Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0010123 Lotus japonicus HOM05D004018 ORTHO05D004408 1.6e-293 1012.3 626 100.0
Ca_09771_v3 Cicer arietinum L. HOM05D004018 ORTHO05D004408 2.7e-179 632.9 620 60.3
Phvul.007G169800 Phaseolus vulgaris HOM05D004018 ORTHO05D004408 3.0e-170 602.8 628 59.7
VMungo0720G2698 Vigna mungo HOM05D004018 ORTHO05D004408 3.3e-161 572.8 628 57.6
TPR.G1562 Trifolium pratense HOM05D004018 ORTHO05D004408 1.3e-154 550.8 665 52.8
Medtr1g072560 Medicago truncatula HOM05D004018 ORTHO05D004408 6.2e-152 542.0 688 50.9
Lalb_Chr21g0306531 Lupinus albus HOM05D004018 ORTHO05D004408 8.1e-144 515.0 645 55.8
Glyma.02G148900 Glycine max HOM05D004018 ORTHO05D004408 6.4e-141 505.4 619 55.6
Psat6g061120 Pisum sativum HOM05D004018 ORTHO05D004408 4.6e-139 499.2 718 47.1
Lalb_Chr02g0142861 Lupinus albus HOM05D004018 ORTHO05D004408 1.6e-131 474.2 665 49.3
arahy.Tifrunner.gnm1.ann1.6Q7DFN Arachis hypogaea HOM05D004018 ORTHO05D004408 1.9e-129 467.2 680 48.2
Glyma.10G025000 Glycine max HOM05D004018 ORTHO05D004408 1.4e-124 451.1 583 54.5
arahy.Tifrunner.gnm1.ann1.BX9H6P Arachis hypogaea HOM05D004018 ORTHO05D004408 3.2e-124 449.9 675 47.3
Cfa006111 Carpinus fangiana HOM05D004018 ORTHO05D004408 1.4e-98 364.8 659 42.3
Duzib138G0587 Durio zibethinus HOM05D004018 ORTHO05D004408 3.1e-95 353.6 643 40.7
Thecc.01G282900 Theobroma cacao HOM05D004018 ORTHO05D004408 3.4e-94 350.1 645 42.9
Haze_04739 Corylus avellana HOM05D004018 ORTHO05D004408 1.3e-93 348.2 698 40.3
Gorai.008G005300 Gossypium raimondii HOM05D004018 ORTHO05D004408 8.5e-93 345.5 629 40.7
Gohir.A12G005900 Gossypium hirsutum HOM05D004018 ORTHO05D004408 3.2e-92 343.6 627 40.4
TWI14G0752 Tripterygium wilfordii HOM05D004018 ORTHO05D004408 5.2e-90 336.3 691 38.6
COL.COLO4_09133 Corchorus olitorius HOM05D004018 ORTHO05D004408 8.8e-90 335.5 640 41.2
Duzib133G0055 Durio zibethinus HOM05D004018 ORTHO05D004408 4.4e-89 333.2 653 40.0
Gohir.D12G005400 Gossypium hirsutum HOM05D004018 ORTHO05D004408 4.4e-89 333.2 636 39.6
TAR633G0135 Trochodendron aralioides HOM05D004018 ORTHO05D004408 5.7e-89 332.8 630 41.1
FAN20G3038 Fragaria x ananassa HOM05D000644 ORTHO05D004408 1.3e-88 331.6 635 41.1
TWI59G1189 Tripterygium wilfordii HOM05D004018 ORTHO05D004408 1.7e-88 331.3 698 40.7
TAR365G0909 Trochodendron aralioides HOM05D004018 ORTHO05D004408 3.7e-88 330.1 629 39.9
Gohir.A08G185500 Gossypium hirsutum HOM05D004018 ORTHO05D004408 4.1e-87 326.6 622 41.3
TAR365G0933 Trochodendron aralioides HOM05D004018 ORTHO05D004408 7.0e-87 325.9 624 39.4
RcHm_v2.0_Chr6g0291481 Rosa chinensis HOM05D004018 ORTHO05D004408 3.5e-86 323.6 650 42.0
CiPaw.07G093900 Carya illinoinensis HOM05D004018 ORTHO05D004408 1.3e-85 321.6 678 42.3
QL12p022414 Quercus lobata HOM05D004018 ORTHO05D004408 5.0e-85 319.7 665 37.9
FAN24G0467 Fragaria x ananassa HOM05D000644 ORTHO05D004408 2.5e-84 317.4 633 41.7
FvH4_2g23870 Fragaria vesca HOM05D004018 ORTHO05D004408 1.2e-83 315.1 633 42.3
Potri.014G139000 Populus trichocarpa HOM05D004018 ORTHO05D004408 2.7e-83 313.9 619 38.9
CANSAT25G1423 Cannabis sativa HOM05D004018 ORTHO05D004408 3.6e-83 313.5 640 38.4
Gorai.004G215600 Gossypium raimondii HOM05D004018 ORTHO05D004408 6.1e-83 312.8 590 40.0
GSVIVG01011103001 Vitis vinifera HOM05D004018 ORTHO05D004408 8.0e-83 312.4 681 37.3
FAN27G0494 Fragaria x ananassa HOM05D000644 ORTHO05D004408 1.0e-82 312.0 633 42.3
Prupe.8G244100 Prunus persica HOM05D004018 ORTHO05D004408 1.0e-82 312.0 629 38.3
Atru.chr5.1370 Acer truncatum HOM05D004018 ORTHO05D004408 4.0e-82 310.1 690 37.0
vmacro02552 Vaccinium macrocarpon HOM05D004018 ORTHO05D004408 5.2e-82 309.7 670 38.7
FAN15G3429 Fragaria x ananassa HOM05D000644 ORTHO05D004408 2.6e-81 307.4 647 44.0
Nn4g26185 Nelumbo nucifera HOM05D004018 ORTHO05D004408 3.3e-81 307.0 619 40.1
Actinidia09153 Actinidia chinensis HOM05D004018 ORTHO05D004408 3.7e-80 303.5 670 37.8
Oeu028079.1 Olea europaea HOM05D004018 ORTHO05D004408 8.2e-80 302.4 645 36.4
Ciclev10018884m.g Citrus clementina HOM05D004018 ORTHO05D004408 2.4e-79 300.8 815 33.0
Manes.01G209500 Manihot esculenta HOM05D004018 ORTHO05D004408 9.1e-79 298.9 654 39.9
Nitab4.5_0001028g0170 Nicotiana tabacum HOM05D004018 ORTHO05D004408 1.2e-78 298.5 653 37.1
Nitab4.5_0011633g0010 Nicotiana tabacum HOM05D004018 ORTHO05D004408 4.5e-78 296.6 653 38.1
CSS0042185 Camellia sinensis var. sinensis HOM05D004018 ORTHO05D004408 1.0e-77 295.4 320 55.9
THA.LOC104801219 Tarenaya hassleriana HOM05D004018 ORTHO05D004408 2.9e-77 293.9 624 37.0
Gohir.D08G203601 Gossypium hirsutum HOM05D004018 ORTHO05D004408 1.5e-76 291.6 300 64.0
Hma1.2p1_0628F.1_g191955 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 1.5e-76 291.6 668 39.8
Rhsim13G0022700 Rhododendron simsii HOM05D000644 ORTHO05D004408 5.5e-76 289.7 633 38.7
MSTRG.12568 Avicennia marina HOM05D004018 ORTHO05D004408 9.4e-76 288.9 659 38.5
Sopen09g026560 Solanum pennellii HOM05D004018 ORTHO05D004408 2.1e-75 287.7 649 35.7
MD03G1268400 Malus domestica HOM05D004018 ORTHO05D004408 8.0e-75 285.8 610 36.6
Solyc09g064860.3 Solanum lycopersicum HOM05D004018 ORTHO05D004408 1.0e-74 285.4 651 35.8
TAR636G0803 Trochodendron aralioides HOM05D004018 ORTHO05D004408 1.8e-74 284.6 627 36.5
Peaxi162Scf00570g00314 Petunia axillaris HOM05D004018 ORTHO05D004408 6.3e-72 276.2 676 36.1
PSO170G1481 Papaver somniferum HOM05D004018 ORTHO05D004408 1.8e-71 274.6 631 35.3
Sp6g02920 Schrenkiella parvula HOM05D004018 ORTHO05D004408 1.8e-71 274.6 627 35.1
MD11G1289200 Malus domestica HOM05D004018 ORTHO05D004408 2.4e-71 274.2 364 49.2
BolC3t16038H Brassica oleracea HOM05D004018 ORTHO05D004408 3.1e-71 273.9 621 39.9
Aqoxy2G03257 Aquilegia oxysepala HOM05D004018 ORTHO05D004408 4.1e-71 273.5 656 35.2
PSO407G0422 Papaver somniferum HOM05D004018 ORTHO05D004408 7.0e-71 272.7 631 36.1
AT4G02880 Arabidopsis thaliana HOM05D004018 ORTHO05D004408 2.7e-70 270.8 629 35.5
Sp1g02290 Schrenkiella parvula HOM05D004018 ORTHO05D004408 2.7e-70 270.8 636 35.1
AL6G50040 Arabidopsis lyrata HOM05D004018 ORTHO05D004408 1.0e-69 268.9 624 38.0
Carub.0006s3419 Capsella rubella HOM05D004018 ORTHO05D004408 1.0e-69 268.9 628 35.2
SalBow6G7233 Salvia bowleyana HOM05D004018 ORTHO05D004408 1.0e-69 268.9 644 37.4
Eucgr.H01516 Eucalyptus grandis HOM05D004018 ORTHO05D004408 5.0e-69 266.5 582 38.3
CARHR002590 Cardamine hirsuta HOM05D004018 ORTHO05D004408 1.9e-68 264.6 624 36.7
Oeu047882.1 Olea europaea HOM05D004018 ORTHO05D004408 1.9e-68 264.6 631 36.8
Sed0023986 Sechium edule HOM05D004018 ORTHO05D004408 2.5e-68 264.2 654 34.4
AT1G03290 Arabidopsis thaliana HOM05D004018 ORTHO05D004408 3.2e-68 263.8 623 36.0
C03p37460 Brassica napus HOM05D004018 ORTHO05D004408 3.2e-68 263.8 621 39.6
Thhalv10007330m.g Eutrema salsugineum HOM05D004018 ORTHO05D004408 3.2e-68 263.8 626 35.1
CARHR251270 Cardamine hirsuta HOM05D004018 ORTHO05D004408 4.2e-68 263.5 630 34.8
Migut.N02157 Erythranthe guttata HOM05D004018 ORTHO05D004408 5.5e-68 263.1 601 39.6
C02p39650 Brassica napus HOM05D004018 ORTHO05D004408 7.2e-68 262.7 350 48.0
Actinidia00738 Actinidia chinensis HOM05D004018 ORTHO05D004408 1.6e-67 261.5 258 58.5
AL1G12800 Arabidopsis lyrata HOM05D004018 ORTHO05D004408 2.1e-67 261.2 622 35.4
BraA02t07491Z Brassica rapa HOM05D004018 ORTHO05D004408 2.1e-67 261.2 624 33.7
BraA03t12255Z Brassica rapa HOM05D004018 ORTHO05D004408 2.1e-67 261.2 617 38.7
Carub.0001s0240 Capsella rubella HOM05D004018 ORTHO05D004408 3.6e-67 260.4 623 36.4
A02p25020 Brassica napus HOM05D004018 ORTHO05D004408 6.1e-67 259.6 624 33.7
SalBow4G1908 Salvia bowleyana HOM05D004018 ORTHO05D004408 1.0e-66 258.8 577 36.6
A03p30760 Brassica napus HOM05D004018 ORTHO05D004408 1.4e-66 258.5 620 39.4
Cc01_g19730 Coffea canephora HOM05D004018 ORTHO05D004408 4.0e-66 256.9 651 38.6
BolC2t09981H Brassica oleracea HOM05D004018 ORTHO05D004408 2.0e-65 254.6 620 36.5
Cpa.g.sc837.2 Carica papaya HOM05D004018 ORTHO05D004408 4.4e-65 253.4 275 57.1
BcaC03g16187 Brassica carinata HOM05D004018 ORTHO05D004408 7.5e-65 252.7 621 32.9
CiPaw.08G103600 Carya illinoinensis HOM05D004018 ORTHO05D004408 9.8e-65 252.3 761 32.1
TAR362G1233 Trochodendron aralioides HOM05D004018 ORTHO05D004408 8.3e-64 249.2 522 39.8
PGR044G1283 Punica granatum HOM05D004018 ORTHO05D004408 1.4e-63 248.4 644 34.2
SGA_v2.0_scaffold258G45767 Striga asiatica HOM05D004018 ORTHO05D004408 3.1e-63 247.3 669 35.9
ClCG09G006910 Citrullus lanatus HOM05D004018 ORTHO05D004408 4.1e-63 246.9 650 33.4
Aa31LG1G9250 Aethionema arabicum HOM05D004018 ORTHO05D004408 1.6e-62 245.0 642 33.2
BcaC05g24644 Brassica carinata HOM05D004018 ORTHO05D004408 2.0e-62 244.6 627 34.6
MELO3C015856.2 Cucumis melo HOM05D004018 ORTHO05D004408 2.0e-62 244.6 672 32.3
Migut.D00269 Erythranthe guttata HOM05D004018 ORTHO05D004408 1.3e-61 241.9 628 33.6
Sed0026091 Sechium edule HOM05D004018 ORTHO05D004408 8.6e-61 239.2 335 45.1
C05p01820 Brassica napus HOM05D003188 ORTHO05D003602 2.5e-60 237.7 643 34.4
ECA248G1820 Erigeron canadensis HOM05D004018 ORTHO05D004408 2.1e-59 234.6 651 33.3
Lj2A1177T38 Lonicera japonica HOM05D004018 ORTHO05D004408 3.6e-59 233.8 541 34.2
MSTRG.18219 Avicennia marina HOM05D004018 ORTHO05D004408 4.7e-59 233.4 419 41.1
CsaV3_7G028620 Cucumis sativus L. HOM05D004018 ORTHO05D004408 8.0e-59 232.6 653 35.5
Thhalv10028568m.g Eutrema salsugineum HOM05D004018 ORTHO05D004408 8.0e-59 232.6 620 34.0
DCAR_002748 Daucus carota HOM05D004018 ORTHO05D004408 2.3e-58 231.1 651 32.1
BraA10t42458Z Brassica rapa HOM05D004018 ORTHO05D004408 3.4e-57 227.3 630 35.4
BolC5t28960H Brassica oleracea HOM05D003188 ORTHO05D003602 7.5e-57 226.1 642 33.2
DCAR_018413 Daucus carota HOM05D004018 ORTHO05D004408 2.9e-56 224.2 679 32.0
Eucgr.K03388 Eucalyptus grandis HOM05D004018 ORTHO05D004408 6.4e-56 223.0 634 31.4
VMungo0720G2446 Vigna mungo HOM05D004018 ORTHO05D004408 1.2e-54 218.8 346 44.8
HanXRQChr01g0002351 Helianthus annuus HOM05D004018 ORTHO05D004408 7.8e-54 216.1 648 33.0
AUR62036814 Chenopodium quinoa HOM05D004018 ORTHO05D004408 1.2e-51 208.8 656 30.8
DCAR_012464 Daucus carota HOM05D000644 ORTHO05D000504 1.2e-51 208.8 651 34.9
A10p01840 Brassica napus HOM05D003188 ORTHO05D003602 2.8e-51 207.6 646 32.0
AUR62033708 Chenopodium quinoa HOM05D004018 ORTHO05D004408 4.7e-51 206.8 655 30.5
Hund28856 Selenicereus undatus HOM05D004018 ORTHO05D004408 1.4e-50 205.3 274 48.2
Hund28858 Selenicereus undatus HOM05D004018 ORTHO05D004408 1.4e-50 205.3 274 48.2
HanXRQChr11g0327641 Helianthus annuus HOM05D004018 ORTHO05D004408 3.1e-50 204.1 643 31.7
Dinv11250 Davidia involucrata HOM05D004018 ORTHO05D004408 6.8e-50 203.0 467 38.3
BcaC05g24546 Brassica carinata HOM05D004018 ORTHO05D004408 7.0e-47 193.0 268 46.3
Sabra02G0167700 Salix brachista HOM05D004018 ORTHO05D004408 1.2e-46 192.2 448 35.3
Sc24g0004120 Simmondsia chinensis HOM05D004018 ORTHO05D004408 4.6e-46 190.3 469 36.0
HPP92_003154 Vanilla planifolia HOM05D004018 ORTHO05D004408 1.7e-45 188.3 574 31.7
Sabra14G0104800 Salix brachista HOM05D004018 ORTHO05D004408 7.3e-44 183.0 441 32.4
Atru.chr12.487 Acer truncatum HOM05D004018 ORTHO05D004408 2.1e-43 181.4 225 51.6
Atru.chr12.465 Acer truncatum HOM05D004018 ORTHO05D004408 2.8e-43 181.0 225 51.6
ATR0626G273 Amborella trichopoda HOM05D004018 ORTHO05D004408 8.1e-43 179.5 653 30.2
SGA_v2.0_scaffold11G05799 Striga asiatica HOM05D004018 ORTHO05D004408 1.8e-42 178.3 617 29.5
Lsat_1_v5_gn_5_187400 Lactuca sativa HOM05D004018 ORTHO05D004408 1.2e-41 175.6 649 31.1
Zm00001eb287880 Zea mays HOM05D004018 ORTHO05D004408 4.4e-41 173.7 297 38.4
EL10Ac7g17209 Beta vulgaris HOM05D004018 ORTHO05D004408 7.5e-41 172.9 630 28.9
CDE05G3031 Ceratophyllum demersum HOM05D004018 ORTHO05D004408 3.5e-38 164.1 571 28.5
Zm00001eb349530 Zea mays HOM05D004018 ORTHO05D004408 1.8e-34 151.8 631 27.4
Pp3c15_12690 Physcomitrium patens HOM05D004018 ORTHO05D004408 1.5e-33 148.7 242 36.4
ECA236G3018 Erigeron canadensis HOM05D004018 ORTHO05D004408 7.6e-33 146.4 274 36.5
MBI17_g12005_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 1.7e-32 145.2 581 27.9
Dinv11249 Davidia involucrata HOM05D004018 ORTHO05D004408 2.2e-32 144.8 172 64.0
Os10g0315400 Oryza sativa ssp. japonica HOM05D004018 ORTHO05D004408 9.2e-31 139.4 281 35.2
CARHR005950 Cardamine hirsuta HOM05D004018 ORTHO05D004408 3.3e-28 131.0 351 34.2
unitig_0.g1008 Utricularia gibba HOM05D004018 ORTHO05D004408 5.6e-28 130.2 572 32.2
Mapoly0005s0053 Marchantia polymorpha HOM05D004018 ORTHO05D004408 9.6e-28 129.4 270 34.1
HanXRQChr04g0118801 Helianthus annuus HOM05D004018 ORTHO05D004408 1.5e-25 122.1 269 34.6
Pp3c9_12210 Physcomitrium patens HOM05D004018 ORTHO05D004408 9.9e-25 119.4 275 31.3
HanXRQChr03g0063751 Helianthus annuus HOM05D004018 ORTHO05D004408 8.7e-21 106.3 223 44.4
ECA236G2562 Erigeron canadensis HOM05D004018 ORTHO05D004408 1.5e-20 105.5 236 44.5
ECA236G2305 Erigeron canadensis HOM05D004018 ORTHO05D004408 2.5e-20 104.8 185 36.8
MD11G1124600 Malus domestica HOM05D004018 ORTHO05D004408 1.1e-18 99.4 79 68.4
SMO364G0006 Selaginella moellendorffii HOM05D004018 ORTHO05D004408 1.8e-18 98.6 335 27.8
BcaC03g15959 Brassica carinata HOM05D004018 ORTHO05D004408 3.4e-17 94.4 96 56.2
C02p37230 Brassica napus HOM05D004018 ORTHO05D004408 7.6e-17 93.2 91 54.9
ECA247G3795 Erigeron canadensis HOM05D004018 ORTHO05D004408 1.1e-15 89.4 138 39.1
HanXRQChr03g0063801 Helianthus annuus HOM05D004018 ORTHO05D004408 1.9e-15 88.6 138 39.1
Ah.08g213040 Amaranthus hybridus HOM05D004018 ORTHO05D004408 2.1e-14 85.1 122 44.3
BolC2t09733H Brassica oleracea HOM05D004018 ORTHO05D004408 1.8e-13 82.0 57 68.4
Gohir.D01G114520 Gossypium hirsutum HOM05D004018 ORTHO05D004408 3.0e-13 81.3 98 50.0
AagrBONN_evm.TU.Sc2ySwM_228.3859 Anthoceros agrestis HOM05D004018 ORTHO05D004408 8.7e-13 79.7 488 23.6
Gorai.007G029100 Gossypium raimondii HOM05D004018 ORTHO05D004408 1.5e-12 79.0 74 56.8
BcaC05g24545 Brassica carinata HOM05D001026 ORTHO05D007776 1.6e-11 75.5 71 56.3
Gohir.D06G055550 Gossypium hirsutum HOM05D004018 ORTHO05D004408 2.4e-10 71.6 105 44.8
Sp2g28160 Schrenkiella parvula HOM05D008017 ORTHO05D009829 2.0e-09 68.6 67 52.2
Hund17963 Selenicereus undatus HOM05D004018 ORTHO05D004408 2.6e-09 68.2 52 61.5
HanXRQChr03g0063771 Helianthus annuus HOM05D004018 ORTHO05D004408 5.8e-09 67.0 174 32.2
C03p61050 Brassica napus HOM05D008017 ORTHO05D009829 7.6e-09 66.6 46 65.2
BolC3t18367H Brassica oleracea HOM05D008017 ORTHO05D009829 7.6e-09 66.6 46 65.2
CBR_g40749 Chara braunii HOM05D004018 ORTHO05D004408 7.6e-09 66.6 203 25.6
BraA06t26123Z Brassica rapa HOM05D008017 ORTHO05D009829 1.3e-08 65.9 46 65.2
Peaxi162Scf00145g00517 Petunia axillaris HOM05D004018 ORTHO05D004408 2.2e-08 65.1 119 39.5
Gorai.013G189300 Gossypium raimondii HOM05D004018 ORTHO05D004408 2.9e-08 64.7 109 39.4
Hma1.2p1_0118F.1_g056525 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 2.9e-08 64.7 52 59.6
Hma1.2p1_0118F.1_g056540 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 2.9e-08 64.7 52 59.6
A06p31900 Brassica napus HOM05D008017 ORTHO05D009829 3.8e-08 64.3 46 65.2
AT5G64980 Arabidopsis thaliana HOM05D008017 ORTHO05D009829 1.1e-07 62.8 52 55.8
AL8G42480 Arabidopsis lyrata HOM05D008017 ORTHO05D009829 1.4e-07 62.4 77 44.2
Carub.0008s2581 Capsella rubella HOM05D008017 ORTHO05D009829 1.9e-07 62.0 82 41.5
CARHR293790 Cardamine hirsuta HOM05D004018 ORTHO05D009829 2.4e-07 61.6 81 40.7
PGR031G1662 Punica granatum HOM05D004018 ORTHO05D004408 2.4e-07 61.6 101 39.6


User provided reference genes

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