Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0008999 Lotus japonicus HOM05D004451 ORTHO05D005177 1.5e-153 546.2 290 100.0
Glyma.20G129100 Glycine max HOM05D004451 ORTHO05D005177 8.1e-123 444.1 290 83.8
Psat6g219200 Pisum sativum HOM05D004451 ORTHO05D005177 4.0e-122 441.8 290 84.1
Phvul.007G040300 Phaseolus vulgaris HOM05D004451 ORTHO05D005177 1.2e-121 440.3 290 83.8
Medtr1g107450 Medicago truncatula HOM05D004451 ORTHO05D005177 2.6e-121 439.1 290 83.1
Ca_11078_v3 Cicer arietinum L. HOM05D004451 ORTHO05D005177 1.1e-119 433.7 291 83.2
arahy.Tifrunner.gnm1.ann1.BMM90D Arachis hypogaea HOM05D004451 ORTHO05D005177 4.6e-118 428.3 294 82.0
Glyma.10G261800 Glycine max HOM05D004451 ORTHO05D005177 7.9e-118 427.6 291 81.8
arahy.Tifrunner.gnm1.ann1.S5NBXN Arachis hypogaea HOM05D004451 ORTHO05D005177 1.0e-117 427.2 294 82.0
VMungo0720G2723 Vigna mungo HOM05D004451 ORTHO05D005177 2.3e-117 426.0 288 82.3
Lalb_Chr06g0165471 Lupinus albus HOM05D004451 ORTHO05D005177 1.3e-107 393.7 289 77.2
Lalb_Chr02g0145321 Lupinus albus HOM05D004451 ORTHO05D005177 2.9e-104 382.5 293 76.1
Prupe.8G134600 Prunus persica HOM05D004451 ORTHO05D005177 1.6e-99 366.7 294 70.1
MD05G1088600 Malus domestica HOM05D004451 ORTHO05D005177 6.3e-99 364.8 296 71.3
GSVIVG01003161001 Vitis vinifera HOM05D004451 ORTHO05D005177 6.3e-99 364.8 304 69.4
Thecc.02G107400 Theobroma cacao HOM05D004451 ORTHO05D005177 1.1e-98 364.0 292 70.5
Hma1.2p1_0796F.1_g219180 Hydrangea macrophylla HOM05D004451 ORTHO05D005177 1.2e-97 360.5 299 70.9
Atru.chr5.2587 Acer truncatum HOM05D004451 ORTHO05D005177 4.5e-97 358.6 290 72.8
Oeu010397.1 Olea europaea HOM05D004451 ORTHO05D005177 1.3e-96 357.1 290 69.3
Haze_10166 Corylus avellana HOM05D004451 ORTHO05D005177 2.9e-96 355.9 294 69.7
Cc02_g19230 Coffea canephora HOM05D004451 ORTHO05D005177 1.4e-95 353.6 299 69.2
Cfa004574 Carpinus fangiana HOM05D004451 ORTHO05D005177 2.5e-95 352.8 292 69.2
ECA234G3549 Erigeron canadensis HOM05D004451 ORTHO05D005177 2.5e-95 352.8 293 68.9
Gohir.A13G043700 Gossypium hirsutum HOM05D004451 ORTHO05D005177 2.5e-95 352.8 295 69.2
TAR381G0562 Trochodendron aralioides HOM05D004451 ORTHO05D005177 2.5e-95 352.8 299 68.9
Gohir.D13G042200 Gossypium hirsutum HOM05D004451 ORTHO05D005177 5.5e-95 351.7 297 68.4
Manes.07G069100 Manihot esculenta HOM05D004451 ORTHO05D005177 5.5e-95 351.7 297 68.7
Oeu018597.1 Olea europaea HOM05D004451 ORTHO05D005177 7.2e-95 351.3 290 68.3
Ciclev10029016m.g Citrus clementina HOM05D004451 ORTHO05D005177 9.4e-95 350.9 291 70.8
Gorai.013G047100 Gossypium raimondii HOM05D004451 ORTHO05D005177 2.7e-94 349.4 295 68.1
Nn1g04705 Nelumbo nucifera HOM05D004451 ORTHO05D005177 3.6e-94 349.0 292 68.2
Manes.10G076300 Manihot esculenta HOM05D004451 ORTHO05D005177 4.6e-94 348.6 293 69.6
Actinidia17478 Actinidia chinensis HOM05D004451 ORTHO05D005177 6.1e-94 348.2 298 67.8
RcHm_v2.0_Chr6g0255371 Rosa chinensis HOM05D004451 ORTHO05D005177 7.9e-94 347.8 293 67.9
ClCG02G006310 Citrullus lanatus HOM05D004451 ORTHO05D005177 1.0e-93 347.4 305 66.9
Duzib248G1610 Durio zibethinus HOM05D004451 ORTHO05D005177 1.0e-93 347.4 294 68.7
COL.COLO4_32599 Corchorus olitorius HOM05D004451 ORTHO05D005177 1.4e-93 347.1 293 69.3
Potri.009G096300 Populus trichocarpa HOM05D004451 ORTHO05D005177 1.8e-93 346.7 297 68.0
CANSAT25G2876 Cannabis sativa HOM05D004451 ORTHO05D005177 2.3e-93 346.3 297 69.0
MD10G1096700 Malus domestica HOM05D004451 ORTHO05D005177 2.3e-93 346.3 291 68.4
CANSAT25G0591 Cannabis sativa HOM05D004451 ORTHO05D005177 3.0e-93 345.9 297 69.0
CSS0044080 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 3.9e-93 345.5 294 69.4
CsaV3_7G008120 Cucumis sativus L. HOM05D004451 ORTHO05D005177 5.1e-93 345.1 297 67.7
PGR142G3187 Punica granatum HOM05D004451 ORTHO05D005177 5.1e-93 345.1 297 69.7
CiPaw.05G011200 Carya illinoinensis HOM05D004451 ORTHO05D005177 6.7e-93 344.7 293 67.9
Cpa.g.sc106.89 Carica papaya HOM05D004451 ORTHO05D005177 1.5e-92 343.6 301 68.4
Actinidia00412 Actinidia chinensis HOM05D004451 ORTHO05D005177 2.0e-92 343.2 300 66.0
Nitab4.5_0002815g0090 Nicotiana tabacum HOM05D004451 ORTHO05D005177 2.0e-92 343.2 293 68.6
QL11p033916 Quercus lobata HOM05D004451 ORTHO05D005177 2.6e-92 342.8 294 67.3
Gorai.005G235200 Gossypium raimondii HOM05D004451 ORTHO05D005177 3.3e-92 342.4 295 68.1
Lj9C321G12 Lonicera japonica HOM05D004451 ORTHO05D005177 3.3e-92 342.4 208 85.1
SGA_v2.0_scaffold32G13039 Striga asiatica HOM05D004451 ORTHO05D005177 3.3e-92 342.4 296 65.9
SalBow6G6827 Salvia bowleyana HOM05D004451 ORTHO05D005177 4.4e-92 342.0 297 68.4
CSS0017890 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 5.7e-92 341.7 299 67.9
Potri.001G300500 Populus trichocarpa HOM05D004451 ORTHO05D005177 5.7e-92 341.7 299 68.2
Sed0013348 Sechium edule HOM05D004451 ORTHO05D005177 7.4e-92 341.3 297 68.4
PGSC0003DMG400025865 Solanum tuberosum HOM05D004451 ORTHO05D005177 7.4e-92 341.3 294 69.0
TAR628G0195 Trochodendron aralioides HOM05D004451 ORTHO05D005177 7.4e-92 341.3 215 82.3
CSS0019678 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 9.7e-92 340.9 312 67.0
Gohir.A03G186500 Gossypium hirsutum HOM05D004451 ORTHO05D005177 9.7e-92 340.9 296 67.9
TWI79G0876 Tripterygium wilfordii HOM05D004451 ORTHO05D005177 9.7e-92 340.9 299 67.9
Actinidia05493 Actinidia chinensis HOM05D004451 ORTHO05D005177 1.7e-91 340.1 287 66.6
MELO3C018494.2 Cucumis melo HOM05D004451 ORTHO05D005177 2.8e-91 339.3 306 65.4
Gohir.D02G207300 Gossypium hirsutum HOM05D004451 ORTHO05D005177 2.8e-91 339.3 297 67.7
AUR62039084 Chenopodium quinoa HOM05D004451 ORTHO05D005177 3.7e-91 339.0 297 68.7
vmacro19448 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 3.7e-91 339.0 298 67.1
FvH4_2g05240 Fragaria vesca HOM05D004451 ORTHO05D005177 8.2e-91 337.8 293 67.2
Nitab4.5_0005392g0030 Nicotiana tabacum HOM05D004451 ORTHO05D005177 8.2e-91 337.8 287 68.3
FAN20G1574 Fragaria x ananassa HOM05D004451 ORTHO05D005177 1.1e-90 337.4 294 66.7
Sed0001090 Sechium edule HOM05D004451 ORTHO05D005177 1.1e-90 337.4 309 65.7
Rhsim05G0088400 Rhododendron simsii HOM05D004451 ORTHO05D005177 1.4e-90 337.0 302 67.2
Duzib132G0413 Durio zibethinus HOM05D004451 ORTHO05D005177 1.8e-90 336.7 292 66.4
Aqoxy5G01146 Aquilegia oxysepala HOM05D004451 ORTHO05D005177 3.1e-90 335.9 295 67.1
PSO210G2671 Papaver somniferum HOM05D004451 ORTHO05D005177 5.3e-90 335.1 264 73.1
FAN27G3473 Fragaria x ananassa HOM05D004451 ORTHO05D005177 9.1e-90 334.3 294 66.3
PSO170G0588 Papaver somniferum HOM05D004451 ORTHO05D005177 9.1e-90 334.3 264 73.1
MSTRG.20184 Avicennia marina HOM05D004451 ORTHO05D005177 2.6e-89 332.8 297 65.7
HanXRQChr16g0514851 Helianthus annuus HOM05D004451 ORTHO05D005177 7.7e-89 331.3 295 64.4
Migut.B00385 Erythranthe guttata HOM05D004451 ORTHO05D005177 1.0e-88 330.9 298 64.8
FAN15G2242 Fragaria x ananassa HOM05D004451 ORTHO05D005177 1.0e-88 330.9 306 64.7
FAN24G2858 Fragaria x ananassa HOM05D004451 ORTHO05D005177 1.3e-88 330.5 291 68.0
Solyc01g107640.3 Solanum lycopersicum HOM05D004451 ORTHO05D005177 1.3e-88 330.5 298 66.4
Sopen01g049830 Solanum pennellii HOM05D004451 ORTHO05D005177 1.3e-88 330.5 300 67.3
AUR62010302 Chenopodium quinoa HOM05D004451 ORTHO05D005177 2.2e-88 329.7 302 67.2
TWI31G0226 Tripterygium wilfordii HOM05D004451 ORTHO05D005177 5.0e-88 328.6 297 66.0
Nn5g30419 Nelumbo nucifera HOM05D004451 ORTHO05D005177 1.9e-87 326.6 298 64.8
MSTRG.16716 Avicennia marina HOM05D004451 ORTHO05D005177 4.2e-87 325.5 297 65.3
CiPaw.06G169600 Carya illinoinensis HOM05D004451 ORTHO05D005177 7.2e-87 324.7 301 64.8
HanXRQChr10g0292341 Helianthus annuus HOM05D004451 ORTHO05D005177 9.4e-87 324.3 283 66.1
EL10Ac9g22281 Beta vulgaris HOM05D004451 ORTHO05D005177 1.6e-86 323.6 292 65.4
Sabra09G0074000 Salix brachista HOM05D004451 ORTHO05D005177 4.7e-86 322.0 351 59.0
SGA_v2.0_scaffold225G43078 Striga asiatica HOM05D004451 ORTHO05D005177 4.7e-86 322.0 289 65.7
Sabra16G0188700 Salix brachista HOM05D004451 ORTHO05D005177 6.1e-86 321.6 357 56.3
AT2G15290 Arabidopsis thaliana HOM05D004451 ORTHO05D005177 7.9e-86 321.2 297 62.6
C07p08470 Brassica napus HOM05D004451 ORTHO05D005177 1.8e-85 320.1 229 74.2
Hund06320 Selenicereus undatus HOM05D004451 ORTHO05D005177 1.8e-85 320.1 301 65.1
BcaB03g16278 Brassica carinata HOM05D004451 ORTHO05D005177 3.0e-85 319.3 229 74.2
Carub.0003s2912 Capsella rubella HOM05D004451 ORTHO05D005177 5.2e-85 318.5 295 63.7
Aa31LG8G13140 Aethionema arabicum HOM05D004451 ORTHO05D005177 8.8e-85 317.8 304 63.2
BolC7t41261H Brassica oleracea HOM05D004451 ORTHO05D005177 8.8e-85 317.8 229 74.2
THA.LOC104819557 Tarenaya hassleriana HOM05D004451 ORTHO05D005177 8.8e-85 317.8 308 63.6
Peaxi162Scf00016g02324 Petunia axillaris HOM05D004451 ORTHO05D005177 1.1e-84 317.4 291 64.9
Sp3g28570 Schrenkiella parvula HOM05D004451 ORTHO05D005177 2.6e-84 316.2 292 64.0
Hund00148 Selenicereus undatus HOM05D004451 ORTHO05D005177 2.6e-84 316.2 301 62.1
AL3G47010 Arabidopsis lyrata HOM05D004451 ORTHO05D005177 5.7e-84 315.1 297 62.6
CARHR105660 Cardamine hirsuta HOM05D004451 ORTHO05D005177 5.7e-84 315.1 295 62.4
Lsat_1_v5_gn_5_114881 Lactuca sativa HOM05D004451 ORTHO05D005177 5.7e-84 315.1 284 65.5
BcaB07g31794 Brassica carinata HOM05D004451 ORTHO05D005177 7.4e-84 314.7 292 63.0
Thhalv10022775m.g Eutrema salsugineum HOM05D004451 ORTHO05D005177 7.4e-84 314.7 286 63.6
BcaC06g36051 Brassica carinata HOM05D004451 ORTHO05D005177 1.7e-83 313.5 295 62.7
BcaB08g34587 Brassica carinata HOM05D004451 ORTHO05D005177 2.2e-83 313.2 291 63.2
DCAR_001641 Daucus carota HOM05D004451 ORTHO05D005177 2.2e-83 313.2 193 82.4
CDE04G0259 Ceratophyllum demersum HOM05D004451 ORTHO05D005177 6.3e-83 311.6 195 82.6
Dinv15761 Davidia involucrata HOM05D004451 ORTHO05D005177 1.8e-82 310.1 272 64.0
A07p05320 Brassica napus HOM05D004451 ORTHO05D005177 4.1e-82 308.9 298 62.4
BolC9t54158H Brassica oleracea HOM05D004451 ORTHO05D005177 4.1e-82 308.9 298 61.7
BraA07t28325Z Brassica rapa HOM05D004451 ORTHO05D005177 4.1e-82 308.9 298 62.4
A09p10690 Brassica napus HOM05D004451 ORTHO05D005177 2.0e-81 306.6 299 60.9
C09p12690 Brassica napus HOM05D004451 ORTHO05D005177 3.5e-81 305.8 290 62.4
Rhsim11G0160300 Rhododendron simsii HOM05D004451 ORTHO05D005177 1.7e-80 303.5 192 81.8
Ah.01g018220 Amaranthus hybridus HOM05D004451 ORTHO05D005177 1.1e-79 300.8 310 59.0
Eucgr.E02954 Eucalyptus grandis HOM05D004451 ORTHO05D005177 8.0e-78 294.7 289 64.0
THA.LOC104807244 Tarenaya hassleriana HOM05D004451 ORTHO05D005177 5.2e-77 292.0 283 62.5
HPP92_004770 Vanilla planifolia HOM05D004451 ORTHO05D005177 6.7e-77 291.6 297 58.9
BcaC06g31580 Brassica carinata HOM05D004451 ORTHO05D005177 3.3e-76 289.3 193 79.3
Os02g0187600 Oryza sativa ssp. japonica HOM05D004451 ORTHO05D005177 1.7e-75 287.0 280 61.1
SEGI_03021 Sequoiadendron giganteum HOM05D004451 ORTHO05D005177 2.4e-74 283.1 203 72.9
vmacro19524 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 2.4e-74 283.1 329 54.7
Os06g0638100 Oryza sativa ssp. japonica HOM05D004451 ORTHO05D005177 3.1e-74 282.7 198 75.3
Zm00001eb206410 Zea mays HOM05D004451 ORTHO05D005177 9.1e-74 281.2 182 79.7
Pp3c27_4260 Physcomitrium patens HOM05D004451 ORTHO05D005177 2.2e-72 276.6 203 72.4
Sc17g0003020 Simmondsia chinensis HOM05D004451 ORTHO05D005177 2.2e-72 276.6 283 61.5
BraA09t36712Z Brassica rapa HOM05D004451 ORTHO05D005177 5.5e-71 271.9 357 50.7
Zm00001eb387350 Zea mays HOM05D004451 ORTHO05D005177 2.7e-70 269.6 196 73.0
Mapoly0049s0087 Marchantia polymorpha HOM05D004451 ORTHO05D005177 1.0e-69 267.7 198 71.2
DCAR_021989 Daucus carota HOM05D004451 ORTHO05D005177 1.8e-69 266.9 255 60.8
ECA240G4367 Erigeron canadensis HOM05D004451 ORTHO05D005177 2.3e-69 266.5 278 60.4
Pp3c1_21740 Physcomitrium patens HOM05D004451 ORTHO05D005177 2.3e-69 266.5 298 54.4
unitig_22.g5194 Utricularia gibba HOM05D004451 ORTHO05D005177 5.7e-68 261.9 290 53.8
Pp3c10_9500 Physcomitrium patens HOM05D004451 ORTHO05D005177 2.8e-67 259.6 301 51.5
BcaC04g23051 Brassica carinata HOM05D005496 ORTHO05D006677 3.7e-67 259.2 260 60.0
ATR0691G207 Amborella trichopoda HOM05D004451 ORTHO05D005177 8.3e-67 258.1 210 68.6
AagrBONN_evm.TU.Sc2ySwM_344.1281 Anthoceros agrestis HOM05D004451 ORTHO05D005177 4.1e-66 255.8 292 52.7
unitig_8.g3679 Utricularia gibba HOM05D004451 ORTHO05D005177 1.3e-59 234.2 309 49.8
SMO118G0560 Selaginella moellendorffii HOM05D004451 ORTHO05D005177 2.9e-56 223.0 181 63.5
CBR_g39267 Chara braunii HOM05D004451 ORTHO05D005177 2.3e-53 213.4 196 60.2
CDE06G1648 Ceratophyllum demersum HOM05D004451 ORTHO05D005177 9.2e-50 201.4 209 56.5
SHI05289 Sapria himalayana HOM05D004451 ORTHO05D005177 3.3e-47 193.0 192 56.8
vmacro02006 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 3.6e-46 189.5 193 58.0
TAR381G0937 Trochodendron aralioides HOM05D004451 ORTHO05D005177 4.6e-41 172.6 107 87.9
Zm00001eb234680 Zea mays HOM05D004451 ORTHO05D005177 7.8e-41 171.8 298 43.6
MCO10G127 Micromonas commoda HOM05D004451 ORTHO05D005177 2.1e-33 147.1 182 46.2
CAN.G1231.10 Capsicum annuum HOM05D004451 ORTHO05D005177 1.0e-32 144.8 89 76.4
SEGI_11302 Sequoiadendron giganteum HOM05D004451 ORTHO05D005177 1.9e-31 140.6 101 70.3
Cre10.g454734 Chlamydomonas reinhardtii HOM05D000133 ORTHO05D005177 9.9e-28 128.3 265 37.0
PRCOL_00004645 Prasinoderma coloniale HOM05D004451 ORTHO05D005177 4.6e-25 119.4 183 42.1
HPP92_008279 Vanilla planifolia HOM05D004451 ORTHO05D005177 1.0e-24 118.2 166 48.2
CAN.G3385.1 Capsicum annuum HOM05D004451 ORTHO05D005177 1.1e-23 114.8 78 80.8
HanXRQChr01g0018911 Helianthus annuus HOM05D004451 ORTHO05D005177 6.9e-21 105.5 63 81.0
CBR_g28861 Chara braunii HOM05D004451 ORTHO05D009492 8.9e-21 105.1 87 59.8
HanXRQChr17g0567381 Helianthus annuus HOM05D004451 ORTHO05D005177 2.0e-20 104.0 63 79.4
VMungo0251G3374 Vigna mungo HOM05D004451 ORTHO05D005177 1.1e-18 98.2 102 61.8
Cre11.g467759 Chlamydomonas reinhardtii HOM05D027551 ORTHO05D005177 2.8e-14 83.6 179 34.6
HanXRQChr05g0151971 Helianthus annuus HOM05D002664 ORTHO05D002974 4.5e-12 76.3 46 76.1


User provided reference genes

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