Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0010566 Lotus japonicus HOM05D007373 ORTHO05D009192 5.4e-58 227.3 100 100.0
MD12G1113600 Malus domestica HOM05D007373 ORTHO05D009192 7.0e-50 200.3 100 85.0
Sed0025593 Sechium edule HOM05D007373 ORTHO05D009192 1.2e-49 199.5 100 84.0
MD04G1093900 Malus domestica HOM05D007373 ORTHO05D009192 1.6e-49 199.1 100 85.0
Glyma.10G056800 Glycine max HOM05D007373 ORTHO05D009192 2.7e-49 198.4 100 81.0
Solyc09g008155.1 Solanum lycopersicum HOM05D007373 ORTHO05D009192 6.0e-49 197.2 100 86.0
Sopen09g002960 Solanum pennellii HOM05D007373 ORTHO05D009192 6.0e-49 197.2 100 86.0
PGSC0003DMG400003861 Solanum tuberosum HOM05D007373 ORTHO05D009192 6.0e-49 197.2 100 86.0
ClCG10G020140 Citrullus lanatus HOM05D007373 ORTHO05D009192 7.8e-49 196.8 100 83.0
Prupe.6G232500 Prunus persica HOM05D007373 ORTHO05D009192 7.8e-49 196.8 100 85.0
QL07p043588 Quercus lobata HOM05D007373 ORTHO05D009192 7.8e-49 196.8 99 82.8
Nitab4.5_0002632g0030 Nicotiana tabacum HOM05D007373 ORTHO05D009192 2.3e-48 195.3 100 85.0
PGR004G1687 Punica granatum HOM05D007373 ORTHO05D009192 2.3e-48 195.3 100 83.0
Thecc.05G065600 Theobroma cacao HOM05D007373 ORTHO05D009192 3.0e-48 194.9 100 83.0
Peaxi162Scf00701g00211 Petunia axillaris HOM05D007373 ORTHO05D009192 8.6e-48 193.4 100 84.0
CANSAT80G1991 Cannabis sativa HOM05D007373 ORTHO05D009192 1.9e-47 192.2 100 82.0
Gohir.A09G147200 Gossypium hirsutum HOM05D007373 ORTHO05D009192 1.9e-47 192.2 100 81.0
Gohir.D09G142800 Gossypium hirsutum HOM05D007373 ORTHO05D009192 1.9e-47 192.2 100 81.0
Gorai.006G164300 Gossypium raimondii HOM05D007373 ORTHO05D009192 1.9e-47 192.2 100 81.0
Glyma.13G143300 Glycine max HOM05D007373 ORTHO05D009192 7.3e-47 190.3 97 79.4
Eucgr.A01684 Eucalyptus grandis HOM05D007373 ORTHO05D009192 1.2e-46 189.5 100 79.0
RcHm_v2.0_Chr3g0470161 Rosa chinensis HOM05D007373 ORTHO05D009192 1.2e-46 189.5 100 81.0
CSS0040934 Camellia sinensis var. sinensis HOM05D007373 ORTHO05D009192 1.6e-46 189.1 98 81.6
Phvul.007G219900 Phaseolus vulgaris HOM05D007373 ORTHO05D009192 1.6e-46 189.1 100 79.0
Cfa017601 Carpinus fangiana HOM05D007373 ORTHO05D009192 2.1e-46 188.7 100 80.0
CSS0019413 Camellia sinensis var. sinensis HOM05D007373 ORTHO05D009192 2.8e-46 188.3 98 81.6
CAN.G900.38 Capsicum annuum HOM05D007373 ORTHO05D009192 3.6e-46 188.0 100 79.0
GSVIVG01025730001 Vitis vinifera HOM05D007373 ORTHO05D009192 3.6e-46 188.0 100 79.0
Migut.J00499 Erythranthe guttata HOM05D007373 ORTHO05D009192 1.1e-45 186.4 100 82.0
Nn3g17468 Nelumbo nucifera HOM05D007373 ORTHO05D009192 1.4e-45 186.0 100 78.0
Sabra16G0097700 Salix brachista HOM05D007373 ORTHO05D009192 1.8e-45 185.7 100 80.0
CiPaw.09G173000 Carya illinoinensis HOM05D007373 ORTHO05D009192 2.3e-45 185.3 98 80.6
Potri.016G092100 Populus trichocarpa HOM05D007373 ORTHO05D009192 2.3e-45 185.3 100 80.0
Peaxi162Scf00311g00515 Petunia axillaris HOM05D007373 ORTHO05D009192 4.0e-45 184.5 95 83.2
TAR374G0263 Trochodendron aralioides HOM05D007373 ORTHO05D009192 4.0e-45 184.5 100 78.0
Dinv35786 Davidia involucrata HOM05D007373 ORTHO05D009192 6.8e-45 183.7 100 80.0
TAR629G0480 Trochodendron aralioides HOM05D007373 ORTHO05D009192 1.5e-44 182.6 100 76.0
Sc02g0001650 Simmondsia chinensis HOM05D007373 ORTHO05D009192 2.0e-44 182.2 100 77.0
Duzib128G1309 Durio zibethinus HOM05D007373 ORTHO05D009192 3.4e-44 181.4 100 75.0
COL.COLO4_26968 Corchorus olitorius HOM05D007373 ORTHO05D009192 4.4e-44 181.0 100 78.0
DCAR_020820 Daucus carota HOM05D007373 ORTHO05D009192 5.8e-44 180.6 100 76.0
Carub.0003s0895 Capsella rubella HOM05D007373 ORTHO05D009192 9.9e-44 179.9 100 80.0
Lsat_1_v5_gn_6_25141 Lactuca sativa HOM05D007373 ORTHO05D009192 1.7e-43 179.1 100 72.0
FvH4_6g16300 Fragaria vesca HOM05D007373 ORTHO05D009192 2.9e-43 178.3 100 74.0
FAN14G5019 Fragaria x ananassa HOM05D007373 ORTHO05D009192 2.9e-43 178.3 100 74.0
THA.LOC104816346 Tarenaya hassleriana HOM05D007373 ORTHO05D009192 3.7e-43 177.9 100 78.0
AL3G21090 Arabidopsis lyrata HOM05D007373 ORTHO05D009192 4.9e-43 177.6 100 79.0
AT3G09860 Arabidopsis thaliana HOM05D007373 ORTHO05D009192 4.9e-43 177.6 100 79.0
FAN02G4061 Fragaria x ananassa HOM05D007373 ORTHO05D009192 4.9e-43 177.6 100 73.0
MBI16_g10844_MAGBIO Magnolia biondii HOM05D007373 ORTHO05D009192 4.9e-43 177.6 98 77.6
Cc06_g04200 Coffea canephora HOM05D007373 ORTHO05D009192 6.4e-43 177.2 100 75.0
CARHR084370 Cardamine hirsuta HOM05D007373 ORTHO05D009192 1.4e-42 176.0 100 78.0
BcaC05g29497 Brassica carinata HOM05D007373 ORTHO05D009192 1.9e-42 175.6 100 78.0
A05p39190 Brassica napus HOM05D007373 ORTHO05D009192 1.9e-42 175.6 100 78.0
C05p58240 Brassica napus HOM05D007373 ORTHO05D009192 1.9e-42 175.6 100 78.0
BolC5t34478H Brassica oleracea HOM05D007373 ORTHO05D009192 1.9e-42 175.6 100 78.0
BraA05t22708Z Brassica rapa HOM05D007373 ORTHO05D009192 1.9e-42 175.6 100 78.0
Atru.chr8.1817 Acer truncatum HOM05D007373 ORTHO05D009192 2.4e-42 175.3 98 74.5
Manes.08G010000 Manihot esculenta HOM05D007373 ORTHO05D009192 2.4e-42 175.3 100 74.0
Sp3g08200 Schrenkiella parvula HOM05D007373 ORTHO05D009192 4.1e-42 174.5 100 78.0
ECA233G3432 Erigeron canadensis HOM05D007373 ORTHO05D009192 5.4e-42 174.1 100 70.0
PSO017G7276 Papaver somniferum HOM05D007373 ORTHO05D009192 5.4e-42 174.1 100 73.0
PSO478G2855 Papaver somniferum HOM05D007373 ORTHO05D009192 5.4e-42 174.1 100 73.0
TWI53G0924 Tripterygium wilfordii HOM05D007373 ORTHO05D009192 5.4e-42 174.1 100 74.0
Thhalv10022256m.g Eutrema salsugineum HOM05D007373 ORTHO05D009192 1.2e-41 172.9 100 77.0
unitig_27.g25376 Utricularia gibba HOM05D007373 ORTHO05D009192 1.2e-41 172.9 100 75.0
BcaC05g29708 Brassica carinata HOM05D007373 ORTHO05D009192 1.6e-41 172.6 100 76.0
EL10Ac7g16624 Beta vulgaris HOM05D007373 ORTHO05D009192 2.1e-41 172.2 100 73.0
Ciclev10013190m.g Citrus clementina HOM05D007373 ORTHO05D009192 2.7e-41 171.8 100 73.0
HanXRQChr02g0051631 Helianthus annuus HOM05D007373 ORTHO05D009192 3.5e-41 171.4 100 70.0
TWI74G0510 Tripterygium wilfordii HOM05D007373 ORTHO05D009192 6.0e-41 170.6 100 74.0
Cpa.g.sc56.30 Carica papaya HOM05D007373 ORTHO05D009192 1.3e-40 169.5 88 83.0
HanXRQChr13g0401061 Helianthus annuus HOM05D007373 ORTHO05D009192 1.3e-40 169.5 100 69.0
CDE10G1255 Ceratophyllum demersum HOM05D007373 ORTHO05D009192 1.7e-40 169.1 98 70.4
ATR0177G027 Amborella trichopoda HOM05D007373 ORTHO05D009192 2.3e-40 168.7 100 74.0
Lalb_Chr02g0155881 Lupinus albus HOM05D007373 ORTHO05D009192 6.6e-40 167.2 100 73.0
Lalb_Chr02g0155991 Lupinus albus HOM05D007373 ORTHO05D009192 6.6e-40 167.2 100 73.0
CsaV3_3G035970 Cucumis sativus L. HOM05D007373 ORTHO05D009192 1.1e-39 166.4 100 71.0
CDE10G0795 Ceratophyllum demersum HOM05D007373 ORTHO05D009192 1.5e-39 166.0 98 68.4
Medtr1g063360 Medicago truncatula HOM05D007373 ORTHO05D009192 1.9e-39 165.6 99 69.7
Dinv37313 Davidia involucrata HOM05D007373 ORTHO05D009192 4.7e-38 161.0 85 78.8
Aqoxy3G03675 Aquilegia oxysepala HOM05D007373 ORTHO05D009192 6.8e-37 157.1 98 68.4
Psat6g073000 Pisum sativum HOM05D007373 ORTHO05D009192 7.6e-36 153.7 99 64.6
TPR.G6865 Trifolium pratense HOM05D007373 ORTHO05D009192 7.6e-36 153.7 99 66.7
Duzib106G1098 Durio zibethinus HOM05D007373 ORTHO05D009192 9.9e-36 153.3 134 53.0
AUR62040359 Chenopodium quinoa HOM05D007373 ORTHO05D009192 2.4e-34 148.7 100 66.0
AUR62042495 Chenopodium quinoa HOM05D007373 ORTHO05D009192 2.4e-34 148.7 100 66.0
Actinidia28903 Actinidia chinensis HOM05D007373 ORTHO05D009192 3.5e-33 144.8 100 62.0
Actinidia08775 Actinidia chinensis HOM05D007373 ORTHO05D009192 6.0e-33 144.1 100 60.0
SGA_v2.0_scaffold40G15517 Striga asiatica HOM05D007373 ORTHO05D009192 6.0e-33 144.1 111 57.7
BolC1t05427H Brassica oleracea HOM05D007373 ORTHO05D009192 5.1e-32 141.0 88 71.6
Aa31LG3G2330 Aethionema arabicum HOM05D007373 ORTHO05D009192 1.9e-31 139.0 170 44.7
Nitab4.5_0000578g0180 Nicotiana tabacum HOM05D007373 ORTHO05D009192 5.6e-31 137.5 70 84.3
Pp3c23_20900 Physcomitrium patens HOM05D007373 ORTHO05D009192 1.3e-27 126.3 101 57.4
Mapoly0091s0024 Marchantia polymorpha HOM05D007373 ORTHO05D009192 3.9e-24 114.8 101 52.5
AagrBONN_evm.TU.Sc2ySwM_368.2821 Anthoceros agrestis HOM05D007373 ORTHO05D009192 1.5e-23 112.8 102 55.9
BcaB04g21242 Brassica carinata HOM05D007373 ORTHO05D009192 3.4e-20 101.7 58 75.9
SEGI_18158 Sequoiadendron giganteum HOM05D007373 ORTHO05D009192 1.4e-18 96.3 100 43.0
Ah.15g092500 Amaranthus hybridus HOM05D007373 ORTHO05D009192 4.5e-12 74.7 37 83.8
Nn2g15280 Nelumbo nucifera HOM05D007373 ORTHO05D009192 6.5e-11 70.9 40 72.5
Atru.BG.127.p Acer truncatum HOM05D007373 ORTHO05D009192 5.5e-10 67.8 31 87.1
Os03g0578200 Oryza sativa ssp. japonica HOM05D007373 ORTHO05D009192 1.0e-08 63.5 76 36.8
Zm00001eb212440 Zea mays HOM05D007373 ORTHO05D009192 6.7e-08 60.8 74 35.1
Zm00001eb061850 Zea mays HOM05D007373 ORTHO05D009192 1.9e-07 59.3 76 34.2
CBR_g23007 Chara braunii HOM05D007373 ORTHO05D009192 9.6e-07 57.0 81 34.6


User provided reference genes

Program Settings