Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0008364 Lotus japonicus HOM05D004643 ORTHO05D005535 1.6e-181 639.4 341 100.0
Phvul.007G061400 Phaseolus vulgaris HOM05D004643 ORTHO05D005535 1.5e-123 446.8 332 74.1
Glyma.20G150000 Glycine max HOM05D004643 ORTHO05D005535 2.1e-122 443.0 343 73.8
VMungo0720G0668 Vigna mungo HOM05D004643 ORTHO05D005535 2.4e-121 439.5 332 72.9
Medtr1g102900 Medicago truncatula HOM05D004643 ORTHO05D005535 3.1e-121 439.1 342 72.5
TPR.G26097 Trifolium pratense HOM05D004643 ORTHO05D005535 5.2e-121 438.3 345 73.0
Ca_10855_v3 Cicer arietinum L. HOM05D004643 ORTHO05D005535 2.0e-120 436.4 338 75.4
Glyma.10G244400 Glycine max HOM05D004643 ORTHO05D005535 2.3e-116 422.9 344 72.4
Psat6g204360 Pisum sativum HOM05D004643 ORTHO05D005535 9.6e-91 337.8 272 72.8
Haze_11230 Corylus avellana HOM05D004643 ORTHO05D005535 6.1e-85 318.5 333 54.4
QL06p001136 Quercus lobata HOM05D004643 ORTHO05D005535 1.1e-81 307.8 353 51.8
Lalb_Chr21g0304771 Lupinus albus HOM05D004643 ORTHO05D005535 5.0e-79 298.9 325 55.7
CiPaw.02G121300 Carya illinoinensis HOM05D004643 ORTHO05D005535 9.4e-78 294.7 331 55.9
Prupe.1G020900 Prunus persica HOM05D004643 ORTHO05D005535 1.4e-76 290.8 333 52.3
Sed0027490 Sechium edule HOM05D004643 ORTHO05D005535 5.3e-73 278.9 337 50.4
Thecc.04G238200 Theobroma cacao HOM05D004643 ORTHO05D005535 4.5e-72 275.8 350 51.7
CsaV3_2G013410 Cucumis sativus L. HOM05D004643 ORTHO05D005535 5.5e-70 268.9 332 50.3
RcHm_v2.0_Chr4g0387691 Rosa chinensis HOM05D004643 ORTHO05D005535 3.6e-69 266.2 351 52.1
CANSAT78G2233 Cannabis sativa HOM05D004643 ORTHO05D005535 5.2e-68 262.3 335 49.9
Duzib151G1159 Durio zibethinus HOM05D004643 ORTHO05D005535 6.7e-68 261.9 341 49.3
Manes.15G032500 Manihot esculenta HOM05D004643 ORTHO05D005535 4.4e-67 259.2 334 49.1
FvH4_4g01120 Fragaria vesca HOM05D004643 ORTHO05D005535 2.2e-66 256.9 351 52.4
MD16G1199200 Malus domestica HOM05D004643 ORTHO05D005535 2.8e-66 256.5 339 49.0
FAN12G4007 Fragaria x ananassa HOM05D004643 ORTHO05D005535 6.3e-66 255.4 351 52.1
MD13G1199500 Malus domestica HOM05D004643 ORTHO05D005535 6.3e-66 255.4 346 48.3
PGR004G2239 Punica granatum HOM05D004643 ORTHO05D005535 4.1e-65 252.7 341 50.4
ClCG06G006490 Citrullus lanatus HOM05D004643 ORTHO05D005535 7.7e-64 248.4 330 48.8
Ciclev10005357m.g Citrus clementina HOM05D004643 ORTHO05D005535 1.2e-61 241.1 351 46.4
Cpa.g.sc44.119 Carica papaya HOM05D004643 ORTHO05D005535 3.0e-60 236.5 305 48.9
AUR62024080 Chenopodium quinoa HOM05D004643 ORTHO05D005535 4.0e-60 236.1 346 45.7
FAN22G0811 Fragaria x ananassa HOM05D002305 ORTHO05D002528 4.0e-60 236.1 350 48.9
AUR62034685 Chenopodium quinoa HOM05D004643 ORTHO05D005535 1.2e-59 234.6 354 44.9
FAN17G1992 Fragaria x ananassa HOM05D002305 ORTHO05D002528 1.5e-59 234.2 350 45.4
Gohir.D10G151600 Gossypium hirsutum HOM05D004643 ORTHO05D005535 3.3e-59 233.0 361 44.0
Nn6g34159 Nelumbo nucifera HOM05D004643 ORTHO05D005535 1.3e-58 231.1 341 47.2
GSVIVG01018038001 Vitis vinifera HOM05D004643 ORTHO05D005535 1.3e-58 231.1 355 45.9
COL.COLO4_21561 Corchorus olitorius HOM05D004643 ORTHO05D005535 7.0e-57 225.3 309 48.2
Gorai.011G168900 Gossypium raimondii HOM05D004643 ORTHO05D005535 7.0e-57 225.3 362 43.1
TWI53G0950 Tripterygium wilfordii HOM05D004643 ORTHO05D005535 9.1e-57 224.9 343 44.6
TAR362G0460 Trochodendron aralioides HOM05D004643 ORTHO05D005535 1.2e-56 224.6 349 45.6
Gohir.A10G113842 Gossypium hirsutum HOM05D004643 ORTHO05D005535 5.9e-56 222.2 364 42.9
Sed0024780 Sechium edule HOM05D004643 ORTHO05D005535 1.3e-55 221.1 261 53.3
Eucgr.H03414 Eucalyptus grandis HOM05D004643 ORTHO05D005535 3.8e-55 219.5 314 44.9
Atru.chr4.2372 Acer truncatum HOM05D004643 ORTHO05D005535 2.1e-53 213.8 329 44.1
MBI11_g22675_MAGBIO Magnolia biondii HOM05D004643 ORTHO05D005535 4.7e-53 212.6 338 42.9
Sp7g12820 Schrenkiella parvula HOM05D004643 ORTHO05D005535 6.1e-53 212.2 351 41.9
Atru.chr4.2396 Acer truncatum HOM05D004643 ORTHO05D005535 1.4e-52 211.1 329 43.8
Potri.002G048500 Populus trichocarpa HOM05D004643 ORTHO05D005535 4.0e-52 209.5 335 45.1
CSS0031620 Camellia sinensis var. sinensis HOM05D004643 ORTHO05D005535 1.5e-51 207.6 336 44.9
Carub.0007s2745 Capsella rubella HOM05D004643 ORTHO05D005535 4.4e-51 206.1 333 42.9
CARHR221190 Cardamine hirsuta HOM05D004643 ORTHO05D005535 5.7e-51 205.7 348 42.2
MELO3C014283.2 Cucumis melo HOM05D004643 ORTHO05D005535 5.7e-51 205.7 332 42.5
AT4G14720 Arabidopsis thaliana HOM05D004643 ORTHO05D005535 1.7e-50 204.1 335 43.0
THA.LOC104803050 Tarenaya hassleriana HOM05D004643 ORTHO05D005535 2.8e-50 203.4 344 43.9
BcaB04g18255 Brassica carinata HOM05D004643 ORTHO05D005535 4.8e-50 202.6 345 43.5
Dinv22507 Davidia involucrata HOM05D004643 ORTHO05D005535 4.8e-50 202.6 338 45.3
Thhalv10025735m.g Eutrema salsugineum HOM05D004643 ORTHO05D005535 4.8e-50 202.6 336 41.7
A01p22960 Brassica napus HOM05D004643 ORTHO05D005535 1.1e-49 201.4 284 46.5
Actinidia19959 Actinidia chinensis HOM05D004643 ORTHO05D005535 1.4e-49 201.1 330 42.7
BraA01t02209Z Brassica rapa HOM05D004643 ORTHO05D005535 1.4e-49 201.1 285 47.0
Manes.03G173500 Manihot esculenta HOM05D004643 ORTHO05D005535 2.4e-49 200.3 263 45.2
Aqoxy5G00405 Aquilegia oxysepala HOM05D004643 ORTHO05D005535 3.1e-49 199.9 341 40.5
Carub.0007s2747 Capsella rubella HOM05D004643 ORTHO05D005535 5.4e-49 199.1 338 44.1
Actinidia09108 Actinidia chinensis HOM05D004643 ORTHO05D005535 7.0e-49 198.7 338 42.0
BcaNung00344 Brassica carinata HOM05D004643 ORTHO05D005535 9.1e-49 198.4 340 41.2
TAR636G3033 Trochodendron aralioides HOM05D004643 ORTHO05D005535 9.1e-49 198.4 354 42.1
Potri.005G214300 Populus trichocarpa HOM05D004643 ORTHO05D005535 1.6e-48 197.6 354 42.9
AL7G41265 Arabidopsis lyrata HOM05D004643 ORTHO05D005535 2.7e-48 196.8 326 42.3
BolC8t48230H Brassica oleracea HOM05D004643 ORTHO05D005535 2.7e-48 196.8 335 42.1
CAN.G380.10 Capsicum annuum HOM05D004643 ORTHO05D005535 2.7e-48 196.8 339 43.4
Hma1.2p1_0172F.1_g075970 Hydrangea macrophylla HOM05D004643 ORTHO05D005535 5.9e-48 195.7 302 44.7
C01p28440 Brassica napus HOM05D004643 ORTHO05D005535 1.0e-47 194.9 336 41.1
THA.LOC104808573 Tarenaya hassleriana HOM05D004643 ORTHO05D005535 2.2e-47 193.7 342 41.8
Atru.chr5.1514 Acer truncatum HOM05D004643 ORTHO05D005535 2.9e-47 193.4 336 42.0
DCAR_002706 Daucus carota HOM05D004643 ORTHO05D005535 3.8e-47 193.0 337 41.5
Aa31LG9G2640 Aethionema arabicum HOM05D004643 ORTHO05D005535 5.0e-47 192.6 347 41.8
BcaC09g50142 Brassica carinata HOM05D004643 ORTHO05D005535 5.0e-47 192.6 335 39.4
BolC1t02783H Brassica oleracea HOM05D004643 ORTHO05D005535 5.0e-47 192.6 334 39.8
Sabra05G0163800 Salix brachista HOM05D004643 ORTHO05D005535 1.1e-46 191.4 357 40.9
Cc01_g19060 Coffea canephora HOM05D004643 ORTHO05D005535 1.5e-46 191.0 314 44.9
PGSC0003DMG401020059 Solanum tuberosum HOM05D004643 ORTHO05D005535 1.9e-46 190.7 327 43.1
PSO170G0554 Papaver somniferum HOM05D004643 ORTHO05D005535 2.5e-46 190.3 315 43.5
Solyc06g084120.4 Solanum lycopersicum HOM05D004643 ORTHO05D005535 2.5e-46 190.3 330 43.3
GSVIVG01003113001 Vitis vinifera HOM05D004643 ORTHO05D005535 2.5e-46 190.3 340 42.4
A08p11380 Brassica napus HOM05D004643 ORTHO05D005535 4.2e-46 189.5 332 41.6
Ciclev10021137m.g Citrus clementina HOM05D004643 ORTHO05D005535 4.2e-46 189.5 332 41.9
CAN.G771.7 Capsicum annuum HOM05D004643 ORTHO05D005535 7.2e-46 188.7 341 43.4
CiPaw.01G195600 Carya illinoinensis HOM05D004643 ORTHO05D005535 1.2e-45 188.0 226 50.9
BraA08t33131Z Brassica rapa HOM05D004643 ORTHO05D005535 1.6e-45 187.6 332 41.3
Nn1g02445 Nelumbo nucifera HOM05D004643 ORTHO05D005535 4.7e-45 186.0 277 47.3
ECA248G3352 Erigeron canadensis HOM05D004643 ORTHO05D005535 1.4e-44 184.5 311 43.1
Lsat_1_v5_gn_5_185821 Lactuca sativa HOM05D004643 ORTHO05D005535 3.0e-44 183.3 301 43.9
BcaC07g37843 Brassica carinata HOM05D004643 ORTHO05D005535 5.2e-44 182.6 361 39.1
HanXRQChr01g0005571 Helianthus annuus HOM05D004643 ORTHO05D005535 1.2e-43 181.4 310 43.5
Nitab4.5_0001044g0010 Nicotiana tabacum HOM05D004643 ORTHO05D005535 1.2e-43 181.4 338 42.9
HanXRQChr11g0338851 Helianthus annuus HOM05D004643 ORTHO05D005535 1.5e-43 181.0 309 43.4
Sopen09g027380 Solanum pennellii HOM05D004643 ORTHO05D005535 1.5e-43 181.0 340 42.1
PSO210G1486 Papaver somniferum HOM05D004643 ORTHO05D005535 2.0e-43 180.6 317 42.3
Solyc09g065630.3 Solanum lycopersicum HOM05D004643 ORTHO05D005535 2.0e-43 180.6 340 41.8
Migut.O00727 Erythranthe guttata HOM05D004643 ORTHO05D005535 3.4e-43 179.9 310 41.9
Sopen06g035500 Solanum pennellii HOM05D004643 ORTHO05D005535 3.4e-43 179.9 256 48.0
PGSC0003DMG400019346 Solanum tuberosum HOM05D004643 ORTHO05D005535 1.7e-42 177.6 345 40.3
AL7G41240 Arabidopsis lyrata HOM05D004643 ORTHO05D005535 2.2e-42 177.2 330 39.4
Gorai.008G002400 Gossypium raimondii HOM05D004643 ORTHO05D005535 3.7e-42 176.4 328 40.9
Migut.N02031 Erythranthe guttata HOM05D004643 ORTHO05D005535 4.9e-42 176.0 311 41.2
Nitab4.5_0015056g0010 Nicotiana tabacum HOM05D004643 ORTHO05D005535 1.4e-41 174.5 312 42.9
Gohir.A12G002900 Gossypium hirsutum HOM05D004643 ORTHO05D005535 1.8e-41 174.1 324 41.0
Thecc.01G272300 Theobroma cacao HOM05D004643 ORTHO05D005535 4.1e-41 172.9 339 43.1
Lsat_1_v5_gn_8_94021 Lactuca sativa HOM05D004643 ORTHO05D005535 5.4e-41 172.6 310 41.9
MSTRG.21530 Avicennia marina HOM05D004643 ORTHO05D005535 7.0e-41 172.2 299 42.1
SalBow4G2540 Salvia bowleyana HOM05D004643 ORTHO05D005535 3.5e-40 169.9 263 43.3
Duzib133G1145 Durio zibethinus HOM05D004643 ORTHO05D005535 4.5e-40 169.5 268 44.0
Gohir.D12G002600 Gossypium hirsutum HOM05D004643 ORTHO05D005535 4.5e-40 169.5 334 41.9
Rhsim13G0028400 Rhododendron simsii HOM05D004643 ORTHO05D005535 5.9e-40 169.1 423 35.2
Duzib138G1309 Durio zibethinus HOM05D004643 ORTHO05D005535 3.8e-39 166.4 327 40.1
EL10Ac3g06512 Beta vulgaris HOM05D004643 ORTHO05D005535 7.3e-38 162.2 204 49.5
Duzib211G0433 Durio zibethinus HOM05D004643 ORTHO05D005535 7.3e-38 162.2 341 40.5
Gorai.004G077100 Gossypium raimondii HOM05D004643 ORTHO05D005535 2.1e-37 160.6 309 40.1
Sabra02G0039600 Salix brachista HOM05D004643 ORTHO05D005535 2.1e-37 160.6 328 39.0
Nitab4.5_0000871g0020 Nicotiana tabacum HOM05D004643 ORTHO05D005535 3.6e-37 159.8 343 38.8
HPP92_023542 Vanilla planifolia HOM05D004643 ORTHO05D005535 1.2e-35 154.8 357 37.3
Dinv32890 Davidia involucrata HOM05D004643 ORTHO05D005535 2.0e-35 154.1 186 50.5
unitig_0.g136 Utricularia gibba HOM05D004643 ORTHO05D005535 4.4e-35 152.9 334 37.1
Gohir.A08G064300 Gossypium hirsutum HOM05D004643 ORTHO05D005535 9.8e-35 151.8 270 40.7
Nitab4.5_0000252g0230 Nicotiana tabacum HOM05D004643 ORTHO05D005535 1.3e-34 151.4 341 37.5
SGA_v2.0_scaffold138G35301 Striga asiatica HOM05D004643 ORTHO05D005535 4.9e-34 149.4 317 38.5
Ah.00g000940 Amaranthus hybridus HOM05D004643 ORTHO05D005535 6.4e-34 149.1 216 45.4
Peaxi162Scf00230g00029 Petunia axillaris HOM05D004643 ORTHO05D005535 6.4e-34 149.1 324 38.6
CDE10G0665 Ceratophyllum demersum HOM05D004643 ORTHO05D005535 1.1e-33 148.3 276 39.9
AT4G14713 Arabidopsis thaliana HOM05D004643 ORTHO05D005535 5.4e-33 146.0 241 42.3
TWI73G0832 Tripterygium wilfordii HOM05D004643 ORTHO05D005535 5.4e-33 146.0 227 43.6
TAR365G0093 Trochodendron aralioides HOM05D001497 ORTHO05D001707 1.2e-32 144.8 251 42.6
Manes.05G081400 Manihot esculenta HOM05D004643 ORTHO05D005535 1.6e-32 144.4 188 48.4
ATR0665G494 Amborella trichopoda HOM05D004643 ORTHO05D005535 1.3e-31 141.4 321 35.2
CDE10G0709 Ceratophyllum demersum HOM05D004643 ORTHO05D005535 1.3e-31 141.4 290 37.9
SGA_v2.0_scaffold1G00527 Striga asiatica HOM05D004643 ORTHO05D005535 2.3e-31 140.6 259 39.8
MSTRG.18264 Avicennia marina HOM05D004643 ORTHO05D005535 1.6e-29 134.4 238 42.0
Sc13g0004740 Simmondsia chinensis HOM05D004643 ORTHO05D005535 2.8e-29 133.7 209 42.1
Lj2C1166G12 Lonicera japonica HOM05D004643 ORTHO05D005535 5.2e-28 129.4 318 36.8
SEGI_27968 Sequoiadendron giganteum HOM05D004643 ORTHO05D005535 3.2e-25 120.2 314 35.0
CARHR221170 Cardamine hirsuta HOM05D004643 ORTHO05D005535 4.1e-25 119.8 272 35.3
SHI00517 Sapria himalayana HOM05D004643 ORTHO05D005535 1.0e-23 115.2 300 32.3
Oeu047218.1 Olea europaea HOM05D004643 ORTHO05D005535 1.3e-23 114.8 163 44.2
Hund22704 Selenicereus undatus HOM05D004643 ORTHO05D005535 3.3e-22 110.2 69 81.2
unitig_60.g25785 Utricularia gibba HOM05D004643 ORTHO05D005535 2.1e-21 107.5 341 32.6
Ah.11g047360 Amaranthus hybridus HOM05D004643 ORTHO05D005535 6.2e-21 105.9 61 82.0
SMO356G0236 Selaginella moellendorffii HOM05D004643 ORTHO05D005535 6.2e-21 105.9 327 33.0
Gohir.D08G072800 Gossypium hirsutum HOM05D004643 ORTHO05D005535 1.4e-20 104.8 299 32.8
Peaxi162Scf00608g00922 Petunia axillaris HOM05D004643 ORTHO05D005535 3.1e-20 103.6 234 38.5
SMO348G0038 Selaginella moellendorffii HOM05D004643 ORTHO05D005535 1.2e-19 101.7 191 38.7
Oeu047217.1 Olea europaea HOM05D004643 ORTHO05D005535 5.8e-19 99.4 63 77.8
vmacro02609 Vaccinium macrocarpon HOM05D004643 ORTHO05D005535 5.8e-19 99.4 213 37.1
SMO153G0002 Selaginella moellendorffii HOM05D004643 ORTHO05D005535 1.1e-17 95.1 297 32.0
CBR_g49108 Chara braunii HOM05D000004 ORTHO05D038404 2.0e-11 74.3 55 58.2
COL.COLO4_09196 Corchorus olitorius HOM05D004643 ORTHO05D005535 5.4e-09 66.2 147 36.1
CSS0034684 Camellia sinensis var. sinensis HOM05D004643 ORTHO05D005535 1.5e-06 58.2 96 45.8
Lsat_1_v5_gn_5_11760 Lactuca sativa HOM05D004348 ORTHO05D006191 4.3e-06 56.6 42 59.5
Lsat_1_v5_gn_8_161541 Lactuca sativa HOM05D004643 ORTHO05D005535 4.3e-06 56.6 42 59.5
CBR_g25753 Chara braunii HOM05D003995 ORTHO05D004800 7.3e-06 55.8 136 30.9


User provided reference genes

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