Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0008853 Lotus japonicus HOM05D002831 ORTHO05D004341 5.1e-89 331.3 191 100.0
Glyma.20G162500 Glycine max HOM05D002831 ORTHO05D004341 3.2e-67 258.8 191 80.1
Glyma.10G231300 Glycine max HOM05D002831 ORTHO05D004341 7.1e-67 257.7 191 80.6
Lalb_Chr02g0141231 Lupinus albus HOM05D002831 ORTHO05D004341 3.6e-63 245.4 187 75.9
Ca_10728_v3 Cicer arietinum L. HOM05D002831 ORTHO05D004341 2.2e-60 236.1 191 79.1
Glyma.16G179300 Glycine max HOM05D002831 ORTHO05D004341 6.4e-60 234.6 208 74.5
Lalb_Chr06g0161301 Lupinus albus HOM05D002831 ORTHO05D004341 1.1e-59 233.8 191 78.5
Psat6g196360 Pisum sativum HOM05D002831 ORTHO05D004341 4.6e-58 228.4 192 79.7
TPR.G7753 Trifolium pratense HOM05D002831 ORTHO05D004341 4.6e-58 228.4 192 76.6
VMungo0464G0591 Vigna mungo HOM05D002831 ORTHO05D004341 7.9e-58 227.6 208 72.6
Phvul.004G109000 Phaseolus vulgaris HOM05D002831 ORTHO05D004341 3.9e-57 225.3 208 71.6
arahy.Tifrunner.gnm1.ann1.VWVY78 Arachis hypogaea HOM05D002831 ORTHO05D010484 2.8e-55 219.2 210 72.4
VMungo0720G1018 Vigna mungo HOM05D002831 ORTHO05D004341 4.0e-54 215.3 193 73.6
Glyma.09G132500 Glycine max HOM05D002831 ORTHO05D004341 7.6e-53 211.1 209 65.6
Lalb_Chr03g0034811 Lupinus albus HOM05D002831 ORTHO05D004341 1.1e-48 197.2 208 68.3
TPR.G21560 Trifolium pratense HOM05D002831 ORTHO05D004341 3.7e-47 192.2 192 65.6
Lalb_Chr21g0305221 Lupinus albus HOM05D002831 ORTHO05D004341 7.6e-45 184.5 157 79.0
Thecc.03G183700 Theobroma cacao HOM05D002831 ORTHO05D004341 1.5e-40 170.2 205 56.6
Manes.06G152100 Manihot esculenta HOM05D002831 ORTHO05D004341 5.7e-40 168.3 210 61.4
COL.COLO4_10060 Corchorus olitorius HOM05D002831 ORTHO05D004341 7.4e-40 167.9 206 56.3
Duzib068G1050 Durio zibethinus HOM05D002831 ORTHO05D004341 7.4e-40 167.9 205 55.1
Duzib205G1365 Durio zibethinus HOM05D002831 ORTHO05D004341 1.3e-39 167.2 205 55.6
Gohir.D09G177200 Gossypium hirsutum HOM05D002831 ORTHO05D004341 8.2e-39 164.5 205 55.1
Cpa.g.sc107.104 Carica papaya HOM05D002831 ORTHO05D004341 5.3e-38 161.8 208 54.3
Gorai.006G199200 Gossypium raimondii HOM05D002831 ORTHO05D004341 6.9e-38 161.4 205 54.1
Cfa016283 Carpinus fangiana HOM05D002831 ORTHO05D004341 9.1e-38 161.0 206 61.2
Potri.004G079900 Populus trichocarpa HOM05D002831 ORTHO05D004341 9.1e-38 161.0 210 55.2
Duzib084G1013 Durio zibethinus HOM05D002831 ORTHO05D004341 1.5e-37 160.2 204 53.4
Prupe.2G300400 Prunus persica HOM05D002831 ORTHO05D004341 1.3e-36 157.1 204 60.3
Atru.chr1.379 Acer truncatum HOM05D002831 ORTHO05D004341 1.7e-36 156.8 209 56.5
Atru.ctg97_1.16 Acer truncatum HOM05D002831 ORTHO05D004341 1.7e-36 156.8 209 56.5
TWI39G0102 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 3.8e-36 155.6 196 50.5
Medtr1g100090 Medicago truncatula HOM05D002831 ORTHO05D004341 8.5e-36 154.5 141 80.1
CiPaw.06G003300 Carya illinoinensis HOM05D002831 ORTHO05D004341 1.9e-35 153.3 208 59.1
CANSAT11G0421 Cannabis sativa HOM05D002831 ORTHO05D004341 2.5e-35 152.9 209 58.9
TWI23G0387 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 4.2e-35 152.1 208 46.6
CiPaw.06G003100 Carya illinoinensis HOM05D002831 ORTHO05D004341 5.5e-35 151.8 208 58.7
Dinv28390 Davidia involucrata HOM05D002831 ORTHO05D004341 5.5e-35 151.8 198 51.0
Ciclev10005857m.g Citrus clementina HOM05D002831 ORTHO05D004341 7.2e-35 151.4 209 52.2
Gohir.A09G182600 Gossypium hirsutum HOM05D002831 ORTHO05D004341 1.2e-34 150.6 203 53.7
Manes.14G023000 Manihot esculenta HOM05D002831 ORTHO05D004341 1.6e-34 150.2 209 58.4
Peaxi162Scf00444g00016 Petunia axillaris HOM05D002831 ORTHO05D004341 1.0e-33 147.5 207 51.7
TWI14G0525 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 1.0e-33 147.5 202 50.0
Dinv35249 Davidia involucrata HOM05D002831 ORTHO05D004341 1.4e-33 147.1 199 52.3
Hma1.2p1_0274F.1_g110180 Hydrangea macrophylla HOM05D002831 ORTHO05D004341 2.3e-33 146.4 209 55.0
Eucgr.A02748 Eucalyptus grandis HOM05D002831 ORTHO05D004341 3.0e-33 146.0 205 50.7
Potri.017G143215 Populus trichocarpa HOM05D002831 ORTHO05D004341 3.9e-33 145.6 210 52.4
Lj1P1004T73 Lonicera japonica HOM05D002831 ORTHO05D004341 5.1e-33 145.2 197 47.2
Sabra04G0053100 Salix brachista HOM05D002831 ORTHO05D004341 6.7e-33 144.8 209 51.7
MD01G1207900 Malus domestica HOM05D002831 ORTHO05D004341 1.1e-32 144.1 209 56.9
Nitab4.5_0003825g0080 Nicotiana tabacum HOM05D002831 ORTHO05D004341 1.5e-32 143.7 205 51.7
Actinidia34155 Actinidia chinensis HOM05D002831 ORTHO05D004341 5.7e-32 141.7 198 53.0
MD07G1278500 Malus domestica HOM05D002831 ORTHO05D004341 1.3e-31 140.6 209 56.9
Gohir.D12G256900 Gossypium hirsutum HOM05D002831 ORTHO05D004341 2.2e-31 139.8 199 51.3
Gorai.008G275100 Gossypium raimondii HOM05D002831 ORTHO05D004341 2.2e-31 139.8 199 51.3
Sabra17G0120100 Salix brachista HOM05D002831 ORTHO05D004341 2.8e-31 139.4 207 50.7
Gorai.004G117400 Gossypium raimondii HOM05D002831 ORTHO05D004341 4.8e-31 138.7 190 55.8
Sopen06g012030 Solanum pennellii HOM05D002831 ORTHO05D004341 4.8e-31 138.7 206 50.0
Rhsim09G0200400 Rhododendron simsii HOM05D002831 ORTHO05D004341 6.3e-31 138.3 198 52.5
TAR374G0609 Trochodendron aralioides HOM05D002831 ORTHO05D004341 6.3e-31 138.3 206 51.5
PGSC0003DMG400028898 Solanum tuberosum HOM05D002831 ORTHO05D004341 8.2e-31 137.9 206 49.5
Gohir.A12G255500 Gossypium hirsutum HOM05D002831 ORTHO05D004341 1.1e-30 137.5 199 50.8
Actinidia08576 Actinidia chinensis HOM05D002831 ORTHO05D004341 1.4e-30 137.1 190 53.2
QL09p012962 Quercus lobata HOM05D002831 ORTHO05D004341 1.4e-30 137.1 208 54.8
FvH4_7g30190 Fragaria vesca HOM05D002831 ORTHO05D004341 2.4e-30 136.3 209 55.5
FAN06G3328 Fragaria x ananassa HOM05D002831 ORTHO05D004341 2.4e-30 136.3 209 55.5
Gohir.A08G098200 Gossypium hirsutum HOM05D002831 ORTHO05D004341 2.4e-30 136.3 190 55.3
CAN.G126.12 Capsicum annuum HOM05D002831 ORTHO05D004341 5.3e-30 135.2 206 48.1
FAN03G0781 Fragaria x ananassa HOM05D002831 ORTHO05D004341 6.9e-30 134.8 209 55.5
Oeu060465.1 Olea europaea HOM05D002831 ORTHO05D004341 6.9e-30 134.8 201 42.8
Cc02_g02420 Coffea canephora HOM05D002831 ORTHO05D004341 1.5e-29 133.7 198 50.0
DCAR_020268 Daucus carota HOM05D002831 ORTHO05D004341 2.0e-29 133.3 198 43.4
Gohir.D08G109800 Gossypium hirsutum HOM05D002831 ORTHO05D004341 2.0e-29 133.3 190 54.7
Peaxi162Scf00618g00748 Petunia axillaris HOM05D001680 ORTHO05D004341 2.6e-29 132.9 206 48.5
CSS0012099 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 3.4e-29 132.5 206 47.6
CSS0034926 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 3.4e-29 132.5 206 47.6
Gorai.007G012600 Gossypium raimondii HOM05D002831 ORTHO05D004341 3.4e-29 132.5 203 49.3
THA.LOC104800271 Tarenaya hassleriana HOM05D002831 ORTHO05D004341 3.4e-29 132.5 178 45.5
Gohir.D11G011100 Gossypium hirsutum HOM05D002831 ORTHO05D004341 4.5e-29 132.1 203 49.3
FAN01G0089 Fragaria x ananassa HOM05D002831 ORTHO05D004341 5.9e-29 131.7 209 54.5
CSS0004722 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 7.7e-29 131.3 206 44.7
CSS0021117 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 7.7e-29 131.3 206 44.7
Nitab4.5_0000084g0400 Nicotiana tabacum HOM05D002831 ORTHO05D004341 1.0e-28 131.0 206 47.1
vmacro06629 Vaccinium macrocarpon HOM05D002831 ORTHO05D004341 1.3e-28 130.6 198 50.0
Aqoxy7G00243 Aquilegia oxysepala HOM05D002831 ORTHO05D004341 2.2e-28 129.8 206 50.0
Nitab4.5_0000572g0140 Nicotiana tabacum HOM05D002831 ORTHO05D004341 2.2e-28 129.8 206 46.6
FAN10G3196 Fragaria x ananassa HOM05D002831 ORTHO05D004341 2.9e-28 129.4 209 54.5
Gohir.A11G011900 Gossypium hirsutum HOM05D002831 ORTHO05D004341 6.5e-28 128.3 190 51.1
RcHm_v2.0_Chr1g0378241 Rosa chinensis HOM05D002831 ORTHO05D004341 6.5e-28 128.3 198 54.5
Oeu036905.1 Olea europaea HOM05D002831 ORTHO05D004341 8.5e-28 127.9 200 47.0
FAN03G0359 Fragaria x ananassa HOM05D002831 ORTHO05D004341 1.1e-27 127.5 209 54.1
Rhsim03G0190700 Rhododendron simsii HOM05D002831 ORTHO05D004341 1.4e-27 127.1 198 50.0
EL10Ac3g05428 Beta vulgaris HOM05D002831 ORTHO05D004341 4.2e-27 125.6 193 50.3
Sopen03g003930 Solanum pennellii HOM05D002831 ORTHO05D004341 5.5e-27 125.2 207 46.9
CiPaw.12G018300 Carya illinoinensis HOM05D002831 ORTHO05D004341 7.2e-27 124.8 183 55.7
Haze_00039 Corylus avellana HOM05D002831 ORTHO05D004341 9.4e-27 124.4 140 51.4
Actinidia31838 Actinidia chinensis HOM05D002831 ORTHO05D004341 1.2e-26 124.0 204 48.5
PGSC0003DMG400010167 Solanum tuberosum HOM05D002831 ORTHO05D004341 1.6e-26 123.6 198 47.5
AUR62021127 Chenopodium quinoa HOM05D002831 ORTHO05D004341 1.0e-25 120.9 201 40.8
SalBow4G1512 Salvia bowleyana HOM05D002831 ORTHO05D004341 1.4e-25 120.6 198 47.0
PGR042G3073 Punica granatum HOM05D002831 ORTHO05D004341 1.8e-25 120.2 207 48.3
VMungo0251G0932 Vigna mungo HOM05D002831 ORTHO05D004341 1.8e-25 120.2 148 62.2
AUR62031417 Chenopodium quinoa HOM05D002831 ORTHO05D004341 3.0e-25 119.4 201 40.3
Oeu045362.1 Olea europaea HOM05D002831 ORTHO05D004341 3.0e-25 119.4 208 46.2
Solyc06g036250.2 Solanum lycopersicum HOM05D002831 ORTHO05D004341 3.0e-25 119.4 182 48.4
DCAR_009393 Daucus carota HOM05D002831 ORTHO05D004341 6.7e-25 118.2 196 45.4
BraA02t06237Z Brassica rapa HOM05D002831 ORTHO05D004341 2.0e-24 116.7 176 43.8
TAR375G0840 Trochodendron aralioides HOM05D002831 ORTHO05D004341 2.0e-24 116.7 208 52.9
PSO478G4817 Papaver somniferum HOM05D002831 ORTHO05D004341 3.3e-24 115.9 197 44.7
PSO782G2858 Papaver somniferum HOM05D002831 ORTHO05D004341 5.7e-24 115.2 205 43.9
Hma1.2p1_0327F.1_g126410 Hydrangea macrophylla HOM05D002831 ORTHO05D004341 9.7e-24 114.4 205 47.8
THA.LOC104811959 Tarenaya hassleriana HOM05D002831 ORTHO05D004341 1.7e-23 113.6 186 39.2
CARHR233110 Cardamine hirsuta HOM05D002831 ORTHO05D004341 2.2e-23 113.2 191 42.9
Sc19g0001290 Simmondsia chinensis HOM05D002831 ORTHO05D004341 3.7e-23 112.5 190 45.8
Ah.07g206590 Amaranthus hybridus HOM05D002831 ORTHO05D004341 6.3e-23 111.7 193 41.5
A02p11720 Brassica napus HOM05D002831 ORTHO05D004341 8.2e-23 111.3 180 43.3
GSVIVG01028866001 Vitis vinifera HOM05D002831 ORTHO05D010484 8.2e-23 111.3 192 55.2
Thhalv10027473m.g Eutrema salsugineum HOM05D002831 ORTHO05D004341 1.1e-22 110.9 191 42.4
MSTRG.27090 Avicennia marina HOM05D002831 ORTHO05D004341 1.4e-22 110.5 194 47.4
AT5G52550 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 1.8e-22 110.2 184 41.3
BNapus_Darmor_BZH_scaffold_232p00070 Brassica napus HOM05D002831 ORTHO05D004341 2.4e-22 109.8 178 43.8
CAN.G204.16 Capsicum annuum HOM05D002831 ORTHO05D004341 2.4e-22 109.8 181 49.7
unitig_37.g11969 Utricularia gibba HOM05D002831 ORTHO05D004341 2.4e-22 109.8 186 44.1
Migut.F00296 Erythranthe guttata HOM05D002831 ORTHO05D004341 3.1e-22 109.4 190 47.9
AL8G27020 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 1.2e-21 107.5 186 41.4
Carub.0008s1268 Capsella rubella HOM05D002831 ORTHO05D004341 1.2e-21 107.5 178 41.6
Sp7g23710 Schrenkiella parvula HOM05D002831 ORTHO05D004341 2.0e-21 106.7 191 42.4
SGA_v2.0_scaffold113G31691 Striga asiatica HOM05D002831 ORTHO05D008967 2.0e-21 106.7 184 46.2
Ah.13g069150 Amaranthus hybridus HOM05D002831 ORTHO05D004341 7.7e-21 104.8 193 38.9
Nitab4.5_0000248g0010 Nicotiana tabacum HOM05D002831 ORTHO05D004341 1.0e-20 104.4 176 46.0
Carub.0007s1530 Capsella rubella HOM05D002831 ORTHO05D004341 1.7e-20 103.6 192 41.1
AL7G27410 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 2.9e-20 102.8 191 39.3
AT4G25670 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 5.0e-20 102.1 192 40.1
BraA01t01645Z Brassica rapa HOM05D002831 ORTHO05D004341 5.0e-20 102.1 189 41.8
AT4G25690 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 8.5e-20 101.3 201 39.8
BolC1t02049H Brassica oleracea HOM05D002831 ORTHO05D004341 8.5e-20 101.3 206 44.2
CsaV3_3G017430 Cucumis sativus L. HOM05D002831 ORTHO05D004341 1.1e-19 100.9 198 50.0
Aa31LG3G8920 Aethionema arabicum HOM05D002831 ORTHO05D004341 1.5e-19 100.5 182 38.5
MELO3C006940.2 Cucumis melo HOM05D002831 ORTHO05D004341 1.5e-19 100.5 199 50.8
AL7G27390 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 3.2e-19 99.4 201 38.8
A01p16930 Brassica napus HOM05D002831 ORTHO05D004341 3.2e-19 99.4 173 41.6
BcaNung07307 Brassica carinata HOM05D002831 ORTHO05D004341 4.2e-19 99.0 189 41.8
BolC1t02046H Brassica oleracea HOM05D002831 ORTHO05D004341 4.2e-19 99.0 194 40.2
ClCG05G008340 Citrullus lanatus HOM05D002831 ORTHO05D004341 4.2e-19 99.0 198 49.5
ATR0661G020 Amborella trichopoda HOM05D002831 ORTHO05D004341 7.2e-19 98.2 149 47.0
MSTRG.74 Avicennia marina HOM05D002831 ORTHO05D004341 9.4e-19 97.8 195 42.1
BraA01t01648Z Brassica rapa HOM05D002831 ORTHO05D004341 1.2e-18 97.4 195 39.5
MSTRG.8713 Avicennia marina HOM05D002831 ORTHO05D004341 2.7e-18 96.3 198 47.5
C01p21210 Brassica napus HOM05D002831 ORTHO05D004341 2.7e-18 96.3 177 41.2
BcaB05g21966 Brassica carinata HOM05D002831 ORTHO05D004341 4.7e-18 95.5 171 45.0
Thhalv10026278m.g Eutrema salsugineum HOM05D002831 ORTHO05D004341 6.1e-18 95.1 179 38.5
SGA_v2.0_scaffold60G21104 Striga asiatica HOM05D002831 ORTHO05D004341 6.1e-18 95.1 196 43.4
HPP92_022210 Vanilla planifolia HOM05D002831 ORTHO05D004341 1.4e-17 94.0 177 41.2
Sp7g23730 Schrenkiella parvula HOM05D002831 ORTHO05D004341 1.8e-17 93.6 179 41.9
Sed0011382 Sechium edule HOM05D002831 ORTHO05D004341 1.8e-17 93.6 200 48.0
vmacro09817 Vaccinium macrocarpon HOM05D002831 ORTHO05D004341 1.8e-17 93.6 110 63.6
CARHR233150 Cardamine hirsuta HOM05D002831 ORTHO05D004341 2.3e-17 93.2 192 39.6
unitig_0.g2470 Utricularia gibba HOM05D002831 ORTHO05D004341 3.0e-17 92.8 187 39.6
BcaC06g32789 Brassica carinata HOM05D002831 ORTHO05D004341 4.0e-17 92.4 195 39.5
HPP92_008924 Vanilla planifolia HOM05D002831 ORTHO05D004341 4.0e-17 92.4 175 42.3
MBI11_g04751_MAGBIO Magnolia biondii HOM05D002831 ORTHO05D004341 8.8e-17 91.3 179 55.9
HPP92_022228 Vanilla planifolia HOM05D002831 ORTHO05D004341 1.2e-16 90.9 177 41.2
BcaC03g14518 Brassica carinata HOM05D002831 ORTHO05D004341 1.5e-16 90.5 128 45.3
FAN10G0429 Fragaria x ananassa HOM05D002831 ORTHO05D004341 2.6e-16 89.7 209 45.9
Migut.F01087 Erythranthe guttata HOM05D002831 ORTHO05D004341 4.4e-16 89.0 176 42.6
Os02g0104200 Oryza sativa ssp. japonica HOM05D002831 ORTHO05D004341 2.2e-15 86.7 202 44.6
Sed0001656 Sechium edule HOM05D002831 ORTHO05D004341 2.8e-15 86.3 199 47.2
ECA232G1618 Erigeron canadensis HOM05D002831 ORTHO05D004341 8.2e-15 84.7 204 49.5
HPP92_022231 Vanilla planifolia HOM05D002831 ORTHO05D004341 1.4e-14 84.0 101 52.5
SGA_v2.0_scaffold10G05296 Striga asiatica HOM05D002831 ORTHO05D004341 1.6e-13 80.5 186 39.2
Zm00001eb229390 Zea mays HOM05D002831 ORTHO05D004341 4.5e-13 79.0 196 46.9
BraA03t14689Z Brassica rapa HOM05D000048 ORTHO05D000445 6.5e-12 75.1 98 60.2
C07p54490 Brassica napus HOM05D000048 ORTHO05D000445 1.9e-11 73.6 101 51.5
BolC7t45934H Brassica oleracea HOM05D000048 ORTHO05D000445 1.9e-11 73.6 101 51.5
Os06g0106900 Oryza sativa ssp. japonica HOM05D002831 ORTHO05D004341 5.5e-11 72.0 173 48.0
HanXRQChr14g0462531 Helianthus annuus HOM05D002831 ORTHO05D004341 1.6e-10 70.5 198 48.5
SEGI_15574 Sequoiadendron giganteum HOM05D002831 ORTHO05D004341 2.7e-10 69.7 83 67.5
Lsat_1_v5_gn_2_131301 Lactuca sativa HOM05D002831 ORTHO05D004341 1.4e-09 67.4 184 47.8
CARHR265540 Cardamine hirsuta HOM05D002831 ORTHO05D004341 3.0e-09 66.2 86 48.8
Sabra06G0007800 Salix brachista HOM05D002831 ORTHO05D010484 2.8e-07 59.7 125 32.8
Lsat_1_v5_gn_9_56481 Lactuca sativa HOM05D002831 ORTHO05D004341 6.3e-07 58.5 77 81.8
Carub.0007s1527 Capsella rubella HOM05D002831 ORTHO05D004341 9.1e-06 54.7 77 50.6


User provided reference genes

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