Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0009668 Lotus japonicus HOM05D003524 ORTHO05D003988 7.9e-52 206.8 105 100.0
Lj5g0020130 Lotus japonicus HOM05D003524 ORTHO05D003988 9.7e-50 199.9 105 96.2
Lj1g0009607 Lotus japonicus HOM05D003524 ORTHO05D003988 4.1e-48 194.5 106 94.3
Haze_21415 Corylus avellana HOM05D003524 ORTHO05D003988 5.1e-35 151.0 105 73.3
Haze_21413 Corylus avellana HOM05D003524 ORTHO05D003988 1.5e-34 149.4 104 72.1
Cfa013050 Carpinus fangiana HOM05D003524 ORTHO05D003988 2.2e-33 145.6 102 72.5
Eucgr.L02917 Eucalyptus grandis HOM05D003524 ORTHO05D003988 2.2e-33 145.6 102 73.5
THA.LOC104803862 Tarenaya hassleriana HOM05D003524 ORTHO05D003988 8.2e-33 143.7 105 66.7
Ca_13066_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 1.1e-32 143.3 102 70.6
TPR.G38873 Trifolium pratense HOM05D003524 ORTHO05D003988 1.4e-32 142.9 105 70.5
ClCG05G016230 Citrullus lanatus HOM05D003524 ORTHO05D003988 2.4e-32 142.1 102 69.6
Psat6g025880 Pisum sativum HOM05D003524 ORTHO05D003988 2.4e-32 142.1 105 69.5
MELO3C016955.2 Cucumis melo HOM05D003524 ORTHO05D003988 3.1e-32 141.7 103 70.9
CsaV3_4G036500 Cucumis sativus L. HOM05D003524 ORTHO05D003988 3.1e-32 141.7 103 70.9
Eucgr.C02607 Eucalyptus grandis HOM05D003524 ORTHO05D003988 3.1e-32 141.7 102 72.5
Medtr1g014110 Medicago truncatula HOM05D003524 ORTHO05D003988 5.3e-32 141.0 108 69.4
Lalb_Chr14g0361751 Lupinus albus HOM05D003524 ORTHO05D003988 9.1e-32 140.2 105 68.6
CiPaw.07G230500 Carya illinoinensis HOM05D003524 ORTHO05D003988 2.6e-31 138.7 103 68.9
PGR044G0872 Punica granatum HOM05D003524 ORTHO05D003988 2.6e-31 138.7 101 69.3
TWI34G0563 Tripterygium wilfordii HOM05D003524 ORTHO05D003988 2.6e-31 138.7 102 69.6
Lsat_1_v5_gn_4_88160 Lactuca sativa HOM05D003361 ORTHO05D003988 3.5e-31 138.3 101 67.3
A01p06450 Brassica napus HOM05D003524 ORTHO05D003988 7.7e-31 137.1 102 69.6
C01p07090 Brassica napus HOM05D003524 ORTHO05D003988 7.7e-31 137.1 102 69.6
BolC1t00701H Brassica oleracea HOM05D003524 ORTHO05D003988 7.7e-31 137.1 102 69.6
BraA01t00606Z Brassica rapa HOM05D003524 ORTHO05D003988 7.7e-31 137.1 102 69.6
CAN.G353.11 Capsicum annuum HOM05D003524 ORTHO05D003988 1.3e-30 136.3 105 68.6
Migut.A00356 Erythranthe guttata HOM05D003524 ORTHO05D003988 2.2e-30 135.6 102 66.7
Nitab4.5_0002011g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 2.2e-30 135.6 102 69.6
Peaxi162Scf00045g02028 Petunia axillaris HOM05D003524 ORTHO05D003988 2.2e-30 135.6 105 65.7
Sp7g29640 Schrenkiella parvula HOM05D003524 ORTHO05D003988 3.8e-30 134.8 102 67.6
COL.COLO4_18953 Corchorus olitorius HOM05D003524 ORTHO05D003988 5.0e-30 134.4 100 68.0
Gohir.D05G062000 Gossypium hirsutum HOM05D003524 ORTHO05D003988 5.0e-30 134.4 100 67.0
Gorai.009G063100 Gossypium raimondii HOM05D003524 ORTHO05D003988 5.0e-30 134.4 100 67.0
HanXRQChr09g0274741 Helianthus annuus HOM05D003524 ORTHO05D003988 5.0e-30 134.4 101 66.3
Solyc08g006800.3 Solanum lycopersicum HOM05D003524 ORTHO05D003988 5.0e-30 134.4 105 64.8
SGA_v2.0_scaffold22G09905 Striga asiatica HOM05D003524 ORTHO05D003988 5.0e-30 134.4 102 66.7
AT4G31830 Arabidopsis thaliana HOM05D003524 ORTHO05D003988 8.5e-30 133.7 102 67.6
CSS0001588 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 8.5e-30 133.7 104 67.3
CARHR239750 Cardamine hirsuta HOM05D003524 ORTHO05D003988 8.5e-30 133.7 102 66.7
Thhalv10026655m.g Eutrema salsugineum HOM05D003524 ORTHO05D003988 8.5e-30 133.7 102 67.6
Aa31LG2G18400 Aethionema arabicum HOM05D003524 ORTHO05D003988 1.5e-29 132.9 101 66.3
Manes.03G008400 Manihot esculenta HOM05D003524 ORTHO05D003988 1.5e-29 132.9 102 67.6
AL7G20150 Arabidopsis lyrata HOM05D003524 ORTHO05D003988 1.9e-29 132.5 102 66.7
Carub.0007s0872 Capsella rubella HOM05D003524 ORTHO05D003988 2.5e-29 132.1 102 67.6
QL02p018819 Quercus lobata HOM05D003524 ORTHO05D003988 2.5e-29 132.1 101 65.3
Nn8g39910 Nelumbo nucifera HOM05D003524 ORTHO05D003988 3.2e-29 131.7 102 67.6
Atru.chr7.2561 Acer truncatum HOM05D003524 ORTHO05D003988 4.2e-29 131.3 101 66.3
arahy.Tifrunner.gnm1.ann1.PTAL7S Arachis hypogaea HOM05D003524 ORTHO05D003988 4.2e-29 131.3 102 68.6
arahy.Tifrunner.gnm1.ann1.ZW8IXI Arachis hypogaea HOM05D003524 ORTHO05D003988 4.2e-29 131.3 102 68.6
EL10Ac2g02500 Beta vulgaris HOM05D003524 ORTHO05D003988 4.2e-29 131.3 106 64.2
BcaC01g01055 Brassica carinata HOM05D003524 ORTHO05D003988 4.2e-29 131.3 102 66.7
A08p18430 Brassica napus HOM05D003524 ORTHO05D003988 4.2e-29 131.3 102 66.7
C03p87500 Brassica napus HOM05D003524 ORTHO05D003988 4.2e-29 131.3 102 66.7
BolC3t21069H Brassica oleracea HOM05D003524 ORTHO05D003988 4.2e-29 131.3 102 66.7
Oeu009646.1 Olea europaea HOM05D003524 ORTHO05D003988 4.2e-29 131.3 102 66.7
Rhsim02G0212800 Rhododendron simsii HOM05D003524 ORTHO05D003988 5.5e-29 131.0 100 67.0
BcaC09g51975 Brassica carinata HOM05D003524 ORTHO05D003988 7.2e-29 130.6 102 66.7
Gohir.A05G059800 Gossypium hirsutum HOM05D003524 ORTHO05D003988 7.2e-29 130.6 99 65.7
BcaB03g12722 Brassica carinata HOM05D003524 ORTHO05D003988 9.4e-29 130.2 101 65.3
RcHm_v2.0_Chr6g0299391 Rosa chinensis HOM05D003524 ORTHO05D003988 1.2e-28 129.8 103 64.1
CANSAT25G3000 Cannabis sativa HOM05D003524 ORTHO05D003988 3.6e-28 128.3 101 63.4
SalBow4G2912 Salvia bowleyana HOM05D003524 ORTHO05D003988 3.6e-28 128.3 101 65.3
TAR383G0003 Trochodendron aralioides HOM05D003524 ORTHO05D003988 3.6e-28 128.3 103 65.0
Prupe.1G394000 Prunus persica HOM05D003524 ORTHO05D003988 6.1e-28 127.5 102 66.7
ECA232G2703 Erigeron canadensis HOM05D003524 ORTHO05D003988 1.0e-27 126.7 104 61.5
GSVIVG01035971001 Vitis vinifera HOM05D003524 ORTHO05D003988 5.2e-27 124.4 101 63.4
Actinidia22287 Actinidia chinensis HOM05D000091 ORTHO05D003988 6.7e-27 124.0 101 62.4
PSO339G2253 Papaver somniferum HOM05D003524 ORTHO05D003988 6.7e-27 124.0 104 62.5
PGSC0003DMG400026298 Solanum tuberosum HOM05D003524 ORTHO05D003988 1.1e-26 123.2 95 67.4
Cc08_g07120 Coffea canephora HOM05D003524 ORTHO05D003988 1.5e-26 122.9 105 61.9
Aqoxy7G03391 Aquilegia oxysepala HOM05D003524 ORTHO05D003988 2.0e-26 122.5 101 62.4
FAN27G2394 Fragaria x ananassa HOM05D003524 ORTHO05D003988 2.0e-26 122.5 104 62.5
MD15G1040800 Malus domestica HOM05D003524 ORTHO05D003988 2.0e-26 122.5 102 61.8
Ah.12g060790 Amaranthus hybridus HOM05D003524 ORTHO05D003988 2.6e-26 122.1 102 61.8
AUR62024806 Chenopodium quinoa HOM05D003524 ORTHO05D003988 5.7e-26 120.9 100 62.0
MD08G1056200 Malus domestica HOM05D003524 ORTHO05D003988 7.5e-26 120.6 102 59.8
BraA08t33803Z Brassica rapa HOM05D003524 ORTHO05D003988 9.7e-26 120.2 94 66.0
DCAR_022861 Daucus carota HOM05D003524 ORTHO05D003988 2.2e-25 119.0 93 66.7
Sopen08g002750 Solanum pennellii HOM05D003524 ORTHO05D003988 2.2e-25 119.0 95 65.3
Cc08_g07080 Coffea canephora HOM05D003524 ORTHO05D003988 2.8e-25 118.6 102 60.8
Cc08_g07090 Coffea canephora HOM05D003524 ORTHO05D003988 2.8e-25 118.6 102 60.8
BcaNung03115 Brassica carinata HOM05D003524 ORTHO05D003988 6.3e-25 117.5 102 60.8
FAN20G2483 Fragaria x ananassa HOM05D003524 ORTHO05D003988 1.1e-24 116.7 104 60.6
Cpa.g.sc127.42 Carica papaya HOM05D003524 ORTHO05D003988 9.1e-24 113.6 97 58.8
Glyma.17G223300 Glycine max HOM05D003524 ORTHO05D003988 3.5e-23 111.7 104 62.5
Glyma.14G101900 Glycine max HOM05D003524 ORTHO05D003988 1.0e-22 110.2 89 69.7
Phvul.001G041500 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 1.3e-22 109.8 90 66.7
unitig_748.g7378 Utricularia gibba HOM05D003524 ORTHO05D003988 1.3e-22 109.8 104 56.7
Manes.16G130000 Manihot esculenta HOM05D003524 ORTHO05D003988 1.1e-21 106.7 95 61.1
Duzib168G0976 Durio zibethinus HOM05D003524 ORTHO05D003988 5.5e-21 104.4 100 57.0
Potri.018G018300 Populus trichocarpa HOM05D003524 ORTHO05D003988 5.5e-21 104.4 94 60.6
Sed0019715 Sechium edule HOM05D003524 ORTHO05D003988 5.5e-21 104.4 105 57.1
Os09g0127700 Oryza sativa ssp. japonica HOM05D003524 ORTHO05D003988 4.7e-20 101.3 94 59.6
Zm00001eb095580 Zea mays HOM05D003524 ORTHO05D003988 1.3e-17 93.2 100 55.0
TAR625G1231 Trochodendron aralioides HOM05D003524 ORTHO05D003988 3.7e-17 91.7 101 54.5
BcaC01g01054 Brassica carinata HOM05D003524 ORTHO05D003988 6.3e-17 90.9 79 60.8
unitig_32.g11664 Utricularia gibba HOM05D006934 ORTHO05D008743 6.3e-17 90.9 89 53.9
FAN15G0945 Fragaria x ananassa HOM05D003524 ORTHO05D003988 3.1e-16 88.6 80 58.8
Sc08g0005190 Simmondsia chinensis HOM05D003524 ORTHO05D003988 9.1e-16 87.0 83 55.4
Sc08g0005200 Simmondsia chinensis HOM05D003524 ORTHO05D003988 9.1e-16 87.0 83 55.4
Cfa020822 Carpinus fangiana HOM05D003524 ORTHO05D003988 4.5e-15 84.7 86 58.1
SHI21076 Sapria himalayana HOM05D003524 ORTHO05D003988 5.9e-15 84.3 80 56.2
Haze_19201 Corylus avellana HOM05D003524 ORTHO05D003988 7.7e-15 84.0 86 58.1
AUR62029823 Chenopodium quinoa HOM05D003524 ORTHO05D003988 3.2e-13 78.6 81 50.6
CiPaw.03G202100 Carya illinoinensis HOM05D003524 ORTHO05D003988 4.2e-13 78.2 88 52.3
MBI15_g18244_MAGBIO Magnolia biondii HOM05D003524 ORTHO05D003988 5.5e-13 77.8 90 52.2
arahy.Tifrunner.gnm1.ann1.YXTM1W Arachis hypogaea HOM05D003524 ORTHO05D003988 2.7e-12 75.5 61 63.9
vmacro06076 Vaccinium macrocarpon HOM05D003524 ORTHO05D003988 2.7e-12 75.5 90 53.3
ClCG06G012430 Citrullus lanatus HOM05D003524 ORTHO05D003988 6.1e-12 74.3 70 57.1
arahy.Tifrunner.gnm1.ann1.36ASSY Arachis hypogaea HOM05D003524 ORTHO05D003988 1.0e-11 73.6 96 45.8
MELO3C010217.2 Cucumis melo HOM05D003524 ORTHO05D003988 2.3e-11 72.4 70 55.7
Lalb_Chr08g0234291 Lupinus albus HOM05D003524 ORTHO05D003988 3.0e-11 72.0 88 52.3
Prupe.7G263500 Prunus persica HOM05D003524 ORTHO05D003988 3.0e-11 72.0 91 50.5
Atru.chr7.178 Acer truncatum HOM05D003524 ORTHO05D003988 6.8e-11 70.9 67 58.2
AUR62032414 Chenopodium quinoa HOM05D003524 ORTHO05D003988 6.8e-11 70.9 101 43.6
Prupe.1G394100 Prunus persica HOM05D003524 ORTHO05D003988 6.8e-11 70.9 95 46.3
CSS0041430 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 8.8e-11 70.5 89 50.6
Ciclev10010389m.g Citrus clementina HOM05D003524 ORTHO05D003988 8.8e-11 70.5 61 62.3
Lalb_Chr11g0072661 Lupinus albus HOM05D003524 ORTHO05D003988 2.0e-10 69.3 83 48.2
Medtr4g130810 Medicago truncatula HOM05D003524 ORTHO05D003988 3.4e-10 68.6 61 57.4
Sed0002480 Sechium edule HOM05D003524 ORTHO05D003988 3.4e-10 68.6 94 43.6
EL10Ac4g10348 Beta vulgaris HOM05D003524 ORTHO05D003988 4.4e-10 68.2 80 55.0
Migut.K00320 Erythranthe guttata HOM05D003524 ORTHO05D003988 4.4e-10 68.2 100 40.0
Psat0s2403g0200 Pisum sativum HOM05D003524 ORTHO05D003988 4.4e-10 68.2 78 51.3
MSTRG.6141 Avicennia marina HOM05D003524 ORTHO05D003988 7.5e-10 67.4 61 54.1
QL02p093340 Quercus lobata HOM05D003524 ORTHO05D003988 7.5e-10 67.4 63 55.6
Rhsim03G0257300 Rhododendron simsii HOM05D000122 ORTHO05D000139 9.8e-10 67.0 79 49.4
Potri.006G183800 Populus trichocarpa HOM05D003524 ORTHO05D003988 1.3e-09 66.6 61 55.7
Ca_21130_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 1.7e-09 66.2 79 50.6
Ca_28168_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 1.7e-09 66.2 79 50.6
TPR.G24858 Trifolium pratense HOM05D003524 ORTHO05D003988 2.2e-09 65.9 61 55.7
MD15G1144300 Malus domestica HOM05D003524 ORTHO05D003988 2.8e-09 65.5 72 50.0
Sopen07g001680 Solanum pennellii HOM05D003524 ORTHO05D003988 3.7e-09 65.1 82 46.3
Cc06_g14890 Coffea canephora HOM05D003524 ORTHO05D003988 4.9e-09 64.7 76 46.1
Dinv42850 Davidia involucrata HOM05D003524 ORTHO05D003988 6.3e-09 64.3 80 46.2
Dinv43250 Davidia involucrata HOM05D003524 ORTHO05D003988 6.3e-09 64.3 80 46.2
PGSC0003DMG401011138 Solanum tuberosum HOM05D003524 ORTHO05D003988 8.3e-09 63.9 71 49.3
Thecc.09G029400 Theobroma cacao HOM05D003524 ORTHO05D003988 8.3e-09 63.9 59 55.9
COL.COLO4_18813 Corchorus olitorius HOM05D003524 ORTHO05D003988 1.1e-08 63.5 59 57.6
ECA240G1327 Erigeron canadensis HOM05D003524 ORTHO05D003988 1.1e-08 63.5 62 56.5
Glyma.02G204400 Glycine max HOM05D003524 ORTHO05D003988 1.8e-08 62.8 78 47.4
Nitab4.5_0002947g0020 Nicotiana tabacum HOM05D003524 ORTHO05D003988 1.8e-08 62.8 47 66.0
Oeu021302.1 Olea europaea HOM05D003524 ORTHO05D003988 1.8e-08 62.8 99 42.4
SalBow1G7165 Salvia bowleyana HOM05D003524 ORTHO05D003988 1.8e-08 62.8 91 45.1
Phvul.003G155700 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 4.1e-08 61.6 61 52.5
Sabra06G0139800 Salix brachista HOM05D003524 ORTHO05D003988 4.1e-08 61.6 46 63.0
Cpa.g.sc46.161 Carica papaya HOM05D000332 ORTHO05D000268 5.4e-08 61.2 61 50.8
Cpa.g.sc136.44 Carica papaya HOM05D003524 ORTHO05D003988 7.0e-08 60.8 61 50.8
AL6G44970 Arabidopsis lyrata HOM05D003524 ORTHO05D003988 9.2e-08 60.5 73 53.4
Eucgr.C00343 Eucalyptus grandis HOM05D003524 ORTHO05D003988 1.2e-07 60.1 73 50.7
Gohir.D05G054800 Gossypium hirsutum HOM05D003524 ORTHO05D003988 1.6e-07 59.7 59 57.6
Lsat_1_v5_gn_7_49941 Lactuca sativa HOM05D003524 ORTHO05D003988 2.0e-07 59.3 64 51.6
SGA_v2.0_scaffold12G06006 Striga asiatica HOM05D003524 ORTHO05D003988 2.7e-07 58.9 70 47.1
FAN23G1251 Fragaria x ananassa HOM05D003524 ORTHO05D003988 3.5e-07 58.5 87 42.5
FAN26G0389 Fragaria x ananassa HOM05D003524 ORTHO05D003988 3.5e-07 58.5 87 42.5
FAN28G2066 Fragaria x ananassa HOM05D003524 ORTHO05D003988 3.5e-07 58.5 87 42.5
Nitab4.5_0006523g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 3.5e-07 58.5 61 47.5
Carub.0006s2963 Capsella rubella HOM05D003524 ORTHO05D003988 5.9e-07 57.8 62 58.1
BcaB01g02731 Brassica carinata HOM05D003524 ORTHO05D003988 1.0e-06 57.0 73 50.7
Nitab4.5_0002011g0090 Nicotiana tabacum HOM05D003524 ORTHO05D003988 1.0e-06 57.0 61 41.0
A02p26460 Brassica napus HOM05D003524 ORTHO05D003988 1.3e-06 56.6 62 56.5
BraA02t07649Z Brassica rapa HOM05D003524 ORTHO05D003988 1.3e-06 56.6 62 56.5
Potri.018G106300 Populus trichocarpa HOM05D003524 ORTHO05D003988 1.3e-06 56.6 61 45.9
BcaB01g01557 Brassica carinata HOM05D003524 ORTHO05D003988 1.7e-06 56.2 62 54.8
BcaC01g04654 Brassica carinata HOM05D003524 ORTHO05D003988 1.7e-06 56.2 73 50.7
BcaC03g16382 Brassica carinata HOM05D003524 ORTHO05D003988 1.7e-06 56.2 62 54.8
BcaC04g21087 Brassica carinata HOM05D003524 ORTHO05D003988 1.7e-06 56.2 62 54.8
A03p29240 Brassica napus HOM05D003524 ORTHO05D003988 1.7e-06 56.2 73 50.7
C02p42080 Brassica napus HOM05D003524 ORTHO05D003988 1.7e-06 56.2 62 54.8
C03p35250 Brassica napus HOM05D003524 ORTHO05D003988 1.7e-06 56.2 73 50.7
C09p35850 Brassica napus HOM05D003524 ORTHO05D003988 1.7e-06 56.2 62 54.8
BolC2t10246H Brassica oleracea HOM05D003524 ORTHO05D003988 1.7e-06 56.2 62 54.8
BolC3t15837H Brassica oleracea HOM05D003524 ORTHO05D003988 1.7e-06 56.2 73 50.7
BolC9t56418H Brassica oleracea HOM05D003524 ORTHO05D003988 1.7e-06 56.2 62 54.8
BraA03t12119Z Brassica rapa HOM05D003524 ORTHO05D003988 1.7e-06 56.2 73 50.7
A09p28280 Brassica napus HOM05D003524 ORTHO05D003988 2.3e-06 55.8 62 54.8
BraA09t38397Z Brassica rapa HOM05D003524 ORTHO05D003988 2.3e-06 55.8 62 54.8
Thhalv10029345m.g Eutrema salsugineum HOM05D003524 ORTHO05D003988 2.9e-06 55.5 62 53.2
Hma1.2p1_0028F.1_g017600 Hydrangea macrophylla HOM05D003524 ORTHO05D003988 2.9e-06 55.5 77 41.6
Nn7g38002 Nelumbo nucifera HOM05D003524 ORTHO05D003988 2.9e-06 55.5 92 42.4
Nitab4.5_0003563g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 2.9e-06 55.5 63 39.7
BcaB05g23874 Brassica carinata HOM05D003524 ORTHO05D003988 3.8e-06 55.1 62 56.5
CARHR255710 Cardamine hirsuta HOM05D003524 ORTHO05D003988 3.8e-06 55.1 62 54.8
Sp6g06610 Schrenkiella parvula HOM05D003524 ORTHO05D003988 3.8e-06 55.1 62 54.8
Gohir.A05G053200 Gossypium hirsutum HOM05D003524 ORTHO05D003988 5.0e-06 54.7 46 58.7
Mapoly0006s0148 Marchantia polymorpha HOM05D003524 ORTHO05D003988 5.0e-06 54.7 80 42.5
AagrBONN_evm.TU.Sc2ySwM_368.420 Anthoceros agrestis HOM05D003524 ORTHO05D003988 6.6e-06 54.3 48 54.2
Gorai.009G056500 Gossypium raimondii HOM05D003524 ORTHO05D003988 6.6e-06 54.3 46 60.9


User provided reference genes

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