Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0009537 Lotus japonicus HOM05D002546 ORTHO05D002671 2.2e-94 349.0 177 100.0
Lj1g0024019 Lotus japonicus HOM05D002546 ORTHO05D002671 3.3e-58 228.8 177 71.8
Ca_16712_v3 Cicer arietinum L. HOM05D002546 ORTHO05D002671 1.8e-27 126.7 171 48.5
Medtr3g091610 Medicago truncatula HOM05D002546 ORTHO05D002671 5.1e-27 125.2 163 48.5
Glyma.04G235100 Glycine max HOM05D002546 ORTHO05D002671 8.7e-27 124.4 168 47.0
TPR.G19364 Trifolium pratense HOM05D002546 ORTHO05D002671 1.9e-26 123.2 167 50.3
Psat5g076720 Pisum sativum HOM05D002546 ORTHO05D002671 3.7e-25 119.0 169 45.0
Phvul.009G052000 Phaseolus vulgaris HOM05D002546 ORTHO05D002671 3.4e-23 112.5 156 43.6
Glyma.06G129500 Glycine max HOM05D002546 ORTHO05D002671 4.5e-23 112.1 101 56.4
Lalb_Chr08g0240191 Lupinus albus HOM05D002546 ORTHO05D002671 2.2e-22 109.8 114 50.9
Lalb_Chr11g0066921 Lupinus albus HOM05D002546 ORTHO05D002671 4.2e-21 105.5 130 46.2
Prupe.2G309300 Prunus persica HOM05D002546 ORTHO05D002671 3.3e-18 95.9 144 39.6
arahy.Tifrunner.gnm1.ann1.DAH91N Arachis hypogaea HOM05D002546 ORTHO05D002671 7.4e-18 94.7 147 38.1
arahy.Tifrunner.gnm1.ann1.D1PG31 Arachis hypogaea HOM05D002546 ORTHO05D002671 9.6e-18 94.4 116 44.0
MD01G1217900 Malus domestica HOM05D002546 ORTHO05D002671 4.8e-17 92.0 173 38.2
THA.LOC104825149 Tarenaya hassleriana HOM05D002546 ORTHO05D002671 6.2e-17 91.7 102 45.1
Atru.chr12.2223 Acer truncatum HOM05D002546 ORTHO05D002671 5.3e-16 88.6 90 50.0
MD07G1287600 Malus domestica HOM05D002546 ORTHO05D002671 5.3e-16 88.6 157 36.9
Sabra15G0009900 Salix brachista HOM05D002546 ORTHO05D002671 6.9e-16 88.2 102 43.1
THA.LOC104811915 Tarenaya hassleriana HOM05D002546 ORTHO05D002671 9.0e-16 87.8 105 43.8
Thecc.03G200000 Theobroma cacao HOM05D002546 ORTHO05D002671 9.0e-16 87.8 102 44.1
Potri.015G012300 Populus trichocarpa HOM05D002546 ORTHO05D002671 1.5e-15 87.0 102 42.2
Manes.01G184100 Manihot esculenta HOM05D002546 ORTHO05D002671 2.0e-15 86.7 102 43.1
QL09p008716 Quercus lobata HOM05D002546 ORTHO05D002671 2.0e-15 86.7 100 43.0
RcHm_v2.0_Chr1g0380501 Rosa chinensis HOM05D002546 ORTHO05D002671 3.4e-15 85.9 136 36.0
Potri.012G016400 Populus trichocarpa HOM05D002546 ORTHO05D002671 1.3e-14 84.0 100 43.0
Solyc03g083070.3 Solanum lycopersicum HOM05D002546 ORTHO05D002671 1.3e-14 84.0 115 40.9
Sopen03g022870 Solanum pennellii HOM05D002546 ORTHO05D002671 1.3e-14 84.0 115 40.9
Cfa016236 Carpinus fangiana HOM05D002546 ORTHO05D002671 1.7e-14 83.6 102 43.1
TWI39G0578 Tripterygium wilfordii HOM05D002546 ORTHO05D002671 2.2e-14 83.2 101 43.6
Haze_00205 Corylus avellana HOM05D002546 ORTHO05D002671 6.5e-14 81.6 108 41.7
Duzib205G0023 Durio zibethinus HOM05D002546 ORTHO05D002671 6.5e-14 81.6 102 44.1
Nitab4.5_0007005g0010 Nicotiana tabacum HOM05D002546 ORTHO05D002671 8.4e-14 81.3 72 48.6
FvH4_7g31440 Fragaria vesca HOM05D002546 ORTHO05D002671 1.1e-13 80.9 126 35.7
Sc13g0009890 Simmondsia chinensis HOM05D002546 ORTHO05D002671 1.1e-13 80.9 72 50.0
PGSC0003DMG400018551 Solanum tuberosum HOM05D002546 ORTHO05D002671 1.1e-13 80.9 115 40.9
A10p10470 Brassica napus HOM05D002546 ORTHO05D002671 1.4e-13 80.5 100 42.0
Cpa.g.sc3.94 Carica papaya HOM05D002546 ORTHO05D002671 1.4e-13 80.5 105 41.9
Thhalv10016082m.g Eutrema salsugineum HOM05D002546 ORTHO05D002671 1.4e-13 80.5 104 42.3
FAN01G0698 Fragaria x ananassa HOM05D002546 ORTHO05D002671 1.4e-13 80.5 129 35.7
FAN06G2719 Fragaria x ananassa HOM05D002546 ORTHO05D002671 1.4e-13 80.5 129 36.4
Gohir.D12G250300 Gossypium hirsutum HOM05D002546 ORTHO05D002671 1.4e-13 80.5 129 40.3
FAN06G0879 Fragaria x ananassa HOM05D002546 ORTHO05D002671 1.9e-13 80.1 129 36.4
FAN10G2266 Fragaria x ananassa HOM05D002546 ORTHO05D002671 1.9e-13 80.1 129 36.4
Manes.02G143800 Manihot esculenta HOM05D002546 ORTHO05D002671 2.5e-13 79.7 102 41.2
Sp6g15150 Schrenkiella parvula HOM05D002546 ORTHO05D002671 2.5e-13 79.7 104 43.3
CANSAT54G0351 Cannabis sativa HOM05D002546 ORTHO05D002671 3.2e-13 79.3 121 38.0
CiPaw.06G045700 Carya illinoinensis HOM05D002546 ORTHO05D002671 3.2e-13 79.3 129 37.2
THA.LOC104799973 Tarenaya hassleriana HOM05D002546 ORTHO05D002671 3.2e-13 79.3 102 41.2
Nitab4.5_0005393g0010 Nicotiana tabacum HOM05D002546 ORTHO05D002671 4.2e-13 79.0 72 47.2
BraA10t43130Z Brassica rapa HOM05D002546 ORTHO05D002671 5.5e-13 78.6 97 42.3
CAN.G481.18 Capsicum annuum HOM05D002546 ORTHO05D002671 7.2e-13 78.2 72 47.2
FAN03G1114 Fragaria x ananassa HOM05D002546 ORTHO05D002671 9.3e-13 77.8 129 35.7
Cc02_g01470 Coffea canephora HOM05D002546 ORTHO05D002671 1.2e-12 77.4 73 49.3
PGR142G3961 Punica granatum HOM05D002546 ORTHO05D002671 1.2e-12 77.4 99 39.4
Lsat_1_v5_gn_8_5280 Lactuca sativa HOM05D002546 ORTHO05D002671 1.6e-12 77.0 142 35.2
Gohir.A12G249500 Gossypium hirsutum HOM05D002546 ORTHO05D002671 2.1e-12 76.6 127 39.4
Hma1.2p1_1507F.1_g287620 Hydrangea macrophylla HOM05D002546 ORTHO05D002671 2.1e-12 76.6 76 44.7
Gorai.008G268400 Gossypium raimondii HOM05D002546 ORTHO05D002671 2.7e-12 76.3 96 43.8
BcaB05g21997 Brassica carinata HOM05D002546 ORTHO05D002671 3.5e-12 75.9 97 40.2
C09p42700 Brassica napus HOM05D002546 ORTHO05D002671 3.5e-12 75.9 96 40.6
BolC9t57146H Brassica oleracea HOM05D002546 ORTHO05D002671 3.5e-12 75.9 96 40.6
Peaxi162Scf00740g00014 Petunia axillaris HOM05D002546 ORTHO05D002671 3.5e-12 75.9 72 45.8
AL4G21080 Arabidopsis lyrata HOM05D002546 ORTHO05D002671 4.6e-12 75.5 104 42.3
CsaV3_5G037670 Cucumis sativus L. HOM05D002546 ORTHO05D002671 4.6e-12 75.5 130 34.6
Sed0021708 Sechium edule HOM05D002546 ORTHO05D002671 4.6e-12 75.5 129 34.1
Aa31LG3G9480 Aethionema arabicum HOM05D002546 ORTHO05D002671 7.9e-12 74.7 104 40.4
BcaC03g14467 Brassica carinata HOM05D002546 ORTHO05D002671 7.9e-12 74.7 100 41.0
C02p18890 Brassica napus HOM05D002546 ORTHO05D002671 7.9e-12 74.7 99 41.4
BolC2t08030H Brassica oleracea HOM05D002546 ORTHO05D002671 7.9e-12 74.7 99 41.4
Carub.0008s1319 Capsella rubella HOM05D002546 ORTHO05D002671 7.9e-12 74.7 104 41.3
CiPaw.05G197400 Carya illinoinensis HOM05D002546 ORTHO05D002671 7.9e-12 74.7 72 41.7
SalBow4G2158 Salvia bowleyana HOM05D002546 ORTHO05D002671 7.9e-12 74.7 111 36.9
CARHR265980 Cardamine hirsuta HOM05D002546 ORTHO05D002671 1.0e-11 74.3 99 42.4
TWI23G0928 Tripterygium wilfordii HOM05D002546 ORTHO05D002671 1.0e-11 74.3 103 39.8
COL.COLO4_16770 Corchorus olitorius HOM05D000513 ORTHO05D007779 1.3e-11 73.9 102 38.2
MELO3C021488.2 Cucumis melo HOM05D002546 ORTHO05D002671 1.3e-11 73.9 116 34.5
Dinv29272 Davidia involucrata HOM05D002546 ORTHO05D002671 1.3e-11 73.9 73 43.8
Duzib084G1168 Durio zibethinus HOM05D002546 ORTHO05D002671 1.3e-11 73.9 173 33.5
BcaC06g32660 Brassica carinata HOM05D002546 ORTHO05D002671 1.8e-11 73.6 95 38.9
ClCG09G018560 Citrullus lanatus HOM05D002546 ORTHO05D002671 1.8e-11 73.6 73 45.2
AT5G52990 Arabidopsis thaliana HOM05D002546 ORTHO05D002671 2.3e-11 73.2 104 41.3
AL8G27590 Arabidopsis lyrata HOM05D002546 ORTHO05D002671 3.0e-11 72.8 104 42.3
A02p11380 Brassica napus HOM05D002546 ORTHO05D002671 3.0e-11 72.8 97 43.3
BraA02t06202Z Brassica rapa HOM05D002546 ORTHO05D002671 3.0e-11 72.8 97 43.3
Migut.F01026 Erythranthe guttata HOM05D002546 ORTHO05D002671 3.0e-11 72.8 66 50.0
Hma1.2p1_1587F.1_g292300 Hydrangea macrophylla HOM05D002546 ORTHO05D002671 3.9e-11 72.4 73 46.6
Ah.07g205550 Amaranthus hybridus HOM05D002546 ORTHO05D002671 5.1e-11 72.0 146 34.2
Hma1.2p1_0404F.1_g145300 Hydrangea macrophylla HOM05D002546 ORTHO05D002671 5.1e-11 72.0 73 45.2
unitig_90.g27524 Utricularia gibba HOM05D002546 ORTHO05D002671 5.1e-11 72.0 69 43.5
Ciclev10021823m.g Citrus clementina HOM05D002546 ORTHO05D002671 8.7e-11 71.2 105 40.0
Migut.F00205 Erythranthe guttata HOM05D002546 ORTHO05D002671 8.7e-11 71.2 71 45.1
Oeu037180.2 Olea europaea HOM05D002546 ORTHO05D002671 8.7e-11 71.2 72 50.0
HanXRQChr08g0225361 Helianthus annuus HOM05D002546 ORTHO05D002671 1.1e-10 70.9 83 42.2
Sed0003835 Sechium edule HOM05D002546 ORTHO05D002671 1.1e-10 70.9 104 35.6
Dinv35341 Davidia involucrata HOM05D000736 ORTHO05D002671 1.5e-10 70.5 72 44.4
vmacro10125 Vaccinium macrocarpon HOM05D002546 ORTHO05D002671 1.5e-10 70.5 76 39.5
CSS0038427 Camellia sinensis var. sinensis HOM05D002546 ORTHO05D002671 1.9e-10 70.1 75 42.7
Oeu060990.1 Olea europaea HOM05D002546 ORTHO05D002671 2.5e-10 69.7 66 47.0
Rhsim09G0206000 Rhododendron simsii HOM05D002546 ORTHO05D002671 2.5e-10 69.7 100 36.0
Actinidia06145 Actinidia chinensis HOM05D002546 ORTHO05D002671 3.3e-10 69.3 66 48.5
EL10Ac3g05273 Beta vulgaris HOM05D002546 ORTHO05D002671 3.3e-10 69.3 162 29.0
Eucgr.K00388 Eucalyptus grandis HOM05D002546 ORTHO05D002671 3.3e-10 69.3 103 34.0
SEGI_19070 Sequoiadendron giganteum HOM05D002546 ORTHO05D002671 3.3e-10 69.3 78 39.7
Oeu010693.1 Olea europaea HOM05D002546 ORTHO05D002671 4.3e-10 68.9 66 48.5
SGA_v2.0_scaffold192G40535 Striga asiatica HOM05D002546 ORTHO05D002671 4.3e-10 68.9 68 48.5
AT4G27840 Arabidopsis thaliana HOM05D002546 ORTHO05D002671 5.7e-10 68.6 120 35.0
Thhalv10025998m.g Eutrema salsugineum HOM05D002546 ORTHO05D002671 5.7e-10 68.6 100 41.0
RcHm_v2.0_Chr1g0359031 Rosa chinensis HOM05D002546 ORTHO05D002671 5.7e-10 68.6 70 44.3
TAR374G0327 Trochodendron aralioides HOM05D002546 ORTHO05D002671 5.7e-10 68.6 71 45.1
SGA_v2.0_scaffold13G06539 Striga asiatica HOM05D002546 ORTHO05D002671 7.4e-10 68.2 64 50.0
TAR375G0270 Trochodendron aralioides HOM05D002546 ORTHO05D002671 7.4e-10 68.2 70 45.7
AL7G24810 Arabidopsis lyrata HOM05D002546 ORTHO05D002671 9.7e-10 67.8 97 40.2
MBI07_g37203_MAGBIO Magnolia biondii HOM05D002546 ORTHO05D002671 1.6e-09 67.0 66 45.5
C07p55760 Brassica napus HOM05D002546 ORTHO05D002671 2.2e-09 66.6 103 34.0
SGA_v2.0_scaffold55G19774 Striga asiatica HOM05D002546 ORTHO05D002671 2.8e-09 66.2 76 46.1
BolC7t46054H Brassica oleracea HOM05D002546 ORTHO05D002671 4.8e-09 65.5 95 35.8
AUR62006084 Chenopodium quinoa HOM05D002546 ORTHO05D002671 4.8e-09 65.5 76 38.2
AUR62019410 Chenopodium quinoa HOM05D002546 ORTHO05D002671 4.8e-09 65.5 76 38.2
RcHm_v2.0_Chr2g0122261 Rosa chinensis HOM05D002546 ORTHO05D002671 4.8e-09 65.5 69 43.5
Carub.0007s1300 Capsella rubella HOM05D000073 ORTHO05D000033 8.2e-09 64.7 97 39.2
A03p57540 Brassica napus HOM05D002546 ORTHO05D002671 1.1e-08 64.3 95 35.8
BraA03t14822Z Brassica rapa HOM05D002546 ORTHO05D002671 1.1e-08 64.3 95 35.8
MSTRG.8649 Avicennia marina HOM05D002546 ORTHO05D002671 1.8e-08 63.5 69 42.0
Aqoxy5G04280 Aquilegia oxysepala HOM05D002546 ORTHO05D002671 2.4e-08 63.2 64 42.2
DCAR_010596 Daucus carota HOM05D002546 ORTHO05D002671 3.1e-08 62.8 121 33.1
MBI06_g10865_MAGBIO Magnolia biondii HOM05D000078 ORTHO05D002671 3.1e-08 62.8 66 39.4
Thhalv10008489m.g Eutrema salsugineum HOM05D002546 ORTHO05D002671 9.0e-08 61.2 75 42.7
FAN10G2463 Fragaria x ananassa HOM05D000630 ORTHO05D002671 9.0e-08 61.2 129 33.3
CARHR032910 Cardamine hirsuta HOM05D002546 ORTHO05D002671 1.2e-07 60.8 70 42.9
MBI06_g32150_MAGBIO Magnolia biondii HOM05D002546 ORTHO05D002671 2.0e-07 60.1 109 33.0
AT1G33475 Arabidopsis thaliana HOM05D002546 ORTHO05D002671 3.4e-07 59.3 103 34.0
Carub.0001s3166 Capsella rubella HOM05D002546 ORTHO05D002671 3.4e-07 59.3 103 32.0
DCAR_020324 Daucus carota HOM05D000156 ORTHO05D005692 7.7e-07 58.2 48 52.1
Pp3c24_6430 Physcomitrium patens HOM05D002546 ORTHO05D002671 7.7e-07 58.2 57 49.1
Pp3c8_14310 Physcomitrium patens HOM05D002546 ORTHO05D002671 1.3e-06 57.4 64 39.1
Sp1g28920 Schrenkiella parvula HOM05D002546 ORTHO05D002671 1.3e-06 57.4 102 30.4
BcaB07g32991 Brassica carinata HOM05D002546 ORTHO05D002671 1.7e-06 57.0 70 40.0
AL8G27530 Arabidopsis lyrata HOM05D002546 ORTHO05D002671 2.2e-06 56.6 55 49.1
CSS0004784 Camellia sinensis var. sinensis HOM05D002546 ORTHO05D002671 2.2e-06 56.6 71 40.8
MD05G1005900 Malus domestica HOM05D002546 ORTHO05D002671 5.0e-06 55.5 69 40.6
ATR1089G142 Amborella trichopoda HOM05D002546 ORTHO05D002671 8.5e-06 54.7 69 39.1
CDE04G3511 Ceratophyllum demersum HOM05D002546 ORTHO05D002671 8.5e-06 54.7 68 41.2
PSO832G4337 Papaver somniferum HOM05D002546 ORTHO05D002671 8.5e-06 54.7 72 33.3


User provided reference genes

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