Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0009364 Lotus japonicus HOM05D006901 ORTHO05D008582 4.2e-69 264.6 139 100.0
Lj5g0019877 Lotus japonicus HOM05D006901 ORTHO05D008582 2.6e-66 255.4 152 91.4
TPR.G792 Trifolium pratense HOM05D006901 ORTHO05D008582 8.6e-46 187.2 157 68.2
Psat6g189960 Pisum sativum HOM05D006901 ORTHO05D008582 3.3e-45 185.3 156 67.9
Ca_10653_v3 Cicer arietinum L. HOM05D006901 ORTHO05D008582 1.7e-41 172.9 157 66.2
Medtr1g097570 Medicago truncatula HOM05D006901 ORTHO05D008582 1.1e-40 170.2 157 64.3
Phvul.007G084500 Phaseolus vulgaris HOM05D006901 ORTHO05D008582 1.6e-39 166.4 157 63.1
Glyma.20G171000 Glycine max HOM05D006901 ORTHO05D008582 3.9e-38 161.8 156 61.5
VMungo0720G0575 Vigna mungo HOM05D006901 ORTHO05D008582 1.1e-37 160.2 157 63.1
Lalb_Chr21g0305611 Lupinus albus HOM05D006901 ORTHO05D008582 1.9e-37 159.5 157 63.1
Glyma.10G220600 Glycine max HOM05D006901 ORTHO05D008582 3.6e-36 155.2 157 59.9
arahy.Tifrunner.gnm1.ann1.96Y3Q8 Arachis hypogaea HOM05D006901 ORTHO05D008582 3.0e-30 135.6 152 56.6
arahy.Tifrunner.gnm1.ann1.YZ7MCJ Arachis hypogaea HOM05D006901 ORTHO05D008582 1.5e-29 133.3 152 55.9
QL02p036605 Quercus lobata HOM05D006901 ORTHO05D008582 1.9e-29 132.9 159 54.7
QL02p037117 Quercus lobata HOM05D006901 ORTHO05D008582 2.1e-28 129.4 159 54.7
Prupe.8G043100 Prunus persica HOM05D006901 ORTHO05D008582 2.8e-28 129.0 122 62.3
MD05G1035400 Malus domestica HOM05D006901 ORTHO05D008582 6.8e-27 124.4 122 60.7
MD10G1037700 Malus domestica HOM05D006901 ORTHO05D008582 1.5e-26 123.2 130 56.9
Duzib116G0108 Durio zibethinus HOM05D006901 ORTHO05D008582 7.6e-26 120.9 177 48.6
CANSAT25G0969 Cannabis sativa HOM05D006901 ORTHO05D008582 1.7e-25 119.8 134 59.7
TAR376G0851 Trochodendron aralioides HOM05D006901 ORTHO05D008582 3.7e-25 118.6 180 48.3
Ah.16g108540 Amaranthus hybridus HOM05D006901 ORTHO05D008582 4.9e-25 118.2 164 53.0
Atru.chr13.1989 Acer truncatum HOM05D006901 ORTHO05D008582 8.4e-25 117.5 161 51.6
CiPaw.16G007900 Carya illinoinensis HOM05D006901 ORTHO05D008582 1.4e-24 116.7 152 52.6
Gohir.D06G116100 Gossypium hirsutum HOM05D006901 ORTHO05D008582 1.4e-24 116.7 171 50.9
Gorai.010G133900 Gossypium raimondii HOM05D006901 ORTHO05D008582 1.4e-24 116.7 171 50.9
Thecc.08G162300 Theobroma cacao HOM05D006901 ORTHO05D008582 1.4e-24 116.7 142 54.2
Nitab4.5_0003178g0070 Nicotiana tabacum HOM05D006901 ORTHO05D008582 1.9e-24 116.3 165 46.7
Nitab4.5_0003443g0040 Nicotiana tabacum HOM05D006901 ORTHO05D008582 1.9e-24 116.3 166 48.2
Haze_17820 Corylus avellana HOM05D006901 ORTHO05D008582 2.4e-24 115.9 177 48.0
Duzib041G0277 Durio zibethinus HOM05D006901 ORTHO05D008582 2.4e-24 115.9 177 48.0
Duzib093G0981 Durio zibethinus HOM05D006901 ORTHO05D008582 3.2e-24 115.5 141 54.6
Gohir.A06G111900 Gossypium hirsutum HOM05D006901 ORTHO05D008582 4.1e-24 115.2 103 67.0
Cpa.g.sc26.114 Carica papaya HOM05D006901 ORTHO05D008582 9.2e-24 114.0 94 70.2
Actinidia15615 Actinidia chinensis HOM05D006901 ORTHO05D008582 1.2e-23 113.6 143 49.7
Aa31LG4G8920 Aethionema arabicum HOM05D006901 ORTHO05D008582 1.6e-23 113.2 147 55.1
FAN15G3138 Fragaria x ananassa HOM05D006901 ORTHO05D008582 1.6e-23 113.2 136 54.4
FAN20G0005 Fragaria x ananassa HOM05D006901 ORTHO05D008582 1.6e-23 113.2 136 54.4
Dinv02470 Davidia involucrata HOM05D006901 ORTHO05D008582 2.1e-23 112.8 172 45.3
Actinidia17766 Actinidia chinensis HOM05D006901 ORTHO05D008582 3.5e-23 112.1 144 48.6
RcHm_v2.0_Chr6g0273991 Rosa chinensis HOM05D006901 ORTHO05D008582 3.5e-23 112.1 91 70.3
TWI34G1320 Tripterygium wilfordii HOM05D006901 ORTHO05D008582 4.6e-23 111.7 143 52.4
FvH4_2g12890 Fragaria vesca HOM05D006901 ORTHO05D008582 7.8e-23 110.9 135 54.8
FAN24G1802 Fragaria x ananassa HOM05D006901 ORTHO05D008582 7.8e-23 110.9 135 54.8
AL2G31300 Arabidopsis lyrata HOM05D006901 ORTHO05D008582 1.0e-22 110.5 147 53.1
Potri.005G198100 Populus trichocarpa HOM05D006901 ORTHO05D008582 1.0e-22 110.5 184 44.0
Solyc04g072038.1 Solanum lycopersicum HOM05D006901 ORTHO05D008582 1.3e-22 110.2 165 45.5
PGSC0003DMG400025056 Solanum tuberosum HOM05D006901 ORTHO05D008582 1.3e-22 110.2 165 45.5
Thhalv10019220m.g Eutrema salsugineum HOM05D006901 ORTHO05D008582 1.7e-22 109.8 140 54.3
Sabra02G0050800 Salix brachista HOM05D006901 ORTHO05D008582 1.7e-22 109.8 184 45.7
CAN.G1183.19 Capsicum annuum HOM05D006901 ORTHO05D008582 2.3e-22 109.4 165 47.3
CARHR291060 Cardamine hirsuta HOM05D006901 ORTHO05D008582 2.3e-22 109.4 126 55.6
CsaV3_6G004930 Cucumis sativus L. HOM05D006901 ORTHO05D008582 2.3e-22 109.4 109 63.3
Potri.002G063100 Populus trichocarpa HOM05D006901 ORTHO05D008582 2.3e-22 109.4 184 46.2
Sabra05G0150900 Salix brachista HOM05D006901 ORTHO05D008582 2.3e-22 109.4 181 44.2
SalBow7G3034 Salvia bowleyana HOM05D006901 ORTHO05D008582 2.3e-22 109.4 161 48.4
Sc02g0003760 Simmondsia chinensis HOM05D006901 ORTHO05D008582 2.3e-22 109.4 175 45.7
EL10Ac1g01617 Beta vulgaris HOM05D006901 ORTHO05D008582 3.0e-22 109.0 137 54.7
Ciclev10002626m.g Citrus clementina HOM05D006901 ORTHO05D008582 3.0e-22 109.0 185 44.3
PSO675G2506 Papaver somniferum HOM05D006901 ORTHO05D008582 3.0e-22 109.0 160 48.1
Sp5g26760 Schrenkiella parvula HOM05D006901 ORTHO05D008582 3.0e-22 109.0 125 58.4
EL10Ac1g01620 Beta vulgaris HOM05D006901 ORTHO05D008582 3.9e-22 108.6 173 49.7
FAN27G3188 Fragaria x ananassa HOM05D006901 ORTHO05D008582 3.9e-22 108.6 131 55.0
Manes.18G095700 Manihot esculenta HOM05D006901 ORTHO05D008582 3.9e-22 108.6 87 72.4
TWI60G0595 Tripterygium wilfordii HOM05D006901 ORTHO05D008582 3.9e-22 108.6 99 63.6
HPP92_002808 Vanilla planifolia HOM05D006901 ORTHO05D008582 3.9e-22 108.6 126 54.8
HPP92_002865 Vanilla planifolia HOM05D006901 ORTHO05D008582 3.9e-22 108.6 126 54.8
Sopen04g028100 Solanum pennellii HOM05D006901 ORTHO05D008582 5.1e-22 108.2 165 44.8
EL10Ac4g07716 Beta vulgaris HOM05D006901 ORTHO05D008582 6.6e-22 107.8 137 53.3
PGR042G3646 Punica granatum HOM05D006901 ORTHO05D008582 6.6e-22 107.8 90 68.9
PGR102G0180 Punica granatum HOM05D006901 ORTHO05D008582 6.6e-22 107.8 90 68.9
A07p37880 Brassica napus HOM05D006901 ORTHO05D008582 1.1e-21 107.1 158 47.5
BraA07t31353Z Brassica rapa HOM05D006901 ORTHO05D008582 1.1e-21 107.1 158 47.5
ClCG08G007260 Citrullus lanatus HOM05D006901 ORTHO05D008582 1.5e-21 106.7 105 62.9
MELO3C019969.2 Cucumis melo HOM05D006901 ORTHO05D008582 1.9e-21 106.3 111 62.2
PSO541G2877 Papaver somniferum HOM05D006901 ORTHO05D008582 1.9e-21 106.3 160 48.1
THA.LOC104810483 Tarenaya hassleriana HOM05D006901 ORTHO05D008582 2.5e-21 105.9 92 67.4
Carub.0002s1849 Capsella rubella HOM05D006901 ORTHO05D008582 3.3e-21 105.5 125 56.8
Sed0007149 Sechium edule HOM05D006901 ORTHO05D008582 3.3e-21 105.5 158 48.1
BcaC08g46599 Brassica carinata HOM05D006901 ORTHO05D008582 5.6e-21 104.8 158 46.8
C06p45780 Brassica napus HOM05D006901 ORTHO05D008582 5.6e-21 104.8 158 46.8
Cc10_g06470 Coffea canephora HOM05D006901 ORTHO05D008582 5.6e-21 104.8 167 45.5
MSTRG.22112 Avicennia marina HOM05D006901 ORTHO05D008582 7.3e-21 104.4 138 50.0
Lsat_1_v5_gn_1_5120 Lactuca sativa HOM05D006901 ORTHO05D008582 7.3e-21 104.4 158 50.0
Rhsim06G0092600 Rhododendron simsii HOM05D006901 ORTHO05D008582 7.3e-21 104.4 112 58.9
AT1G71730 Arabidopsis thaliana HOM05D006901 ORTHO05D008582 1.6e-20 103.2 103 61.2
BolC6t39630H Brassica oleracea HOM05D006901 ORTHO05D008582 1.6e-20 103.2 158 46.2
Nn5g28858 Nelumbo nucifera HOM05D006901 ORTHO05D008582 1.6e-20 103.2 139 53.2
SGA_v2.0_scaffold82G26198 Striga asiatica HOM05D006901 ORTHO05D008582 2.8e-20 102.4 159 45.9
unitig_32.g11111 Utricularia gibba HOM05D006901 ORTHO05D008582 3.6e-20 102.1 90 66.7
HanXRQChr02g0041271 Helianthus annuus HOM05D006901 ORTHO05D008582 4.7e-20 101.7 162 48.1
Oeu017620.1 Olea europaea HOM05D006901 ORTHO05D008582 4.7e-20 101.7 115 53.0
Hma1.2p1_0678F.1_g202120 Hydrangea macrophylla HOM05D006901 ORTHO05D008582 6.2e-20 101.3 136 48.5
GSVIVG01013704001 Vitis vinifera HOM05D006901 ORTHO05D008582 6.2e-20 101.3 125 55.2
CSS0011226 Camellia sinensis var. sinensis HOM05D006901 ORTHO05D008582 1.4e-19 100.1 171 42.7
CSS0025966 Camellia sinensis var. sinensis HOM05D006901 ORTHO05D008582 1.4e-19 100.1 171 42.7
Eucgr.F02679 Eucalyptus grandis HOM05D006901 ORTHO05D008582 1.4e-19 100.1 86 67.4
Peaxi162Scf00360g00917 Petunia axillaris HOM05D006901 ORTHO05D008582 2.4e-19 99.4 162 43.8
ECA247G1717 Erigeron canadensis HOM05D006901 ORTHO05D008582 8.9e-19 97.4 86 64.0
Nn6g32189 Nelumbo nucifera HOM05D006901 ORTHO05D008582 1.5e-18 96.7 180 42.2
SalBow8G2041 Salvia bowleyana HOM05D006901 ORTHO05D008582 1.5e-18 96.7 135 46.7
Lj7E386T0 Lonicera japonica HOM05D006901 ORTHO05D008582 3.4e-18 95.5 96 62.5
SEGI_14424 Sequoiadendron giganteum HOM05D006901 ORTHO05D008582 4.4e-18 95.1 96 59.4
ATR1120G022 Amborella trichopoda HOM05D006901 ORTHO05D008582 7.6e-18 94.4 81 69.1
AagrBONN_evm.TU.Sc2ySwM_228.5132 Anthoceros agrestis HOM05D006901 ORTHO05D008582 3.2e-16 89.0 95 54.7
Pp3c17_20520 Physcomitrium patens HOM05D006901 ORTHO05D008582 4.2e-16 88.6 103 54.4
Zm00001eb346910 Zea mays HOM05D006901 ORTHO05D008582 3.5e-15 85.5 90 56.7
SMO351G0406 Selaginella moellendorffii HOM05D006901 ORTHO05D008582 1.7e-14 83.2 83 59.0
Os05g0182000 Oryza sativa ssp. japonica HOM05D006901 ORTHO05D008582 3.9e-14 82.0 83 57.8
CSS0012150 Camellia sinensis var. sinensis HOM05D006901 ORTHO05D008582 2.5e-13 79.3 155 40.0
CSS0007119 Camellia sinensis var. sinensis HOM05D006901 ORTHO05D008582 2.4e-11 72.8 103 43.7
MCO05G280 Micromonas commoda HOM05D006901 ORTHO05D008582 1.2e-10 70.5 89 47.2
CBR_g54341 Chara braunii HOM05D006901 ORTHO05D008582 1.5e-10 70.1 82 52.4
DCAR_001194 Daucus carota HOM05D006901 ORTHO05D008582 2.0e-10 69.7 65 64.6
CSS0023453 Camellia sinensis var. sinensis HOM05D006901 ORTHO05D008582 5.8e-10 68.2 84 50.0
Ah.08g214420 Amaranthus hybridus HOM05D006901 ORTHO05D008582 6.4e-09 64.7 67 53.7
Cre03.g176500 Chlamydomonas reinhardtii HOM05D006901 ORTHO05D008582 3.0e-06 55.8 87 41.4


User provided reference genes

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