D005881 1.5e-17 94.0 210 53.8
BcaC05g29714 Brassica carinata HOM05D005036 ORTHO05D005881 1.9e-17 93.6 203 36.9
BcaC05g29715 Brassica carinata HOM05D005036 ORTHO05D005881 1.9e-17 93.6 203 36.9
Carub.0003s0923 Capsella rubella HOM05D005036 ORTHO05D005881 4.3e-17 92.4 139 65.5
Pp3c10_11210 Physcomitrium patens HOM05D005036 ORTHO05D005881 7.3e-17 91.7 173 54.3
Os03g0145800 Oryza sativa ssp. japonica HOM05D005036 ORTHO05D005881 9.5e-17 91.3 138 50.0
BcaC05g29712 Brassica carinata HOM05D005036 ORTHO05D005881 1.2e-16 90.9 203 36.5
MBI18_g12436_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 2.1e-16 90.1 151 62.9
BcaC05g29713 Brassica carinata HOM05D005036 ORTHO05D005881 3.6e-16 89.4 203 36.5
BcaC05g29502 Brassica carinata HOM05D005036 ORTHO05D005881 6.2e-16 88.6 200 48.0
BcaC05g29503 Brassica carinata HOM05D005036 ORTHO05D005881 6.2e-16 88.6 200 48.0
C05p58170 Brassica napus HOM05D005036 ORTHO05D005881 6.2e-16 88.6 200 48.0
BolC5t34473H Brassica oleracea HOM05D005036 ORTHO05D005881 6.2e-16 88.6 200 48.0
MBI01_g04638_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 1.4e-15 87.4 150 63.3
THA.LOC104816666 Tarenaya hassleriana HOM05D005036 ORTHO05D005881 2.4e-15 86.7 84 51.2
Psat4g020880 Pisum sativum HOM05D005036 ORTHO05D005881 5.2e-15 85.5 78 78.2
A05p39150 Brassica napus HOM05D005036 ORTHO05D005881 6.8e-15 85.1 200 50.5
BraA05t22704Z Brassica rapa HOM05D005036 ORTHO05D005881 6.8e-15 85.1 200 50.5
AagrBONN_evm.TU.Sc2ySwM_368.2717 Anthoceros agrestis HOM05D005036 ORTHO05D005881 5.8e-14 82.0 143 37.8
MBI15_g24508_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 5.8e-14 82.0 142 43.7
MBI16_g11024_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 2.2e-13 80.1 150 46.0
CBR_g9117 Chara braunii HOM05D005036 ORTHO05D005881 7.1e-12 75.1 196 49.5
MD04G1089000 Malus domestica HOM05D005036 ORTHO05D005881 7.8e-11 71.6 114 58.8
Ah.14g078370 Amaranthus hybridus HOM05D005036 ORTHO05D005881 1.0e-10 71.2 83 53.0
Lj3C990T8 Lonicera japonica HOM05D005036 ORTHO05D005881 1.2e-08 64.3 61 65.6
MCO14G431 Micromonas commoda HOM05D005036 ORTHO05D005881 5.3e-07 58.9 58 44.8
Solyc10g083870.2 Solanum lycopersicum HOM05D005036 ORTHO05D005881 2.0e-06 57.0 120 52.5
Cre06.g283300 Chlamydomonas reinhardtii HOM05D005036 ORTHO05D005881 9.9e-06 54.7 79 39.2


User provided reference genes

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