Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0010316 Lotus japonicus HOM05D004997 ORTHO05D005921 2.6e-60 235.3 130 100.0
Lj4g0009583 Lotus japonicus HOM05D004997 ORTHO05D005921 5.7e-60 234.2 130 99.2
Medtr5g055650 Medicago truncatula HOM05D004997 ORTHO05D005921 9.1e-58 226.9 130 94.6
Psat2g084800 Pisum sativum HOM05D004997 ORTHO05D005921 1.2e-57 226.5 130 93.8
VMungo0251G3606 Vigna mungo HOM05D004997 ORTHO05D005921 2.7e-57 225.3 130 93.1
Glyma.12G006600 Glycine max HOM05D004997 ORTHO05D005921 4.5e-57 224.6 130 93.1
Glyma.08G046600 Glycine max HOM05D004997 ORTHO05D005921 5.9e-57 224.2 130 93.1
Phvul.002G321900 Phaseolus vulgaris HOM05D004997 ORTHO05D005921 1.3e-56 223.0 130 90.8
Lalb_Chr05g0222161 Lupinus albus HOM05D004997 ORTHO05D005921 3.8e-56 221.5 127 94.5
Dinv32261 Davidia involucrata HOM05D004997 ORTHO05D005921 4.2e-55 218.0 129 90.7
Solyc08g016420.3 Solanum lycopersicum HOM05D004997 ORTHO05D005921 4.7e-54 214.5 129 87.6
Sopen08g006800 Solanum pennellii HOM05D004997 ORTHO05D005921 4.7e-54 214.5 129 87.6
CANSAT35G1260 Cannabis sativa HOM05D004997 ORTHO05D005921 6.1e-54 214.2 129 89.1
Gorai.011G043400 Gossypium raimondii HOM05D004997 ORTHO05D005921 6.1e-54 214.2 129 89.9
CSS0020008 Camellia sinensis var. sinensis HOM05D004997 ORTHO05D005921 8.0e-54 213.8 129 89.9
Eucgr.E02397 Eucalyptus grandis HOM05D004997 ORTHO05D005921 8.0e-54 213.8 129 89.1
Cfa000953 Carpinus fangiana HOM05D004997 ORTHO05D005921 1.0e-53 213.4 129 89.9
Gohir.A10G040300 Gossypium hirsutum HOM05D004997 ORTHO05D005921 1.8e-53 212.6 129 89.1
MSTRG.16239 Avicennia marina HOM05D004997 ORTHO05D005921 3.0e-53 211.8 125 89.6
SGA_v2.0_scaffold1G00167 Striga asiatica HOM05D004997 ORTHO05D005921 3.0e-53 211.8 125 90.4
Actinidia07691 Actinidia chinensis HOM05D004997 ORTHO05D005921 5.2e-53 211.1 129 88.4
Migut.M00914 Erythranthe guttata HOM05D004997 ORTHO05D005921 6.8e-53 210.7 124 91.1
AT1G29990 Arabidopsis thaliana HOM05D004997 ORTHO05D005921 8.9e-53 210.3 130 84.6
ECA233G0220 Erigeron canadensis HOM05D004997 ORTHO05D005921 1.2e-52 209.9 130 86.9
FAN11G3072 Fragaria x ananassa HOM05D004997 ORTHO05D005921 1.5e-52 209.5 129 89.1
TWI38G0351 Tripterygium wilfordii HOM05D004997 ORTHO05D005921 1.5e-52 209.5 129 86.8
Carub.0001s2824 Capsella rubella HOM05D004997 ORTHO05D005921 2.0e-52 209.1 129 85.3
PSO339G4484 Papaver somniferum HOM05D004997 ORTHO05D005921 2.0e-52 209.1 129 87.6
Thecc.06G151500 Theobroma cacao HOM05D004997 ORTHO05D005921 2.0e-52 209.1 129 88.4
Ciclev10017164m.g Citrus clementina HOM05D004997 ORTHO05D005921 2.6e-52 208.8 129 89.1
RcHm_v2.0_Chr5g0013981 Rosa chinensis HOM05D004997 ORTHO05D005921 2.6e-52 208.8 129 89.1
CARHR029400 Cardamine hirsuta HOM05D004997 ORTHO05D005921 3.4e-52 208.4 129 86.0
Gohir.D05G151300 Gossypium hirsutum HOM05D004997 ORTHO05D005921 3.4e-52 208.4 129 87.6
Gohir.D10G041200 Gossypium hirsutum HOM05D004997 ORTHO05D005921 3.4e-52 208.4 129 88.4
Gorai.009G155300 Gossypium raimondii HOM05D004997 ORTHO05D005921 3.4e-52 208.4 129 87.6
Potri.004G131900 Populus trichocarpa HOM05D004997 ORTHO05D005921 3.4e-52 208.4 129 88.4
FvH4_3g05660 Fragaria vesca HOM05D004997 ORTHO05D005921 4.4e-52 208.0 129 88.4
THA.LOC104814295 Tarenaya hassleriana HOM05D004997 ORTHO05D005921 4.4e-52 208.0 129 85.3
MSTRG.7483 Avicennia marina HOM05D004997 ORTHO05D005921 5.7e-52 207.6 125 88.8
PSO384G3576 Papaver somniferum HOM05D004997 ORTHO05D005921 5.7e-52 207.6 129 86.8
TWI38G1166 Tripterygium wilfordii HOM05D004997 ORTHO05D005921 5.7e-52 207.6 127 87.4
Duzib192G0549 Durio zibethinus HOM05D004997 ORTHO05D005921 7.5e-52 207.2 130 88.5
Sed0006544 Sechium edule HOM05D004997 ORTHO05D005921 7.5e-52 207.2 129 86.0
FAN21G2809 Fragaria x ananassa HOM05D004997 ORTHO05D005921 9.8e-52 206.8 129 88.4
unitig_32.g11442 Utricularia gibba HOM05D004997 ORTHO05D005921 9.8e-52 206.8 126 87.3
AL1G43880 Arabidopsis lyrata HOM05D004997 ORTHO05D005921 1.3e-51 206.5 129 83.7
MELO3C002717.2 Cucumis melo HOM05D004997 ORTHO05D005921 1.3e-51 206.5 129 86.8
MD05G1284500 Malus domestica HOM05D004997 ORTHO05D005921 1.3e-51 206.5 129 86.8
MD10G1262900 Malus domestica HOM05D004997 ORTHO05D005921 1.3e-51 206.5 129 87.6
Nn4g24866 Nelumbo nucifera HOM05D004997 ORTHO05D005921 1.3e-51 206.5 129 86.8
TAR626G0896 Trochodendron aralioides HOM05D004997 ORTHO05D005921 1.3e-51 206.5 129 85.3
Gohir.A05G148700 Gossypium hirsutum HOM05D004997 ORTHO05D005921 1.7e-51 206.1 129 87.6
THA.LOC104812669 Tarenaya hassleriana HOM05D004997 ORTHO05D005921 1.7e-51 206.1 129 84.5
GSVIVG01021444001 Vitis vinifera HOM05D004997 ORTHO05D005921 2.2e-51 205.7 125 87.2
CiPaw.10G092400 Carya illinoinensis HOM05D004997 ORTHO05D005921 2.8e-51 205.3 129 84.5
HanXRQChr11g0340951 Helianthus annuus HOM05D004997 ORTHO05D005921 2.8e-51 205.3 125 87.2
arahy.Tifrunner.gnm1.ann1.06CE9J Arachis hypogaea HOM05D004997 ORTHO05D005921 6.3e-51 204.1 136 84.6
CiPaw.09G124400 Carya illinoinensis HOM05D004997 ORTHO05D005921 6.3e-51 204.1 129 83.7
Sp1g25870 Schrenkiella parvula HOM05D004997 ORTHO05D005921 6.3e-51 204.1 129 84.5
Aqoxy3G00593 Aquilegia oxysepala HOM05D004997 ORTHO05D005921 8.3e-51 203.8 129 83.7
Prupe.4G079900 Prunus persica HOM05D004997 ORTHO05D005921 8.3e-51 203.8 129 85.3
Sed0005528 Sechium edule HOM05D004997 ORTHO05D005921 1.4e-50 203.0 129 85.3
SGA_v2.0_scaffold333G48998 Striga asiatica HOM05D004997 ORTHO05D005921 4.1e-50 201.4 138 81.2
HanXRQChr01g0020611 Helianthus annuus HOM05D004997 ORTHO05D005921 1.2e-49 199.9 129 86.0
Gorai.002G185400 Gossypium raimondii HOM05D004997 ORTHO05D005921 2.0e-49 199.1 129 85.3
BcaB07g32600 Brassica carinata HOM05D004997 ORTHO05D005921 2.7e-49 198.7 129 81.4
BcaC06g35482 Brassica carinata HOM05D004997 ORTHO05D005921 2.7e-49 198.7 129 81.4
A09p36530 Brassica napus HOM05D004997 ORTHO05D005921 2.7e-49 198.7 129 81.4
BolC7t42045H Brassica oleracea HOM05D004997 ORTHO05D005921 2.7e-49 198.7 129 81.4
BraA09t39174Z Brassica rapa HOM05D004997 ORTHO05D005921 2.7e-49 198.7 129 81.4
Thhalv10009093m.g Eutrema salsugineum HOM05D004997 ORTHO05D005921 2.7e-49 198.7 129 82.9
TPR.G13287 Trifolium pratense HOM05D004997 ORTHO05D005921 3.5e-49 198.4 112 94.6
C05p28750 Brassica napus HOM05D004997 ORTHO05D005921 1.0e-48 196.8 129 80.6
BolC5t31593H Brassica oleracea HOM05D004997 ORTHO05D005921 1.0e-48 196.8 129 80.6
FAN25G0101 Fragaria x ananassa HOM05D004997 ORTHO05D005921 1.5e-47 193.0 142 77.5
Manes.11G058500 Manihot esculenta HOM05D004997 ORTHO05D005921 9.5e-47 190.3 111 91.9
BcaB03g13847 Brassica carinata HOM05D004997 ORTHO05D005921 2.1e-46 189.1 129 79.8
Atru.chr10.1243 Acer truncatum HOM05D004997 ORTHO05D005921 2.8e-46 188.7 111 91.9
PGR042G1500 Punica granatum HOM05D004997 ORTHO05D005921 6.1e-46 187.6 129 79.1
CDE09G0791 Ceratophyllum demersum HOM05D004997 ORTHO05D005921 8.0e-46 187.2 127 77.2
HPP92_006252 Vanilla planifolia HOM05D004997 ORTHO05D005921 1.8e-45 186.0 129 74.4
CDE02G0055 Ceratophyllum demersum HOM05D004997 ORTHO05D005921 8.9e-45 183.7 127 75.6
SEGI_33388 Sequoiadendron giganteum HOM05D004997 ORTHO05D005921 8.9e-45 183.7 130 75.4
A07p10100 Brassica napus HOM05D004997 ORTHO05D005921 2.0e-44 182.6 133 76.7
Gohir.D01G100600 Gossypium hirsutum HOM05D004997 ORTHO05D005921 2.6e-44 182.2 120 84.2
ClCG03G007080 Citrullus lanatus HOM05D004997 ORTHO05D005921 3.4e-44 181.8 184 60.3
Ah.09g232610 Amaranthus hybridus HOM05D000413 ORTHO05D000292 5.8e-44 181.0 109 88.1
Duzib235G0692 Durio zibethinus HOM05D004997 ORTHO05D005921 5.8e-44 181.0 110 88.2
Lsat_1_v5_gn_1_91801 Lactuca sativa HOM05D004997 ORTHO05D005921 7.5e-44 180.6 106 90.6
Gorai.002G125400 Gossypium raimondii HOM05D004997 ORTHO05D005921 1.3e-43 179.9 120 83.3
Hund21531 Selenicereus undatus HOM05D004997 ORTHO05D005921 1.7e-43 179.5 107 88.8
arahy.Tifrunner.gnm1.ann1.FF119L Arachis hypogaea HOM05D004997 ORTHO05D005921 2.2e-43 179.1 117 85.5
CsaV3_1G032650 Cucumis sativus L. HOM05D004997 ORTHO05D005921 8.3e-43 177.2 111 83.8
Rhsim13G0211800 Rhododendron simsii HOM05D004997 ORTHO05D005921 1.1e-42 176.8 104 91.3
CSS0046404 Camellia sinensis var. sinensis HOM05D004997 ORTHO05D005921 1.9e-42 176.0 105 89.5
CAN.G134.135 Capsicum annuum HOM05D004997 ORTHO05D000105 1.9e-42 176.0 109 83.5
MBI07_g26358_MAGBIO Magnolia biondii HOM05D004997 ORTHO05D005921 1.9e-42 176.0 108 85.2
DCAR_027919 Daucus carota HOM05D000413 ORTHO05D000292 2.4e-42 175.6 123 79.7
Os02g0246300 Oryza sativa ssp. japonica HOM05D004997 ORTHO05D005921 4.1e-42 174.9 119 73.9
Prupe.3G104900 Prunus persica HOM05D004997 ORTHO05D005921 1.6e-41 172.9 105 87.6
BcaC05g27010 Brassica carinata HOM05D004997 ORTHO05D005921 2.0e-41 172.6 111 81.1
CAN.G134.136 Capsicum annuum HOM05D004997 ORTHO05D005921 4.6e-41 171.4 109 81.7
FAN16G0953 Fragaria x ananassa HOM05D004997 ORTHO05D005921 1.3e-40 169.9 105 85.7
BraA07t28803Z Brassica rapa HOM05D004997 ORTHO05D005921 6.6e-40 167.5 118 76.3
Cc02_g37190 Coffea canephora HOM05D004997 ORTHO05D005921 8.6e-40 167.2 104 83.7
QL05p058391 Quercus lobata HOM05D004997 ORTHO05D005921 8.6e-40 167.2 127 74.8
ATR0743G157 Amborella trichopoda HOM05D004997 ORTHO05D005921 2.1e-38 162.5 111 77.5
Pp3c22_1770 Physcomitrium patens HOM05D004997 ORTHO05D005921 1.4e-37 159.8 124 65.3
EL10Ac8g19712 Beta vulgaris HOM05D004997 ORTHO05D005921 3.1e-37 158.7 162 59.3
Aa31LG6G5670 Aethionema arabicum HOM05D004997 ORTHO05D005921 5.2e-37 157.9 131 68.7
C07p15580 Brassica napus HOM05D004997 ORTHO05D005921 8.9e-37 157.1 118 72.9
arahy.Tifrunner.gnm1.ann1.7IX92P Arachis hypogaea HOM05D004997 ORTHO05D005921 1.2e-36 156.8 89 93.3
Mapoly0006s0079 Marchantia polymorpha HOM05D004997 ORTHO05D005921 1.2e-36 156.8 122 66.4
vmacro04021 Vaccinium macrocarpon HOM05D004997 ORTHO05D005921 1.5e-36 156.4 87 93.1
COL.COLO4_31081 Corchorus olitorius HOM05D004997 ORTHO05D005921 5.8e-36 154.5 87 92.0
PGSC0003DMG400009647 Solanum tuberosum HOM05D004997 ORTHO05D005921 5.8e-36 154.5 90 87.8
Oeu034156.1 Olea europaea HOM05D004997 ORTHO05D005921 9.8e-36 153.7 90 88.9
Dinv30737 Davidia involucrata HOM05D004997 ORTHO05D005921 2.2e-35 152.5 90 91.1
Zm00001eb238610 Zea mays HOM05D004997 ORTHO05D005921 2.9e-35 152.1 119 68.9
Oeu052376.1 Olea europaea HOM05D004997 ORTHO05D005921 4.9e-35 151.4 90 86.7
AUR62039776 Chenopodium quinoa HOM05D004997 ORTHO05D005921 8.3e-35 150.6 84 92.9
AagrBONN_evm.TU.Sc2ySwM_344.2433 Anthoceros agrestis HOM05D004997 ORTHO05D005921 1.1e-34 150.2 124 61.3
Phvul.009G128800 Phaseolus vulgaris HOM05D004997 ORTHO05D005921 2.4e-34 149.1 87 92.0
Sc17g0004940 Simmondsia chinensis HOM05D004997 ORTHO05D005921 4.1e-34 148.3 90 85.6
SMO367G0874 Selaginella moellendorffii HOM05D004997 ORTHO05D005921 2.1e-33 146.0 107 66.4
QL06p022817 Quercus lobata HOM05D004997 ORTHO05D005921 3.5e-33 145.2 111 76.6
Peaxi162Scf01211g00142 Petunia axillaris HOM05D004997 ORTHO05D005921 6.0e-33 144.4 88 88.6
CAN.G3523.1 Capsicum annuum HOM05D004997 ORTHO05D005921 3.9e-32 141.7 90 81.1
CAN.G134.137 Capsicum annuum HOM05D004997 ORTHO05D005921 6.6e-32 141.0 93 78.5
SEGI_19850 Sequoiadendron giganteum HOM05D004997 ORTHO05D005921 3.3e-31 138.7 91 80.2
Actinidia39569 Actinidia chinensis HOM05D004997 ORTHO05D005921 5.6e-31 137.9 129 65.1
Gohir.D01G149300 Gossypium hirsutum HOM05D004997 ORTHO05D005921 1.1e-29 133.7 95 80.0
SalBow8G3614 Salvia bowleyana HOM05D004997 ORTHO05D005921 4.0e-29 131.7 100 74.0
Lsat_1_v5_gn_5_30841 Lactuca sativa HOM05D004997 ORTHO05D005921 1.4e-26 123.2 71 88.7
Haze_05586 Corylus avellana HOM05D004997 ORTHO05D005921 4.6e-25 118.2 77 84.4
Nitab4.5_0000348g0240 Nicotiana tabacum HOM05D004997 ORTHO05D005921 1.0e-24 117.1 65 90.8
CDE02G2003 Ceratophyllum demersum HOM05D004997 ORTHO05D005921 1.3e-24 116.7 70 87.1
Nitab4.5_0010327g0020 Nicotiana tabacum HOM05D004997 ORTHO05D005921 1.3e-24 116.7 90 72.2
AUR62030207 Chenopodium quinoa HOM05D004997 ORTHO05D005921 2.1e-22 109.4 61 93.4
Sabra04G0085700 Salix brachista HOM05D004997 ORTHO05D005921 1.4e-21 106.7 63 87.3
PRCOL_00000028 Prasinoderma coloniale HOM05D004997 ORTHO05D005921 8.9e-21 104.0 116 48.3
Manes.09G021201 Manihot esculenta HOM05D004997 ORTHO05D005921 6.4e-19 97.8 109 57.8
Zm00001eb258640 Zea mays HOM05D004997 ORTHO05D005921 1.4e-18 96.7 67 71.6
Zm00001eb151600 Zea mays HOM05D000394 ORTHO05D016690 3.2e-18 95.5 64 75.0
MCO01G210 Micromonas commoda HOM05D004997 ORTHO05D005921 4.2e-18 95.1 121 42.1
Zm00001eb310800 Zea mays HOM05D000394 ORTHO05D016690 9.2e-18 94.0 64 73.4
Zm00001eb139040 Zea mays HOM05D000901 ORTHO05D005921 1.2e-17 93.6 77 64.9
Zm00001eb225310 Zea mays HOM05D000901 ORTHO05D005921 1.0e-16 90.5 63 73.0
Zm00001eb269380 Zea mays HOM05D000901 ORTHO05D005921 1.0e-16 90.5 65 72.3
Zm00001eb344510 Zea mays HOM05D000901 ORTHO05D000768 1.1e-15 87.0 65 69.2
Haze_05599 Corylus avellana HOM05D004997 ORTHO05D005921 5.6e-15 84.7 51 88.2
Cre12.g502750 Chlamydomonas reinhardtii HOM05D004997 ORTHO05D005921 2.1e-14 82.8 112 42.9
Cfa022129 Carpinus fangiana HOM05D004997 ORTHO05D005921 3.8e-11 72.0 123 35.0
CBR_g48714 Chara braunii HOM05D004997 ORTHO05D005921 5.1e-08 61.6 119 35.3
arahy.Tifrunner.gnm1.ann1.MPJ1GQ Arachis hypogaea HOM05D004997 ORTHO05D005921 6.6e-08 61.2 51 66.7


User provided reference genes

Program Settings