Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0009107 Lotus japonicus HOM05D007252 ORTHO05D009074 5.3e-27 123.6 63 100.0
Glyma.02G200400 Glycine max HOM05D007252 ORTHO05D009074 8.2e-20 99.8 62 74.2
Medtr1g058260 Medicago truncatula HOM05D007252 ORTHO05D009074 1.3e-17 92.4 61 70.5
Phvul.007G231000 Phaseolus vulgaris HOM05D007252 ORTHO05D009074 2.5e-16 88.2 62 62.9
Lalb_Chr21g0315921 Lupinus albus HOM05D007252 ORTHO05D009074 9.3e-16 86.3 63 66.7
Glyma.10G076300 Glycine max HOM05D007252 ORTHO05D009074 1.6e-15 85.5 60 68.3
Thecc.05G097600 Theobroma cacao HOM05D007252 ORTHO05D009074 1.3e-12 75.9 63 60.3
Actinidia07909 Actinidia chinensis HOM05D007252 ORTHO05D009074 2.8e-12 74.7 58 58.6
Duzib093G1663 Durio zibethinus HOM05D007252 ORTHO05D009074 2.8e-12 74.7 63 60.3
TWI74G0966 Tripterygium wilfordii HOM05D007252 ORTHO05D009074 2.8e-12 74.7 63 55.6
Manes.09G050900 Manihot esculenta HOM05D007252 ORTHO05D009074 8.2e-12 73.2 63 57.1
Cfa016655 Carpinus fangiana HOM05D007252 ORTHO05D009074 1.1e-11 72.8 58 60.3
COL.COLO4_29654 Corchorus olitorius HOM05D007252 ORTHO05D009074 1.4e-11 72.4 63 55.6
Gohir.A11G318300 Gossypium hirsutum HOM05D007252 ORTHO05D009074 1.8e-11 72.0 63 55.6
Gohir.D11G337600 Gossypium hirsutum HOM05D007252 ORTHO05D009074 3.1e-11 71.2 63 54.0
Gorai.007G367600 Gossypium raimondii HOM05D007252 ORTHO05D009074 3.1e-11 71.2 63 54.0
MD14G1032500 Malus domestica HOM05D007252 ORTHO05D009074 6.9e-11 70.1 62 54.8
Potri.006G207600 Populus trichocarpa HOM05D007252 ORTHO05D009074 2.0e-10 68.6 62 51.6
CiPaw.10G013800 Carya illinoinensis HOM05D007252 ORTHO05D009074 2.6e-10 68.2 62 53.2
PGR142G0020 Punica granatum HOM05D007252 ORTHO05D009074 4.5e-10 67.4 63 54.0
RcHm_v2.0_Chr3g0474991 Rosa chinensis HOM05D007252 ORTHO05D009074 4.5e-10 67.4 62 54.8
Sabra06G0159800 Salix brachista HOM05D002789 ORTHO05D009074 4.5e-10 67.4 51 62.7
Gohir.A04G010100 Gossypium hirsutum HOM05D007252 ORTHO05D009074 5.9e-10 67.0 60 53.3
Gohir.D05G377900 Gossypium hirsutum HOM05D007252 ORTHO05D009074 7.7e-10 66.6 60 53.3
Gorai.009G445700 Gossypium raimondii HOM05D007252 ORTHO05D009074 1.0e-09 66.2 60 51.7
DCAR_020730 Daucus carota HOM05D006095 ORTHO05D001225 1.7e-09 65.5 48 62.5
Nn7g36100 Nelumbo nucifera HOM05D002789 ORTHO05D003185 2.9e-09 64.7 61 49.2
Ciclev10010136m.g Citrus clementina HOM05D007252 ORTHO05D009074 3.8e-09 64.3 61 54.1
Cfa020240 Carpinus fangiana HOM05D007252 ORTHO05D009074 6.5e-09 63.5 60 50.0
COL.COLO4_09763 Corchorus olitorius HOM05D007252 ORTHO05D009074 8.5e-09 63.2 60 51.7
Prupe.7G100100 Prunus persica HOM05D007252 ORTHO05D009074 8.5e-09 63.2 63 52.4
BcaB04g21127 Brassica carinata HOM05D007252 ORTHO05D009074 1.1e-08 62.8 59 52.5
Thecc.07G024200 Theobroma cacao HOM05D007252 ORTHO05D009074 1.1e-08 62.8 56 51.8
AT3G11591 Arabidopsis thaliana HOM05D007252 ORTHO05D009074 1.4e-08 62.4 59 54.2
Migut.L01811 Erythranthe guttata HOM05D007252 ORTHO05D009074 1.9e-08 62.0 63 49.2
Aa31LG3G4990 Aethionema arabicum HOM05D007252 ORTHO05D009074 2.5e-08 61.6 63 52.4
Cpa.g.sc104.83 Carica papaya HOM05D007252 ORTHO05D009074 2.5e-08 61.6 58 53.4
MD03G1190100 Malus domestica HOM05D007252 ORTHO05D009074 2.5e-08 61.6 60 51.7
MD11G1206600 Malus domestica HOM05D007252 ORTHO05D009074 2.5e-08 61.6 60 51.7
BcaC09g48182 Brassica carinata HOM05D007252 ORTHO05D009074 3.2e-08 61.2 59 52.5
BolC1t05305H Brassica oleracea HOM05D007252 ORTHO05D009074 3.2e-08 61.2 59 52.5
FAN09G1620 Fragaria x ananassa HOM05D007252 ORTHO05D009074 3.2e-08 61.2 62 53.2
TAR633G2179 Trochodendron aralioides HOM05D002789 ORTHO05D003185 3.2e-08 61.2 55 47.3
EL10Ac4g07630 Beta vulgaris HOM05D007252 ORTHO05D009074 4.2e-08 60.8 56 57.1
CSS0032760 Camellia sinensis var. sinensis HOM05D007252 ORTHO05D009074 4.2e-08 60.8 61 47.5
CANSAT80G1100 Cannabis sativa HOM05D007252 ORTHO05D009074 4.2e-08 60.8 57 49.1
CiPaw.10G013500 Carya illinoinensis HOM05D007252 ORTHO05D009074 4.2e-08 60.8 62 46.8
HanXRQChr03g0076961 Helianthus annuus HOM05D007252 ORTHO05D009074 4.2e-08 60.8 56 51.8
Sc20g0006500 Simmondsia chinensis HOM05D007252 ORTHO05D009074 4.2e-08 60.8 57 52.6
Prupe.4G229900 Prunus persica HOM05D007252 ORTHO05D009074 5.5e-08 60.5 60 48.3
BNapus_Darmor_BZH_scaffold_145p00090 Brassica napus HOM05D007252 ORTHO05D009074 9.4e-08 59.7 59 50.8
BraA01t04175Z Brassica rapa HOM05D007252 ORTHO05D009074 9.4e-08 59.7 59 50.8
CSS0018987 Camellia sinensis var. sinensis HOM05D007252 ORTHO05D009074 9.4e-08 59.7 61 47.5
CARHR086150 Cardamine hirsuta HOM05D007252 ORTHO05D009074 9.4e-08 59.7 59 55.9
Ciclev10003084m.g Citrus clementina HOM05D007252 ORTHO05D009074 9.4e-08 59.7 60 48.3
Lsat_1_v5_gn_0_15441 Lactuca sativa HOM05D007252 ORTHO05D009074 9.4e-08 59.7 60 48.3
VMungo0540G2390 Vigna mungo HOM05D007252 ORTHO05D009074 9.4e-08 59.7 60 48.3
AUR62015933 Chenopodium quinoa HOM05D007252 ORTHO05D009074 1.2e-07 59.3 60 53.3
QL08p064685 Quercus lobata HOM05D007252 ORTHO05D009074 1.2e-07 59.3 60 46.7
HPP92_005058 Vanilla planifolia HOM05D007563 ORTHO05D009546 1.2e-07 59.3 61 49.2
Phvul.006G051100 Phaseolus vulgaris HOM05D007252 ORTHO05D009074 1.6e-07 58.9 60 46.7
AUR62040676 Chenopodium quinoa HOM05D007252 ORTHO05D009074 2.7e-07 58.2 60 53.3
Manes.03G134300 Manihot esculenta HOM05D007252 ORTHO05D009074 2.7e-07 58.2 58 48.3
Eucgr.F03517 Eucalyptus grandis HOM05D007252 ORTHO05D009074 3.6e-07 57.8 56 48.2
Sc07g0002910 Simmondsia chinensis HOM05D007252 ORTHO05D009074 3.6e-07 57.8 60 46.7
FvH4_3g23810 Fragaria vesca HOM05D007252 ORTHO05D009074 4.6e-07 57.4 60 46.7
FAN11G0552 Fragaria x ananassa HOM05D007252 ORTHO05D009074 4.6e-07 57.4 60 46.7
FAN21G1608 Fragaria x ananassa HOM05D007252 ORTHO05D009074 4.6e-07 57.4 60 46.7
Potri.008G011620 Populus trichocarpa HOM05D007252 ORTHO05D009074 4.6e-07 57.4 56 46.4
RcHm_v2.0_Chr5g0041991 Rosa chinensis HOM05D007252 ORTHO05D009074 4.6e-07 57.4 60 46.7
Sabra08G0007100 Salix brachista HOM05D000045 ORTHO05D000067 4.6e-07 57.4 56 48.2
HPP92_012649 Vanilla planifolia HOM05D007252 ORTHO05D009074 4.6e-07 57.4 58 44.8
Aqoxy6G01551 Aquilegia oxysepala HOM05D007252 ORTHO05D009074 6.1e-07 57.0 54 53.7
BcaB03g12504 Brassica carinata HOM05D007252 ORTHO05D009074 6.1e-07 57.0 56 50.0
BcaC09g50629 Brassica carinata HOM05D007252 ORTHO05D009074 6.1e-07 57.0 56 50.0
BcaC09g52252 Brassica carinata HOM05D007252 ORTHO05D009074 6.1e-07 57.0 56 50.0
A08p20750 Brassica napus HOM05D007252 ORTHO05D009074 6.1e-07 57.0 56 50.0
C01p22730 Brassica napus HOM05D007252 ORTHO05D009074 6.1e-07 57.0 56 50.0
BolC1t02202H Brassica oleracea HOM05D007252 ORTHO05D009074 6.1e-07 57.0 56 50.0
CARHR234280 Cardamine hirsuta HOM05D007252 ORTHO05D009074 6.1e-07 57.0 56 48.2
Aa31LG5G12260 Aethionema arabicum HOM05D007252 ORTHO05D009074 7.9e-07 56.6 56 48.2
A01p17930 Brassica napus HOM05D007252 ORTHO05D009074 1.8e-06 55.5 56 48.2
BraA01t01748Z Brassica rapa HOM05D007252 ORTHO05D009074 1.8e-06 55.5 56 48.2
BraA08t34029Z Brassica rapa HOM05D007252 ORTHO05D009074 1.8e-06 55.5 56 48.2
ECA240G2584 Erigeron canadensis HOM05D007252 ORTHO05D009074 1.8e-06 55.5 56 50.0
Lj6g0008035 Lotus japonicus HOM05D007252 ORTHO05D009074 1.8e-06 55.5 60 48.3
AL7G26180 Arabidopsis lyrata HOM05D007252 ORTHO05D009074 2.3e-06 55.1 56 46.4
Migut.M01689 Erythranthe guttata HOM05D007252 ORTHO05D009074 2.3e-06 55.1 60 46.7
CAN.G337.42 Capsicum annuum HOM05D007252 ORTHO05D009074 3.0e-06 54.7 56 44.6
Ca_20134_v3 Cicer arietinum L. HOM05D007252 ORTHO05D009074 3.0e-06 54.7 60 45.0
Carub.0007s1418 Capsella rubella HOM05D007252 ORTHO05D009074 3.9e-06 54.3 56 46.4
Sed0008758 Sechium edule HOM05D007252 ORTHO05D009074 3.9e-06 54.3 61 45.9
Actinidia39080 Actinidia chinensis HOM05D007252 ORTHO05D009074 6.7e-06 53.5 60 46.7
Lalb_Chr15g0081811 Lupinus albus HOM05D007252 ORTHO05D009074 6.7e-06 53.5 60 45.0
Lalb_Chr15g0081831 Lupinus albus HOM05D007252 ORTHO05D009074 8.8e-06 53.1 60 43.3
Lalb_Chr15g0081851 Lupinus albus HOM05D007252 ORTHO05D009074 8.8e-06 53.1 60 43.3
Lalb_Chr15g0081871 Lupinus albus HOM05D007252 ORTHO05D009074 8.8e-06 53.1 60 43.3
SHI26548 Sapria himalayana HOM05D007252 ORTHO05D009074 8.8e-06 53.1 57 43.9
PGSC0003DMG402022195 Solanum tuberosum HOM05D007252 ORTHO05D009074 8.8e-06 53.1 60 41.7


User provided reference genes

Program Settings