Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0008768 Lotus japonicus HOM05D003701 ORTHO05D004771 9.4e-248 859.8 437 100.0
Ca_10573_v3 Cicer arietinum L. HOM05D003701 ORTHO05D004771 3.4e-213 745.0 437 86.0
Ca_29596_v3 Cicer arietinum L. HOM05D003701 ORTHO05D004771 3.4e-213 745.0 437 86.0
arahy.Tifrunner.gnm1.ann1.V7IKH4 Arachis hypogaea HOM05D003701 ORTHO05D004771 4.8e-212 741.1 437 85.4
TPR.G1904 Trifolium pratense HOM05D003701 ORTHO05D004771 1.8e-211 739.2 429 86.2
arahy.Tifrunner.gnm1.ann1.X76XU5 Arachis hypogaea HOM05D003701 ORTHO05D004771 2.4e-211 738.8 437 85.6
Glyma.20G179500 Glycine max HOM05D003701 ORTHO05D004771 1.6e-210 736.1 437 84.9
Medtr1g095250 Medicago truncatula HOM05D003701 ORTHO05D004771 2.7e-210 735.3 437 86.0
VMungo0720G1162 Vigna mungo HOM05D003701 ORTHO05D004771 4.5e-210 734.6 441 85.0
Glyma.10G211400 Glycine max HOM05D003701 ORTHO05D004771 1.9e-208 729.2 438 84.7
Phvul.007G094200 Phaseolus vulgaris HOM05D003701 ORTHO05D004771 1.0e-206 723.4 441 83.4
Lalb_Chr06g0162271 Lupinus albus HOM05D003701 ORTHO05D004771 5.2e-206 721.1 441 84.4
Lalb_Chr02g0142141 Lupinus albus HOM05D003701 ORTHO05D004771 1.6e-202 709.5 433 82.4
arahy.Tifrunner.gnm1.ann1.6FL4NC Arachis hypogaea HOM05D003701 ORTHO05D004771 1.7e-201 706.1 437 81.0
Manes.10G045200 Manihot esculenta HOM05D003701 ORTHO05D004771 6.6e-201 704.1 423 83.7
Thecc.10G072600 Theobroma cacao HOM05D003701 ORTHO05D004771 8.6e-201 703.7 426 82.2
Ciclev10031547m.g Citrus clementina HOM05D003701 ORTHO05D004771 1.1e-200 703.4 439 80.9
Gohir.A10G206500 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.1e-200 703.4 423 82.5
CiPaw.02G174300 Carya illinoinensis HOM05D003701 ORTHO05D004771 3.3e-200 701.8 429 82.8
Atru.chr12.740 Acer truncatum HOM05D003701 ORTHO05D004771 4.3e-200 701.4 426 82.6
Gohir.D10G214600 Gossypium hirsutum HOM05D003701 ORTHO05D004771 7.3e-200 700.7 423 82.3
Gohir.D05G297000 Gossypium hirsutum HOM05D003701 ORTHO05D004771 6.1e-199 697.6 426 81.7
Gorai.009G314200 Gossypium raimondii HOM05D003701 ORTHO05D004771 6.1e-199 697.6 426 81.7
Duzib106G0278 Durio zibethinus HOM05D003701 ORTHO05D004771 1.8e-198 696.0 426 81.2
Gohir.A05G297100 Gossypium hirsutum HOM05D003701 ORTHO05D004771 5.2e-198 694.5 426 81.2
Potri.010G221600 Populus trichocarpa HOM05D003701 ORTHO05D004771 2.0e-197 692.6 424 82.3
Gorai.011G240200 Gossypium raimondii HOM05D003701 ORTHO05D004771 1.4e-195 686.4 400 84.5
THA.LOC104827296 Tarenaya hassleriana HOM05D003701 ORTHO05D004771 5.4e-195 684.5 428 79.9
TAR633G1876 Trochodendron aralioides HOM05D003701 ORTHO05D004771 7.0e-195 684.1 428 80.8
Potri.008G040700 Populus trichocarpa HOM05D003701 ORTHO05D004771 2.0e-194 682.6 426 81.5
CANSAT56G3258 Cannabis sativa HOM05D003701 ORTHO05D004771 2.7e-194 682.2 441 78.7
QL08p056106 Quercus lobata HOM05D003701 ORTHO05D004771 1.0e-193 680.2 424 81.8
GSVIVG01016288001 Vitis vinifera HOM05D003701 ORTHO05D004771 1.3e-193 679.9 423 80.9
FAN03G0046 Fragaria x ananassa HOM05D003701 ORTHO05D004771 3.9e-193 678.3 432 79.4
TWI74G0111 Tripterygium wilfordii HOM05D003701 ORTHO05D004771 5.0e-193 677.9 425 79.8
TWI74G0263 Tripterygium wilfordii HOM05D003701 ORTHO05D004771 5.0e-193 677.9 425 79.8
Sabra08G0027700 Salix brachista HOM05D003701 ORTHO05D004771 6.6e-193 677.6 432 79.9
TAR623G1268 Trochodendron aralioides HOM05D003701 ORTHO05D004771 8.6e-193 677.2 428 79.9
FAN10G2919 Fragaria x ananassa HOM05D003701 ORTHO05D004771 1.1e-192 676.8 429 79.5
Hund12041 Selenicereus undatus HOM05D003701 ORTHO05D004771 2.5e-192 675.6 424 80.2
RcHm_v2.0_Chr1g0363491 Rosa chinensis HOM05D003701 ORTHO05D004771 3.3e-192 675.2 431 80.3
FvH4_7g19670 Fragaria vesca HOM05D003701 ORTHO05D004771 5.6e-192 674.5 431 79.4
MD01G1108900 Malus domestica HOM05D003701 ORTHO05D004771 5.6e-192 674.5 427 80.1
Sc06g0004590 Simmondsia chinensis HOM05D003701 ORTHO05D004771 1.6e-191 672.9 421 79.6
Sc09g0006470 Simmondsia chinensis HOM05D003701 ORTHO05D004771 1.6e-191 672.9 435 77.7
Dinv11780 Davidia involucrata HOM05D003701 ORTHO05D004771 1.1e-190 670.2 429 79.3
Thhalv10011486m.g Eutrema salsugineum HOM05D003701 ORTHO05D004771 1.1e-190 670.2 425 78.4
BcaB02g11304 Brassica carinata HOM05D003701 ORTHO05D004771 1.4e-190 669.8 426 78.2
BcaB04g17381 Brassica carinata HOM05D003701 ORTHO05D004771 1.4e-190 669.8 425 78.4
FAN06G0474 Fragaria x ananassa HOM05D003701 ORTHO05D004771 1.4e-190 669.8 427 79.4
Gorai.011G240100 Gossypium raimondii HOM05D003701 ORTHO05D004771 1.8e-190 669.5 423 78.5
Gohir.A10G206400 Gossypium hirsutum HOM05D003701 ORTHO05D004771 3.1e-190 668.7 423 77.8
Sp1g35740 Schrenkiella parvula HOM05D003701 ORTHO05D004771 3.1e-190 668.7 425 78.4
A08p04400 Brassica napus HOM05D003701 ORTHO05D004771 5.2e-190 667.9 425 78.4
BolC8t47272H Brassica oleracea HOM05D003701 ORTHO05D004771 5.2e-190 667.9 425 78.4
CSS0025729 Camellia sinensis var. sinensis HOM05D003701 ORTHO05D004771 5.2e-190 667.9 425 79.3
AL1G55580 Arabidopsis lyrata HOM05D003701 ORTHO05D004771 6.8e-190 667.5 432 77.8
Eucgr.G02824 Eucalyptus grandis HOM05D003701 ORTHO05D004771 6.8e-190 667.5 425 78.6
Hma1.2p1_1004F.1_g246800 Hydrangea macrophylla HOM05D003701 ORTHO05D004771 6.8e-190 667.5 429 79.3
PGSC0003DMG400024392 Solanum tuberosum HOM05D003701 ORTHO05D004771 6.8e-190 667.5 437 77.3
BcaC07g37102 Brassica carinata HOM05D003701 ORTHO05D004771 8.9e-190 667.2 425 78.4
C08p04710 Brassica napus HOM05D003701 ORTHO05D004771 8.9e-190 667.2 425 78.4
Peaxi162Scf00747g00122 Petunia axillaris HOM05D003701 ORTHO05D004771 8.9e-190 667.2 435 77.7
BraA08t32466Z Brassica rapa HOM05D003701 ORTHO05D004771 1.2e-189 666.8 425 78.1
MELO3C019790.2 Cucumis melo HOM05D003701 ORTHO05D004771 2.6e-189 665.6 429 77.2
AT1G48850 Arabidopsis thaliana HOM05D003701 ORTHO05D004771 4.4e-189 664.8 433 77.4
Cpa.g.sc53.71 Carica papaya HOM05D003701 ORTHO05D004771 5.8e-189 664.5 390 83.3
Aqoxy1G01249 Aquilegia oxysepala HOM05D003701 ORTHO05D004771 7.5e-189 664.1 427 78.0
Sabra10G0171500 Salix brachista HOM05D003701 ORTHO05D004771 7.5e-189 664.1 473 73.4
Sed0016616 Sechium edule HOM05D003701 ORTHO05D004771 7.5e-189 664.1 436 76.6
Solyc04g049350.4 Solanum lycopersicum HOM05D003701 ORTHO05D004771 7.5e-189 664.1 437 77.1
Sopen04g019270 Solanum pennellii HOM05D003701 ORTHO05D004771 7.5e-189 664.1 437 77.1
MD07G1175200 Malus domestica HOM05D003701 ORTHO05D004771 9.8e-189 663.7 426 78.2
CsaV3_6G036360 Cucumis sativus L. HOM05D003701 ORTHO05D004771 1.3e-188 663.3 429 76.7
Nitab4.5_0005490g0010 Nicotiana tabacum HOM05D003701 ORTHO05D004771 1.3e-188 663.3 437 76.9
A05p20860 Brassica napus HOM05D003701 ORTHO05D004771 1.7e-188 662.9 425 77.9
BraA05t20991Z Brassica rapa HOM05D003701 ORTHO05D004771 1.7e-188 662.9 425 77.9
BcaC05g27549 Brassica carinata HOM05D003701 ORTHO05D004771 2.2e-188 662.5 424 77.6
C05p35350 Brassica napus HOM05D003701 ORTHO05D004771 2.2e-188 662.5 424 77.6
BolC5t32248H Brassica oleracea HOM05D003701 ORTHO05D004771 2.2e-188 662.5 424 77.6
CARHR038850 Cardamine hirsuta HOM05D003701 ORTHO05D004771 4.9e-188 661.4 432 76.4
ClCG08G007450 Citrullus lanatus HOM05D003701 ORTHO05D004771 4.9e-188 661.4 429 76.7
Carub.0001s3800 Capsella rubella HOM05D003701 ORTHO05D004771 6.4e-188 661.0 425 77.6
MSTRG.8153 Avicennia marina HOM05D003701 ORTHO05D004771 1.4e-187 659.8 431 77.5
Aa31LG10G4830 Aethionema arabicum HOM05D003701 ORTHO05D004771 2.4e-187 659.1 446 75.1
Ah.06g192010 Amaranthus hybridus HOM05D003701 ORTHO05D004771 5.4e-187 657.9 428 76.9
SGA_v2.0_scaffold51G18675 Striga asiatica HOM05D003701 ORTHO05D004771 5.4e-187 657.9 382 84.3
DCAR_015315 Daucus carota HOM05D003701 ORTHO05D004771 1.6e-186 656.4 438 76.9
Lsat_1_v5_gn_2_114381 Lactuca sativa HOM05D003701 ORTHO05D004771 3.5e-186 655.2 438 76.5
MSTRG.367 Avicennia marina HOM05D003701 ORTHO05D004771 6.0e-186 654.4 426 76.8
FAN01G1080 Fragaria x ananassa HOM05D003701 ORTHO05D004771 1.0e-185 653.7 468 73.1
Nn2g13085 Nelumbo nucifera HOM05D003701 ORTHO05D004771 3.0e-185 652.1 432 75.5
PSO339G3023 Papaver somniferum HOM05D003701 ORTHO05D004771 8.6e-185 650.6 426 77.0
AUR62041045 Chenopodium quinoa HOM05D003701 ORTHO05D004771 1.5e-184 649.8 423 78.0
Migut.F01774 Erythranthe guttata HOM05D003701 ORTHO05D004771 2.5e-184 649.0 424 76.4
CAN.G186.45 Capsicum annuum HOM05D003701 ORTHO05D004771 3.3e-184 648.7 434 76.3
PSO063G5795 Papaver somniferum HOM05D003701 ORTHO05D004771 3.3e-184 648.7 426 76.8
HanXRQChr15g0496661 Helianthus annuus HOM05D003701 ORTHO05D004771 4.3e-184 648.3 427 76.8
HanXRQChr09g0249701 Helianthus annuus HOM05D003701 ORTHO05D004771 7.3e-184 647.5 426 76.8
AUR62037661 Chenopodium quinoa HOM05D003701 ORTHO05D004771 2.8e-183 645.6 443 74.7
ECA232G2521 Erigeron canadensis HOM05D003701 ORTHO05D004771 2.8e-183 645.6 428 77.1
MBI02_g43493_MAGBIO Magnolia biondii HOM05D003701 ORTHO05D004771 3.6e-183 645.2 433 76.2
PGR142G1908 Punica granatum HOM05D003701 ORTHO05D004771 3.6e-183 645.2 427 75.6
PGSC0003DMG400016016 Solanum tuberosum HOM05D003701 ORTHO05D004771 3.6e-183 645.2 424 77.1
MBI10_g04889_MAGBIO Magnolia biondii HOM05D003701 ORTHO05D004771 4.7e-183 644.8 431 75.9
Nitab4.5_0001029g0070 Nicotiana tabacum HOM05D003701 ORTHO05D004771 4.7e-183 644.8 465 72.0
ATR0115G006 Amborella trichopoda HOM05D003701 ORTHO05D004771 6.2e-183 644.4 436 76.4
FAN10G2344 Fragaria x ananassa HOM05D003701 ORTHO05D004771 6.2e-183 644.4 429 76.9
Actinidia38848 Actinidia chinensis HOM05D003701 ORTHO05D004771 1.4e-182 643.3 424 77.1
Solyc04g009620.4 Solanum lycopersicum HOM05D003701 ORTHO05D004771 6.8e-182 641.0 422 76.5
Sopen04g004770 Solanum pennellii HOM05D003701 ORTHO05D004771 1.2e-181 640.2 422 76.1
EL10Ac2g03249 Beta vulgaris HOM05D003701 ORTHO05D004771 7.5e-181 637.5 427 76.3
CDE04G2332 Ceratophyllum demersum HOM05D003701 ORTHO05D004771 6.4e-180 634.4 434 74.9
Actinidia03057 Actinidia chinensis HOM05D003701 ORTHO05D004771 1.9e-179 632.9 423 74.7
Duzib114G1041 Durio zibethinus HOM05D003701 ORTHO05D004771 4.1e-179 631.7 430 75.3
Lj1A914T43 Lonicera japonica HOM05D003701 ORTHO05D004771 1.0e-177 627.1 426 76.1
unitig_899.g14441 Utricularia gibba HOM05D003701 ORTHO05D004771 3.0e-177 625.5 425 76.0
Rhsim09G0152400 Rhododendron simsii HOM05D003701 ORTHO05D004771 5.1e-177 624.8 514 65.2
Psat6g184400 Pisum sativum HOM05D003701 ORTHO05D004771 2.5e-176 622.5 359 86.9
Migut.F01773 Erythranthe guttata HOM05D003701 ORTHO05D004771 3.6e-175 618.6 394 77.2
vmacro04876 Vaccinium macrocarpon HOM05D003701 ORTHO05D004771 3.6e-175 618.6 542 61.6
Gohir.D05G297025 Gossypium hirsutum HOM05D003701 ORTHO05D004771 8.1e-175 617.5 424 74.8
arahy.Tifrunner.gnm1.ann1.914CGH Arachis hypogaea HOM05D003701 ORTHO05D004771 1.8e-174 616.3 349 86.8
SEGI_31492 Sequoiadendron giganteum HOM05D003701 ORTHO05D004771 2.4e-174 615.9 422 74.2
DCAR_012659 Daucus carota HOM05D003701 ORTHO05D004771 1.2e-173 613.6 395 77.0
SalBow4G1339 Salvia bowleyana HOM05D003701 ORTHO05D004771 1.2e-173 613.6 423 73.5
HPP92_012666 Vanilla planifolia HOM05D003701 ORTHO05D004771 1.5e-173 613.2 440 71.4
Os03g0254800 Oryza sativa ssp. japonica HOM05D003701 ORTHO05D004771 1.7e-172 609.8 407 74.2
CSS0011231 Camellia sinensis var. sinensis HOM05D003701 ORTHO05D004771 3.8e-172 608.6 425 73.6
GSVIVG01025176001 Vitis vinifera HOM05D003701 ORTHO05D004771 1.2e-170 603.6 424 69.8
CAN.G186.44 Capsicum annuum HOM05D003701 ORTHO05D004771 4.3e-168 595.1 394 72.3
Mapoly0007s0052 Marchantia polymorpha HOM05D003701 ORTHO05D004771 5.6e-168 594.7 380 77.1
AagrBONN_evm.TU.Sc2ySwM_369.393 Anthoceros agrestis HOM05D003701 ORTHO05D004771 1.8e-166 589.7 392 75.5
SMO146G0105 Selaginella moellendorffii HOM05D003701 ORTHO05D004771 4.0e-166 588.6 390 74.4
CiPaw.01G273500 Carya illinoinensis HOM05D003701 ORTHO05D004771 2.3e-161 572.8 337 84.9
Prupe.2G214400 Prunus persica HOM05D003701 ORTHO05D004771 1.3e-159 567.0 361 79.5
CANSAT78G2428 Cannabis sativa HOM05D003701 ORTHO05D004771 9.0e-158 560.8 386 71.8
Oeu007390.4 Olea europaea HOM05D003701 ORTHO05D004771 7.9e-154 547.7 333 82.3
Oeu027479.1 Olea europaea HOM05D003701 ORTHO05D004771 3.0e-153 545.8 343 79.9
Dinv31329 Davidia involucrata HOM05D003701 ORTHO05D004771 8.4e-148 527.7 336 79.5
Zm00001eb011020 Zea mays HOM05D003701 ORTHO05D004771 6.0e-146 521.5 335 76.1
unitig_736.g22517 Utricularia gibba HOM05D003701 ORTHO05D004771 3.3e-144 515.8 420 66.2
MCO05G587 Micromonas commoda HOM05D003701 ORTHO05D004771 8.2e-143 511.1 370 67.8
Cre03.g145747 Chlamydomonas reinhardtii HOM05D003701 ORTHO05D004771 1.8e-142 510.0 371 68.5
Eucgr.J01090 Eucalyptus grandis HOM05D003701 ORTHO05D004771 4.0e-142 508.8 344 74.7
CDE07G1562 Ceratophyllum demersum HOM05D003701 ORTHO05D004771 9.3e-139 497.7 434 62.0
PRCOL_00001179 Prasinoderma coloniale HOM05D003701 ORTHO05D004771 1.1e-136 490.7 371 67.7
COL.COLO4_23690 Corchorus olitorius HOM05D003701 ORTHO05D004771 2.2e-132 476.5 261 87.4
Zm00001eb398410 Zea mays HOM05D003701 ORTHO05D004771 4.2e-123 445.7 338 66.0
COL.COLO4_23691 Corchorus olitorius HOM05D003701 ORTHO05D004771 4.8e-119 432.2 258 82.9
Pp3c1_35940 Physcomitrium patens HOM05D003701 ORTHO05D004771 3.5e-117 426.0 267 77.5
CBR_g41627 Chara braunii HOM05D003701 ORTHO05D004771 2.3e-113 413.3 382 58.6
Haze_16899 Corylus avellana HOM05D003701 ORTHO05D004771 2.6e-104 383.3 230 83.0
Gohir.D10G214532 Gossypium hirsutum HOM05D003701 ORTHO05D004771 3.7e-95 352.8 237 74.3
Cc09_g02030 Coffea canephora HOM05D003701 ORTHO05D004771 4.6e-85 319.3 231 71.9
Cc09_g02040 Coffea canephora HOM05D003701 ORTHO05D004771 4.6e-85 319.3 181 86.7
Gohir.D10G214466 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.1e-83 314.7 182 84.1
Haze_27259 Corylus avellana HOM05D003701 ORTHO05D004771 2.3e-81 307.0 365 44.9
Cfa022484 Carpinus fangiana HOM05D003701 ORTHO05D004771 2.6e-80 303.5 355 49.6
SHI12194 Sapria himalayana HOM05D003666 ORTHO05D004770 1.5e-67 261.2 154 80.5
RcHm_v2.0_Chr4g0427911 Rosa chinensis HOM05D003701 ORTHO05D004771 2.0e-64 250.8 221 63.3
TAR636G0034 Trochodendron aralioides HOM05D003701 ORTHO05D004771 6.0e-61 239.2 187 62.6
TAR636G0416 Trochodendron aralioides HOM05D003701 ORTHO05D004771 6.0e-61 239.2 187 62.6
MSTRG.366 Avicennia marina HOM05D003701 ORTHO05D004771 1.3e-60 238.0 146 78.8
FAN12G0728 Fragaria x ananassa HOM05D003701 ORTHO05D004771 1.7e-55 221.1 244 54.9
MD01G1109200 Malus domestica HOM05D003701 ORTHO05D004771 3.9e-44 183.3 150 65.3
Glyma.14G185633 Glycine max HOM05D003701 ORTHO05D004771 4.3e-43 179.9 99 88.9
SMO173G0015 Selaginella moellendorffii HOM05D003701 ORTHO05D004771 6.2e-34 149.4 220 47.7
FAN17G1952 Fragaria x ananassa HOM05D003701 ORTHO05D004771 1.1e-27 128.6 296 37.8
QL07p006097 Quercus lobata HOM05D003701 ORTHO05D030296 1.1e-27 128.6 82 78.0
VMungo0647G0194 Vigna mungo HOM05D003701 ORTHO05D432816 7.6e-24 115.9 89 70.8
Oeu052763.1 Olea europaea HOM05D003701 ORTHO05D030296 3.5e-21 107.1 60 86.7
FAN12G0587 Fragaria x ananassa HOM05D003701 ORTHO05D004771 3.3e-19 100.5 90 57.8
QL07p006183 Quercus lobata HOM05D003701 ORTHO05D030296 2.8e-18 97.4 59 81.4
QL09p045974 Quercus lobata HOM05D003701 ORTHO05D030296 2.8e-18 97.4 59 81.4
FAN01G1877 Fragaria x ananassa HOM05D003701 ORTHO05D208017 5.3e-17 93.2 106 56.6
Medtr0368s0020 Medicago truncatula HOM05D003701 ORTHO05D026922 9.0e-17 92.4 45 93.3
Glyma.14G185666 Glycine max HOM05D003701 ORTHO05D026922 4.5e-16 90.1 48 89.6
Oeu043945.1 Olea europaea HOM05D003701 ORTHO05D004771 2.7e-13 80.9 46 78.3
C02p38530 Brassica napus HOM05D003701 ORTHO05D101262 1.3e-07 62.0 74 47.3
CBR_g74262 Chara braunii HOM05D003701 ORTHO05D004771 1.3e-07 62.0 43 72.1
BolC2t09870H Brassica oleracea HOM05D003701 ORTHO05D041413 2.2e-07 61.2 74 48.6
C05p40290 Brassica napus HOM05D003701 ORTHO05D041413 1.4e-06 58.5 74 48.6
Rhsim05G0028600 Rhododendron simsii HOM05D000745 ORTHO05D000641 5.5e-06 56.6 28 82.1


User provided reference genes

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