Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0009058 Lotus japonicus HOM05D007406 ORTHO05D009434 1.5e-116 422.9 221 100.0
TPR.G13149 Trifolium pratense HOM05D007406 ORTHO05D009434 2.0e-97 359.4 219 85.4
Ca_06987_v3 Cicer arietinum L. HOM05D007406 ORTHO05D009434 1.9e-95 352.8 221 83.3
VMungo0647G2305 Vigna mungo HOM05D007406 ORTHO05D009434 7.1e-95 350.9 221 84.6
Glyma.14G090300 Glycine max HOM05D007406 ORTHO05D009434 9.6e-92 340.5 221 81.0
Lalb_Chr14g0368031 Lupinus albus HOM05D007406 ORTHO05D009434 2.1e-91 339.3 221 81.0
Medtr1g017290 Medicago truncatula HOM05D007406 ORTHO05D009434 4.8e-91 338.2 222 79.7
Phvul.001G031500 Phaseolus vulgaris HOM05D007406 ORTHO05D009434 1.8e-90 336.3 226 82.3
arahy.Tifrunner.gnm1.ann1.GL3N7R Arachis hypogaea HOM05D007406 ORTHO05D009434 4.2e-87 325.1 221 75.1
arahy.Tifrunner.gnm1.ann1.V0H9ZK Arachis hypogaea HOM05D007406 ORTHO05D009434 3.7e-83 312.0 221 73.3
TWI36G1291 Tripterygium wilfordii HOM05D007406 ORTHO05D009434 1.5e-81 306.6 222 73.9
MD15G1064200 Malus domestica HOM05D007406 ORTHO05D009434 2.6e-81 305.8 219 74.0
TAR628G0119 Trochodendron aralioides HOM05D007406 ORTHO05D009434 2.6e-81 305.8 220 74.5
Prupe.1G418200 Prunus persica HOM05D007406 ORTHO05D009434 1.0e-80 303.9 223 74.4
CANSAT25G0188 Cannabis sativa HOM05D007406 ORTHO05D009434 1.9e-79 299.7 221 72.4
FAN24G2334 Fragaria x ananassa HOM05D007406 ORTHO05D009434 1.9e-79 299.7 223 72.6
Thecc.08G083300 Theobroma cacao HOM05D007406 ORTHO05D009434 1.9e-79 299.7 222 73.0
CiPaw.08G053000 Carya illinoinensis HOM05D007406 ORTHO05D009434 5.5e-79 298.1 221 71.9
ClCG05G017610 Citrullus lanatus HOM05D007406 ORTHO05D009434 5.5e-79 298.1 220 71.8
FvH4_2g32510 Fragaria vesca HOM05D007406 ORTHO05D009434 1.2e-78 297.0 223 72.2
RcHm_v2.0_Chr6g0310141 Rosa chinensis HOM05D007406 ORTHO05D009434 2.1e-78 296.2 223 71.7
Manes.18G050400 Manihot esculenta HOM05D007406 ORTHO05D009434 4.6e-78 295.0 222 73.0
Prupe.6G207800 Prunus persica HOM05D007406 ORTHO05D009434 1.4e-77 293.5 210 74.3
FAN27G1006 Fragaria x ananassa HOM05D007406 ORTHO05D009434 1.8e-77 293.1 222 70.7
Duzib041G0608 Durio zibethinus HOM05D007406 ORTHO05D009434 2.3e-77 292.7 222 72.1
Atru.chr13.879 Acer truncatum HOM05D007406 ORTHO05D009434 3.9e-77 292.0 221 71.5
Cfa013727 Carpinus fangiana HOM05D007406 ORTHO05D009434 5.1e-77 291.6 222 72.5
DCAR_020070 Daucus carota HOM05D007406 ORTHO05D009434 6.7e-77 291.2 222 68.5
MELO3C016844.2 Cucumis melo HOM05D007406 ORTHO05D009434 1.5e-76 290.0 220 69.5
Potri.002G114400 Populus trichocarpa HOM05D007406 ORTHO05D009434 3.3e-76 288.9 223 72.2
Ciclev10002365m.g Citrus clementina HOM05D007406 ORTHO05D009434 5.7e-76 288.1 222 68.9
Gohir.D02G087800 Gossypium hirsutum HOM05D007406 ORTHO05D009434 7.4e-76 287.7 222 70.7
Gorai.005G098400 Gossypium raimondii HOM05D007406 ORTHO05D009434 7.4e-76 287.7 222 70.7
Hma1.2p1_1926F.1_g307730 Hydrangea macrophylla HOM05D007406 ORTHO05D009434 7.4e-76 287.7 220 72.3
Sed0009876 Sechium edule HOM05D007406 ORTHO05D009434 9.7e-76 287.3 220 70.9
CAN.G416.4 Capsicum annuum HOM05D007406 ORTHO05D009434 2.8e-75 285.8 218 69.3
Cpa.g.sc160.29 Carica papaya HOM05D007406 ORTHO05D009434 3.7e-75 285.4 222 68.5
Sopen04g031040 Solanum pennellii HOM05D007406 ORTHO05D009434 4.8e-75 285.0 218 69.7
Solyc04g077450.3 Solanum lycopersicum HOM05D007406 ORTHO05D009434 2.4e-74 282.7 218 69.3
Gohir.A02G079900 Gossypium hirsutum HOM05D007406 ORTHO05D009434 4.1e-74 282.0 222 69.8
HanXRQChr08g0226371 Helianthus annuus HOM05D007406 ORTHO05D009434 4.1e-74 282.0 221 69.2
Haze_22374 Corylus avellana HOM05D007406 ORTHO05D009434 4.5e-73 278.5 250 64.4
Thhalv10021516m.g Eutrema salsugineum HOM05D007406 ORTHO05D009434 4.5e-73 278.5 218 67.4
Cc10_g07740 Coffea canephora HOM05D007406 ORTHO05D009434 1.3e-72 276.9 221 67.4
Sp3g10440 Schrenkiella parvula HOM05D007406 ORTHO05D009434 1.3e-72 276.9 218 67.4
Nn6g34540 Nelumbo nucifera HOM05D007406 ORTHO05D009434 1.7e-72 276.6 222 65.8
BolC5t34221H Brassica oleracea HOM05D007406 ORTHO05D009434 2.2e-72 276.2 221 67.0
BraA05t22509Z Brassica rapa HOM05D007406 ORTHO05D009434 2.9e-72 275.8 221 67.4
vmacro21408 Vaccinium macrocarpon HOM05D007406 ORTHO05D009434 3.8e-72 275.4 245 62.9
Actinidia10229 Actinidia chinensis HOM05D007406 ORTHO05D009434 5.0e-72 275.0 204 71.1
AL3G23880 Arabidopsis lyrata HOM05D007406 ORTHO05D009434 5.0e-72 275.0 219 67.1
Carub.0003s1158 Capsella rubella HOM05D007406 ORTHO05D009434 5.0e-72 275.0 219 66.2
PSO017G2718 Papaver somniferum HOM05D007406 ORTHO05D009434 4.2e-71 271.9 221 67.0
PGR031G1333 Punica granatum HOM05D007406 ORTHO05D009434 4.2e-71 271.9 229 65.5
Migut.N02801 Erythranthe guttata HOM05D007406 ORTHO05D009434 5.5e-71 271.6 219 66.2
Aqoxy6G02928 Aquilegia oxysepala HOM05D007406 ORTHO05D009434 7.2e-71 271.2 220 66.8
THA.LOC104799833 Tarenaya hassleriana HOM05D007406 ORTHO05D009434 7.2e-71 271.2 191 71.7
AT3G12210 Arabidopsis thaliana HOM05D007406 ORTHO05D009434 1.2e-70 270.4 219 65.8
Eucgr.F02216 Eucalyptus grandis HOM05D007406 ORTHO05D009434 1.0e-69 267.3 222 66.2
AUR62034986 Chenopodium quinoa HOM05D007406 ORTHO05D009434 8.8e-69 264.2 220 65.0
Lsat_1_v5_gn_1_721 Lactuca sativa HOM05D007406 ORTHO05D009434 8.8e-69 264.2 200 70.5
Hund05268 Selenicereus undatus HOM05D007406 ORTHO05D009434 5.7e-68 261.5 218 66.5
ECA247G1434 Erigeron canadensis HOM05D007406 ORTHO05D009434 1.4e-66 256.9 222 63.1
MBI16_g35726_MAGBIO Magnolia biondii HOM05D007406 ORTHO05D009434 3.1e-66 255.8 235 61.3
SalBow2G1084 Salvia bowleyana HOM05D007406 ORTHO05D009434 5.3e-66 255.0 221 61.5
MSTRG.22203 Avicennia marina HOM05D007406 ORTHO05D009434 9.1e-66 254.2 220 62.7
Rhsim06G0065300 Rhododendron simsii HOM05D007406 ORTHO05D009434 1.2e-65 253.8 171 76.0
Aa31LG11G6470 Aethionema arabicum HOM05D007406 ORTHO05D009434 4.5e-65 251.9 216 63.4
ATR0739G008 Amborella trichopoda HOM05D007406 ORTHO05D009434 4.5e-65 251.9 220 60.5
Ah.05g166920 Amaranthus hybridus HOM05D007406 ORTHO05D009434 2.9e-64 249.2 220 62.3
COL.COLO4_28451 Corchorus olitorius HOM05D007406 ORTHO05D009434 2.9e-64 249.2 197 68.5
CsaV3_4G035340 Cucumis sativus L. HOM05D007406 ORTHO05D009434 5.0e-64 248.4 171 72.5
Sabra02G0090500 Salix brachista HOM05D000717 ORTHO05D000555 5.0e-64 248.4 171 74.9
BcaC05g29272 Brassica carinata HOM05D007406 ORTHO05D009434 1.1e-63 247.3 171 71.9
PSO170G2494 Papaver somniferum HOM05D007406 ORTHO05D009434 1.5e-63 246.9 187 69.5
CSS0019783 Camellia sinensis var. sinensis HOM05D007406 ORTHO05D009434 4.2e-63 245.4 171 73.7
EL10Ac1g02342 Beta vulgaris HOM05D007406 ORTHO05D009434 5.5e-63 245.0 220 62.7
Zm00001eb215640 Zea mays HOM05D007406 ORTHO05D009434 9.4e-63 244.2 216 60.6
Nitab4.5_0007871g0020 Nicotiana tabacum HOM05D007406 ORTHO05D009434 1.6e-62 243.4 218 62.8
Oeu053653.1 Olea europaea HOM05D007406 ORTHO05D009434 4.0e-61 238.8 174 69.5
SGA_v2.0_scaffold28G11843 Striga asiatica HOM05D007406 ORTHO05D009434 7.5e-60 234.6 221 59.7
Lj4C76T9 Lonicera japonica HOM05D007406 ORTHO05D009434 1.8e-58 229.9 159 74.8
Peaxi162Scf01161g00328 Petunia axillaris HOM05D007406 ORTHO05D009434 8.5e-56 221.1 218 56.9
CARHR086780 Cardamine hirsuta HOM05D007406 ORTHO05D009434 5.7e-52 208.4 142 72.5
GSVIVG01009288001 Vitis vinifera HOM05D007406 ORTHO05D009434 6.3e-51 204.9 156 73.1
SEGI_23576 Sequoiadendron giganteum HOM05D007406 ORTHO05D009434 4.1e-50 202.2 230 52.6
Pp3c10_2700 Physcomitrium patens HOM05D007406 ORTHO05D009434 4.5e-49 198.7 223 52.0
CDE04G3630 Ceratophyllum demersum HOM05D007406 ORTHO05D009434 2.5e-47 193.0 144 67.4
AUR62039350 Chenopodium quinoa HOM05D007406 ORTHO05D009434 1.5e-44 183.7 155 66.5
C05p55550 Brassica napus HOM05D007406 ORTHO05D004372 9.2e-42 174.5 213 52.1
Nitab4.5_0001494g0090 Nicotiana tabacum HOM05D007406 ORTHO05D009434 1.2e-41 174.1 218 48.2
Sc15g0005330 Simmondsia chinensis HOM05D007406 ORTHO05D009434 1.2e-41 174.1 140 63.6
A05p37120 Brassica napus HOM05D007406 ORTHO05D004372 2.0e-41 173.3 145 68.3
Aa31sc118G30 Aethionema arabicum HOM05D007406 ORTHO05D009434 1.6e-25 120.6 96 66.7
Hma1.2p1_1926F.1_g307740 Hydrangea macrophylla HOM05D007406 ORTHO05D009434 3.3e-23 112.8 80 75.0
Hma1.2p1_2378F.1_g320925 Hydrangea macrophylla HOM05D007406 ORTHO05D009434 3.3e-23 112.8 80 75.0
Dinv39200 Davidia involucrata HOM05D007406 ORTHO05D009434 1.5e-20 104.0 73 80.8
Psat0s3650g0120 Pisum sativum HOM05D007406 ORTHO05D009434 1.4e-18 97.4 59 83.1
MCO14G094 Micromonas commoda HOM05D007406 ORTHO05D009434 4.1e-18 95.9 217 35.0
Os03g0728600 Oryza sativa ssp. japonica HOM05D007406 ORTHO05D009434 1.8e-13 80.5 77 48.1
Sc15g0005340 Simmondsia chinensis HOM05D007406 ORTHO05D009434 1.8e-13 80.5 77 59.7
PRCOL_00000641 Prasinoderma coloniale HOM05D007406 ORTHO05D009434 4.0e-13 79.3 189 34.9
Cre10.g466400 Chlamydomonas reinhardtii HOM05D007406 ORTHO05D009434 4.1e-10 69.3 161 36.6


User provided reference genes

Program Settings