Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0008525 Lotus japonicus HOM05D005760 ORTHO05D007113 0.0e+00 2882.4 1457 100.0
Glyma.02G158100 Glycine max HOM05D005760 ORTHO05D007113 0.0e+00 2348.9 1458 82.5
Ca_11749_v3 Cicer arietinum L. HOM05D005760 ORTHO05D007113 0.0e+00 2346.2 1464 82.0
Phvul.007G245600 Phaseolus vulgaris HOM05D005760 ORTHO05D007113 0.0e+00 2301.2 1469 81.3
TPR.G22709 Trifolium pratense HOM05D005760 ORTHO05D007113 0.0e+00 2274.2 1528 77.6
Psat6g094080 Pisum sativum HOM05D005760 ORTHO05D007113 0.0e+00 2266.9 1456 80.6
Medtr1g050670 Medicago truncatula HOM05D005760 ORTHO05D007113 0.0e+00 2224.1 1467 78.9
arahy.Tifrunner.gnm1.ann1.H1JXTH Arachis hypogaea HOM05D005760 ORTHO05D007113 0.0e+00 2191.0 1504 75.5
arahy.Tifrunner.gnm1.ann1.BNJ0D6 Arachis hypogaea HOM05D005760 ORTHO05D007113 0.0e+00 2190.6 1504 75.4
VMungo0720G1167 Vigna mungo HOM05D005760 ORTHO05D007113 0.0e+00 1955.6 1262 80.1
Cfa013846 Carpinus fangiana HOM05D005760 ORTHO05D007113 0.0e+00 1869.4 1459 67.9
Haze_22520 Corylus avellana HOM05D005760 ORTHO05D007113 0.0e+00 1867.0 1485 66.9
QL02p033685 Quercus lobata HOM05D005760 ORTHO05D007113 0.0e+00 1826.6 1462 67.2
Thecc.08G184000 Theobroma cacao HOM05D005760 ORTHO05D007113 0.0e+00 1824.7 1468 65.9
CiPaw.08G058900 Carya illinoinensis HOM05D005760 ORTHO05D007113 0.0e+00 1807.0 1462 65.4
Prupe.8G057200 Prunus persica HOM05D005760 ORTHO05D007113 0.0e+00 1805.4 1467 65.7
Dinv41715 Davidia involucrata HOM05D005760 ORTHO05D007113 0.0e+00 1797.3 1487 65.0
Ciclev10000028m.g Citrus clementina HOM05D005760 ORTHO05D007113 0.0e+00 1795.4 1471 65.1
Manes.18G101200 Manihot esculenta HOM05D005760 ORTHO05D007113 0.0e+00 1788.1 1470 64.6
Atru.chr13.1758 Acer truncatum HOM05D005760 ORTHO05D007113 0.0e+00 1782.3 1465 64.8
COL.COLO4_04233 Corchorus olitorius HOM05D005760 ORTHO05D007113 0.0e+00 1779.6 1461 64.8
MD10G1047900 Malus domestica HOM05D005760 ORTHO05D007113 0.0e+00 1764.6 1459 64.3
Gohir.D05G253200 Gossypium hirsutum HOM05D005760 ORTHO05D007113 0.0e+00 1762.7 1470 64.5
Gorai.009G263800 Gossypium raimondii HOM05D005760 ORTHO05D007113 0.0e+00 1758.4 1470 64.4
Sabra19G0094600 Salix brachista HOM05D005760 ORTHO05D007113 0.0e+00 1756.9 1464 64.5
MD05G1041500 Malus domestica HOM05D005760 ORTHO05D007113 0.0e+00 1748.0 1459 64.6
TWI34G1956 Tripterygium wilfordii HOM05D005760 ORTHO05D007113 0.0e+00 1710.3 1471 62.1
Actinidia23335 Actinidia chinensis HOM05D005760 ORTHO05D007113 0.0e+00 1704.9 1485 61.8
TAR628G1581 Trochodendron aralioides HOM05D005760 ORTHO05D007113 0.0e+00 1696.8 1490 61.9
CANSAT78G0610 Cannabis sativa HOM05D005760 ORTHO05D007113 0.0e+00 1694.5 1462 61.4
ClCG11G008140 Citrullus lanatus HOM05D005760 ORTHO05D007113 0.0e+00 1672.5 1474 60.9
RcHm_v2.0_Chr6g0272031 Rosa chinensis HOM05D005760 ORTHO05D007113 0.0e+00 1666.4 1469 62.3
CsaV3_2G033490 Cucumis sativus L. HOM05D005760 ORTHO05D007113 0.0e+00 1664.8 1476 60.2
Nn1g08372 Nelumbo nucifera HOM05D005760 ORTHO05D007113 0.0e+00 1663.7 1482 60.3
Duzib116G0663 Durio zibethinus HOM05D005760 ORTHO05D007113 0.0e+00 1662.9 1463 61.0
PGR102G0553 Punica granatum HOM05D005760 ORTHO05D007113 0.0e+00 1662.5 1477 61.3
GSVIVG01034473001 Vitis vinifera HOM05D005760 ORTHO05D007113 0.0e+00 1636.7 1457 61.4
Rhsim06G0094000 Rhododendron simsii HOM05D005760 ORTHO05D007113 0.0e+00 1615.1 1474 59.7
Hma1.2p1_0004F.1_g004045 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 0.0e+00 1590.9 1522 58.9
MSTRG.25441 Avicennia marina HOM05D005760 ORTHO05D007113 0.0e+00 1577.8 1482 58.6
SalBow7G4130 Salvia bowleyana HOM05D005760 ORTHO05D007113 0.0e+00 1545.8 1490 56.9
FAN15G1969 Fragaria x ananassa HOM05D005760 ORTHO05D007113 0.0e+00 1534.2 1475 59.2
FvH4_2g11773 Fragaria vesca HOM05D005760 ORTHO05D007113 0.0e+00 1533.9 1472 59.0
CAN.G199.9 Capsicum annuum HOM05D005760 ORTHO05D007113 0.0e+00 1530.0 1461 57.2
Hund27088 Selenicereus undatus HOM05D005760 ORTHO05D007113 0.0e+00 1527.3 1488 56.9
Aqoxy6G00127 Aquilegia oxysepala HOM05D005760 ORTHO05D007113 0.0e+00 1523.8 1489 56.4
Migut.C01256 Erythranthe guttata HOM05D005760 ORTHO05D007113 0.0e+00 1523.8 1468 56.8
FAN24G1577 Fragaria x ananassa HOM05D005760 ORTHO05D007113 0.0e+00 1519.6 1497 58.0
THA.LOC104806788 Tarenaya hassleriana HOM05D005760 ORTHO05D007113 0.0e+00 1515.0 1443 57.4
EL10Ac1g00088 Beta vulgaris HOM05D005760 ORTHO05D007113 0.0e+00 1510.4 1472 56.3
MELO3C008121.2 Cucumis melo HOM05D005760 ORTHO05D007113 0.0e+00 1508.8 1488 55.8
Sc23g0001270 Simmondsia chinensis HOM05D005760 ORTHO05D007113 0.0e+00 1506.5 1469 57.5
Sopen06g023840 Solanum pennellii HOM05D005760 ORTHO05D007113 0.0e+00 1506.1 1465 57.6
DCAR_001048 Daucus carota HOM05D005760 ORTHO05D007113 0.0e+00 1502.3 1480 56.8
Lj4C503G3 Lonicera japonica HOM05D005760 ORTHO05D007113 0.0e+00 1500.3 1367 60.6
Nitab4.5_0000303g0150 Nicotiana tabacum HOM05D005760 ORTHO05D007113 0.0e+00 1495.3 1488 56.2
Potri.019G083100 Populus trichocarpa HOM05D005760 ORTHO05D007113 0.0e+00 1483.8 1271 62.9
PSO170G3854 Papaver somniferum HOM05D005760 ORTHO05D007113 0.0e+00 1481.1 1500 55.9
vmacro12489 Vaccinium macrocarpon HOM05D005760 ORTHO05D007113 0.0e+00 1480.7 1535 55.1
Cc10_g10700 Coffea canephora HOM05D005760 ORTHO05D007113 0.0e+00 1473.4 1382 57.8
AUR62004640 Chenopodium quinoa HOM05D005760 ORTHO05D007113 0.0e+00 1470.7 1484 54.9
CSS0014231 Camellia sinensis var. sinensis HOM05D005760 ORTHO05D007113 0.0e+00 1469.1 1266 62.6
PSO782G3241 Papaver somniferum HOM05D005760 ORTHO05D007113 0.0e+00 1461.4 1501 55.6
Aa31LG6G8840 Aethionema arabicum HOM05D005760 ORTHO05D007113 0.0e+00 1438.7 1473 55.1
Thhalv10001809m.g Eutrema salsugineum HOM05D005760 ORTHO05D007113 0.0e+00 1438.7 1459 54.8
Sp1g30370 Schrenkiella parvula HOM05D005760 ORTHO05D007113 0.0e+00 1435.2 1471 54.7
SGA_v2.0_scaffold118G32485 Striga asiatica HOM05D005760 ORTHO05D007113 0.0e+00 1422.5 1423 55.0
Lalb_Chr03g0036151 Lupinus albus HOM05D005760 ORTHO05D007113 0.0e+00 1421.0 1043 72.7
AL1G50540 Arabidopsis lyrata HOM05D005760 ORTHO05D007113 0.0e+00 1416.0 1470 54.6
Lsat_1_v5_gn_1_10440 Lactuca sativa HOM05D005760 ORTHO05D007113 0.0e+00 1411.7 1458 55.1
Ah.05g178160 Amaranthus hybridus HOM05D005760 ORTHO05D007113 0.0e+00 1409.4 1485 54.3
AUR62022696 Chenopodium quinoa HOM05D005760 ORTHO05D007113 0.0e+00 1407.9 1494 53.7
AT1G35660 Arabidopsis thaliana HOM05D005760 ORTHO05D007113 0.0e+00 1400.6 1470 54.5
CARHR034440 Cardamine hirsuta HOM05D005760 ORTHO05D007113 0.0e+00 1397.5 1463 54.3
Carub.0001s3325 Capsella rubella HOM05D005760 ORTHO05D007113 0.0e+00 1391.3 1467 53.4
BcaB07g33624 Brassica carinata HOM05D005760 ORTHO05D007113 0.0e+00 1367.4 1461 52.8
C06p06840 Brassica napus HOM05D005760 ORTHO05D007113 0.0e+00 1364.4 1462 52.6
BolC6t35790H Brassica oleracea HOM05D005760 ORTHO05D007113 0.0e+00 1362.4 1461 52.6
BcaC08g43328 Brassica carinata HOM05D005760 ORTHO05D007113 0.0e+00 1361.7 1458 52.4
A06p02320 Brassica napus HOM05D005760 ORTHO05D007113 0.0e+00 1357.8 1457 52.5
BraA06t23439Z Brassica rapa HOM05D005760 ORTHO05D007113 0.0e+00 1355.9 1457 52.4
ATR0003G012 Amborella trichopoda HOM05D005760 ORTHO05D007113 0.0e+00 1343.2 1397 53.2
ECA152G0004 Erigeron canadensis HOM05D005760 ORTHO05D007113 0.0e+00 1320.4 1465 53.0
HanXRQChr04g0107521 Helianthus annuus HOM05D005760 ORTHO05D007113 0.0e+00 1314.7 1453 51.6
Os01g0873800 Oryza sativa ssp. japonica HOM05D005760 ORTHO05D007113 0.0e+00 1301.6 1465 50.0
Nitab4.5_0002500g0010 Nicotiana tabacum HOM05D005760 ORTHO05D007113 0.0e+00 1289.6 1307 55.2
Zm00001eb146280 Zea mays HOM05D005760 ORTHO05D007113 0.0e+00 1288.5 1486 49.4
Gohir.A05G250600 Gossypium hirsutum HOM05D005760 ORTHO05D007113 0.0e+00 1243.8 1110 62.1
Hma1.2p1_0004F.1_g004050 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 0.0e+00 1198.7 1086 60.6
Oeu000547.3 Olea europaea HOM05D005760 ORTHO05D007113 0.0e+00 1197.6 1168 56.6
SpUn0216_0010 Schrenkiella parvula HOM05D005760 ORTHO05D007113 0.0e+00 1175.6 1320 52.3
Sed0013995 Sechium edule HOM05D005760 ORTHO05D007113 0.0e+00 1159.4 1111 56.8
SEGI_03904 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 0.0e+00 1142.5 1361 49.2
Solyc06g065360.3 Solanum lycopersicum HOM05D005760 ORTHO05D007113 0.0e+00 1138.6 1141 55.7
Lj4C496G3 Lonicera japonica HOM05D005760 ORTHO05D007113 0.0e+00 1135.9 921 65.0
SHI09011 Sapria himalayana HOM05D005760 ORTHO05D007113 3.9e-298 1028.9 1335 46.8
Pp3c15_6380 Physcomitrium patens HOM05D005760 ORTHO05D007113 1.2e-259 901.0 1538 39.7
Pp3c15_6360 Physcomitrium patens HOM05D005760 ORTHO05D007113 5.7e-257 892.1 1496 40.3
Mapoly0036s0148 Marchantia polymorpha HOM05D005760 ORTHO05D007113 1.0e-253 881.3 1530 39.9
Eucgr.F04123 Eucalyptus grandis HOM05D005760 ORTHO05D007113 4.1e-247 859.4 1014 50.1
Peaxi162Scf00268g01123 Petunia axillaris HOM05D005760 ORTHO05D007113 3.3e-241 839.7 945 51.5
AagrBONN_evm.TU.Sc2ySwM_117.2253 Anthoceros agrestis HOM05D005760 ORTHO05D007113 7.2e-228 795.4 1543 36.4
unitig_0.g276 Utricularia gibba HOM05D005760 ORTHO05D007113 6.8e-210 735.7 857 50.4
Peaxi162Scf00268g01128 Petunia axillaris HOM05D005760 ORTHO05D007113 8.9e-210 735.3 519 72.1
Lalb_Chr03g0036141 Lupinus albus HOM05D005760 ORTHO05D007113 2.0e-198 697.6 429 81.4
CBR_g40969 Chara braunii HOM05D005760 ORTHO05D007113 4.9e-168 596.7 1941 29.8
QL02p033674 Quercus lobata HOM05D005760 ORTHO05D007113 4.6e-166 590.1 659 53.4
CDE08G1571 Ceratophyllum demersum HOM05D005760 ORTHO05D007113 3.0e-157 560.8 880 43.0
Cpa.g.sc66.38 Carica papaya HOM05D005760 ORTHO05D007113 3.2e-143 514.2 582 51.7
unitig_0.g275 Utricularia gibba HOM05D005760 ORTHO05D007113 1.2e-137 495.7 603 48.8
Lj4A496G12 Lonicera japonica HOM05D005760 ORTHO05D007113 1.5e-129 468.8 446 57.8
SEGI_16135 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 5.5e-127 460.3 436 57.8
Carub.0001s0936 Capsella rubella HOM05D005760 ORTHO05D007113 1.3e-112 412.5 1354 28.4
Gohir.A05G250551 Gossypium hirsutum HOM05D005760 ORTHO05D007113 4.6e-89 334.3 227 74.9
BolC6t35788H Brassica oleracea HOM05D005760 ORTHO05D007113 3.0e-80 305.1 345 49.0
Cpa.g.sc66.39 Carica papaya HOM05D005760 ORTHO05D007113 2.1e-78 298.9 399 46.1
C06p06800 Brassica napus HOM05D005760 ORTHO05D007113 2.9e-75 288.5 269 57.6
QL02p033652 Quercus lobata HOM05D005760 ORTHO05D007113 2.1e-70 272.3 586 36.0
CDE08G0174 Ceratophyllum demersum HOM05D003774 ORTHO05D009174 5.6e-63 247.7 261 54.0
AL1G47130 Arabidopsis lyrata HOM05D005760 ORTHO05D007113 2.9e-59 235.3 1153 25.3
FAN02G3326 Fragaria x ananassa HOM05D005760 ORTHO05D007113 3.2e-42 178.7 166 63.9
VMungo0720G0756 Vigna mungo HOM05D005760 ORTHO05D007113 9.6e-39 167.2 103 85.4
Hma1.2p1_0004F.1_g004040 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 2.3e-24 119.4 91 67.0
SHI09012 Sapria himalayana HOM05D005760 ORTHO05D007113 2.3e-24 119.4 94 66.0
Cc10_g10690 Coffea canephora HOM05D005760 ORTHO05D007113 1.5e-23 116.7 102 64.7
ATR1101G015 Amborella trichopoda HOM05D005760 ORTHO05D007113 2.9e-19 102.4 71 64.8
CDE08G0048 Ceratophyllum demersum HOM05D005760 ORTHO05D007113 2.6e-15 89.4 70 62.9
Hma1.2p1_0004F.1_g004060 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 5.7e-15 88.2 103 49.5
Cpa.g.sc66.41 Carica papaya HOM05D005760 ORTHO05D007113 1.7e-14 86.7 85 55.3
HPP92_025156 Vanilla planifolia HOM05D005760 ORTHO05D007113 2.8e-14 85.9 64 59.4
ATR0003G024 Amborella trichopoda HOM05D005760 ORTHO05D007113 1.2e-12 80.5 88 46.6
Cpa.g.sc66.40 Carica papaya HOM05D005760 ORTHO05D007113 3.5e-12 79.0 54 70.4
Lj4C503T2 Lonicera japonica HOM05D005760 ORTHO05D007113 1.4e-08 67.0 103 40.8
SHI09014 Sapria himalayana HOM05D005760 ORTHO05D007113 2.3e-08 66.2 42 71.4
Zm00001eb324780 Zea mays HOM05D005760 ORTHO05D000367 1.3e-06 60.5 55 56.4
SEGI_08751 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 2.2e-06 59.7 67 50.7


User provided reference genes

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