Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0008363 Lotus japonicus HOM05D003871 ORTHO05D236905 1.4e-63 246.1 126 100.0
Lj3g0009639 Lotus japonicus HOM05D003871 ORTHO05D004621 1.9e-12 76.3 50 84.0
TPR.G17571 Trifolium pratense HOM05D003871 ORTHO05D004621 2.4e-10 69.3 50 76.0
Ca_23740_v3 Cicer arietinum L. HOM05D003871 ORTHO05D004621 4.0e-10 68.6 50 76.0
Ca_23745_v3 Cicer arietinum L. HOM05D003871 ORTHO05D004621 4.0e-10 68.6 50 76.0
Psat4g151960 Pisum sativum HOM05D003871 ORTHO05D004621 1.5e-09 66.6 50 72.0
Glyma.03G016800 Glycine max HOM05D003871 ORTHO05D004621 3.4e-09 65.5 50 74.0
Phvul.010G090500 Phaseolus vulgaris HOM05D003871 ORTHO05D004621 3.4e-09 65.5 50 72.0
VMungo0331G1218 Vigna mungo HOM05D003871 ORTHO05D004621 3.4e-09 65.5 50 72.0
Glyma.07G077100 Glycine max HOM05D003871 ORTHO05D004621 4.5e-09 65.1 50 74.0
Solyc01g091650.3 Solanum lycopersicum HOM05D003871 ORTHO05D004621 4.5e-09 65.1 50 74.0
Sopen01g037420 Solanum pennellii HOM05D003871 ORTHO05D004621 4.5e-09 65.1 50 74.0
Cc02_g37360 Coffea canephora HOM05D003871 ORTHO05D004621 7.6e-09 64.3 50 70.0
Medtr8g432630 Medicago truncatula HOM05D003871 ORTHO05D004621 7.6e-09 64.3 50 70.0
Duzib133G0086 Durio zibethinus HOM05D003871 ORTHO05D004621 9.9e-09 63.9 50 74.0
Lj7C518G12 Lonicera japonica HOM05D003871 ORTHO05D004621 9.9e-09 63.9 50 70.0
COL.COLO4_12614 Corchorus olitorius HOM05D003871 ORTHO05D004621 1.3e-08 63.5 50 72.0
Duzib138G1891 Durio zibethinus HOM05D003871 ORTHO05D004621 1.3e-08 63.5 50 72.0
Nitab4.5_0004973g0020 Nicotiana tabacum HOM05D003871 ORTHO05D004621 1.7e-08 63.2 50 72.0
CAN.G170.26 Capsicum annuum HOM05D003871 ORTHO05D004621 2.9e-08 62.4 50 72.0
TWI23G1177 Tripterygium wilfordii HOM05D003871 ORTHO05D004621 2.9e-08 62.4 50 70.0
Hma1.2p1_0033F.1_g020520 Hydrangea macrophylla HOM05D003871 ORTHO05D004621 3.8e-08 62.0 50 68.0
Lalb_Chr17g0339991 Lupinus albus HOM05D003871 ORTHO05D004621 3.8e-08 62.0 52 71.2
Nitab4.5_0005109g0020 Nicotiana tabacum HOM05D003871 ORTHO05D004621 3.8e-08 62.0 50 70.0
Sed0001471 Sechium edule HOM05D003871 ORTHO05D004621 3.8e-08 62.0 50 70.0
Thecc.01G366900 Theobroma cacao HOM05D003871 ORTHO05D004621 3.8e-08 62.0 50 70.0
Lsat_1_v5_gn_4_37061 Lactuca sativa HOM05D003871 ORTHO05D004621 4.9e-08 61.6 50 68.0
EL10Ac1g00989 Beta vulgaris HOM05D003871 ORTHO05D004621 6.4e-08 61.2 56 67.9
Gohir.D11G089800 Gossypium hirsutum HOM05D003871 ORTHO05D004621 6.4e-08 61.2 50 68.0
Gorai.007G095800 Gossypium raimondii HOM05D003871 ORTHO05D004621 6.4e-08 61.2 50 68.0
Manes.05G039500 Manihot esculenta HOM05D003871 ORTHO05D004621 6.4e-08 61.2 50 70.0
Hund16957 Selenicereus undatus HOM05D003871 ORTHO05D004621 6.4e-08 61.2 50 68.0
Atru.chr5.417 Acer truncatum HOM05D003871 ORTHO05D004621 8.4e-08 60.8 50 68.0
Ca_07858_v3 Cicer arietinum L. HOM05D003871 ORTHO05D004621 8.4e-08 60.8 51 70.6
MBI12_g36508_MAGBIO Magnolia biondii HOM05D003871 ORTHO05D004621 8.4e-08 60.8 52 67.3
Hund27317 Selenicereus undatus HOM05D003871 ORTHO05D004621 8.4e-08 60.8 50 70.0
TWI14G1012 Tripterygium wilfordii HOM05D003871 ORTHO05D004621 8.4e-08 60.8 50 68.0
CSS0031493 Camellia sinensis var. sinensis HOM05D003871 ORTHO05D004621 1.1e-07 60.5 50 66.0
CSS0038711 Camellia sinensis var. sinensis HOM05D003871 ORTHO05D004621 1.1e-07 60.5 50 66.0
HanXRQChr17g0560011 Helianthus annuus HOM05D003871 ORTHO05D004621 1.1e-07 60.5 50 66.0
Peaxi162Scf00021g00920 Petunia axillaris HOM05D003871 ORTHO05D004621 1.1e-07 60.5 51 68.6
GSVIVG01027510001 Vitis vinifera HOM05D003871 ORTHO05D004621 1.1e-07 60.5 50 68.0
Aqoxy7G00418 Aquilegia oxysepala HOM05D003871 ORTHO05D004621 1.4e-07 60.1 50 68.0
Dinv16518 Davidia involucrata HOM05D003871 ORTHO05D004621 1.4e-07 60.1 50 68.0
TAR374G1595 Trochodendron aralioides HOM05D003871 ORTHO05D004621 1.4e-07 60.1 50 68.0
Dinv43765 Davidia involucrata HOM05D003871 ORTHO05D004621 1.9e-07 59.7 50 68.0
Gohir.A11G085600 Gossypium hirsutum HOM05D003871 ORTHO05D004621 1.9e-07 59.7 50 66.0
PGSC0003DMG400027768 Solanum tuberosum HOM05D003871 ORTHO05D004621 1.9e-07 59.7 50 68.0
TAR375G0585 Trochodendron aralioides HOM05D003871 ORTHO05D004621 1.9e-07 59.7 50 68.0
arahy.Tifrunner.gnm1.ann1.6U8ZH2 Arachis hypogaea HOM05D003871 ORTHO05D004621 2.4e-07 59.3 55 67.3
arahy.Tifrunner.gnm1.ann1.AB99XC Arachis hypogaea HOM05D003871 ORTHO05D004621 2.4e-07 59.3 55 67.3
MSTRG.4874 Avicennia marina HOM05D003871 ORTHO05D004621 2.4e-07 59.3 50 68.0
HanXRQChr16g0523641 Helianthus annuus HOM05D003871 ORTHO05D004621 2.4e-07 59.3 50 66.0
PGR042G2189 Punica granatum HOM05D003871 ORTHO05D004621 2.4e-07 59.3 50 68.0
Sp5g02240 Schrenkiella parvula HOM05D003871 ORTHO05D004621 2.4e-07 59.3 51 70.6
Carub.0005s2779 Capsella rubella HOM05D003871 ORTHO05D004621 3.2e-07 58.9 51 68.6
Gohir.D12G107500 Gossypium hirsutum HOM05D003871 ORTHO05D004621 3.2e-07 58.9 50 68.0
Gorai.008G117100 Gossypium raimondii HOM05D003871 ORTHO05D004621 3.2e-07 58.9 50 68.0
Nn1g01381 Nelumbo nucifera HOM05D003871 ORTHO05D004621 3.2e-07 58.9 50 66.0
PSO782G3116 Papaver somniferum HOM05D003871 ORTHO05D004621 3.2e-07 58.9 50 62.0
Aa31LG10G15210 Aethionema arabicum HOM05D003871 ORTHO05D004621 4.2e-07 58.5 51 68.6
ClCG05G001830 Citrullus lanatus HOM05D003871 ORTHO05D004621 4.2e-07 58.5 53 66.0
MELO3C006142.2 Cucumis melo HOM05D003871 ORTHO05D004621 4.2e-07 58.5 53 66.0
PSO478G4452 Papaver somniferum HOM05D003871 ORTHO05D004621 4.2e-07 58.5 50 60.0
PSO782G0235 Papaver somniferum HOM05D003871 ORTHO05D004621 4.2e-07 58.5 50 62.0
CsaV3_3G009220 Cucumis sativus L. HOM05D003871 ORTHO05D004621 5.5e-07 58.2 53 66.0
Sed0018711 Sechium edule HOM05D003871 ORTHO05D004621 5.5e-07 58.2 53 66.0
Actinidia38295 Actinidia chinensis HOM05D003871 ORTHO05D004621 7.1e-07 57.8 50 62.0
Gohir.A12G104100 Gossypium hirsutum HOM05D003871 ORTHO05D004621 7.1e-07 57.8 50 66.0
Lsat_1_v5_gn_9_24280 Lactuca sativa HOM05D003871 ORTHO05D004621 7.1e-07 57.8 50 62.0
Potri.002G154500 Populus trichocarpa HOM05D003871 ORTHO05D004621 7.1e-07 57.8 53 64.2
Sabra02G0122500 Salix brachista HOM05D003871 ORTHO05D004621 7.1e-07 57.8 53 64.2
BcaC07g42655 Brassica carinata HOM05D003871 ORTHO05D004621 9.3e-07 57.4 51 66.7
Thhalv10005978m.g Eutrema salsugineum HOM05D003871 ORTHO05D004621 9.3e-07 57.4 51 68.6
HPP92_007366 Vanilla planifolia HOM05D003871 ORTHO05D004621 9.3e-07 57.4 55 60.0
BcaC07g40617 Brassica carinata HOM05D003871 ORTHO05D004621 1.2e-06 57.0 51 64.7
Ciclev10020177m.g Citrus clementina HOM05D003871 ORTHO05D004621 1.2e-06 57.0 50 64.0
Rhsim07G0020500 Rhododendron simsii HOM05D003871 ORTHO05D004621 1.2e-06 57.0 51 60.8
arahy.Tifrunner.gnm1.ann1.I68A9W Arachis hypogaea HOM05D003871 ORTHO05D004621 1.6e-06 56.6 52 67.3
arahy.Tifrunner.gnm1.ann1.WVA4TF Arachis hypogaea HOM05D003871 ORTHO05D004621 1.6e-06 56.6 52 67.3
CiPaw.02G026100 Carya illinoinensis HOM05D003871 ORTHO05D004621 1.6e-06 56.6 50 68.0
Lsat_1_v5_gn_8_32720 Lactuca sativa HOM05D003110 ORTHO05D003585 1.6e-06 56.6 50 62.0
Lalb_Chr10g0097451 Lupinus albus HOM05D003871 ORTHO05D004621 1.6e-06 56.6 52 63.5
vmacro20965 Vaccinium macrocarpon HOM05D003871 ORTHO05D004621 1.6e-06 56.6 49 61.2
A09p53200 Brassica napus HOM05D003871 ORTHO05D004621 2.1e-06 56.2 52 63.5
BraA09t40745Z Brassica rapa HOM05D003871 ORTHO05D004621 2.1e-06 56.2 52 63.5
Potri.014G075500 Populus trichocarpa HOM05D003871 ORTHO05D004621 2.1e-06 56.2 53 62.3
SalBow3G3192 Salvia bowleyana HOM05D003871 ORTHO05D004621 2.1e-06 56.2 50 66.0
unitig_22.g5361 Utricularia gibba HOM05D003871 ORTHO05D004621 2.1e-06 56.2 50 66.0
vmacro13332 Vaccinium macrocarpon HOM05D003871 ORTHO05D004621 2.1e-06 56.2 50 62.0
Actinidia32928 Actinidia chinensis HOM05D003871 ORTHO05D004621 2.7e-06 55.8 50 60.0
ATR0757G035 Amborella trichopoda HOM05D003871 ORTHO05D004621 2.7e-06 55.8 50 60.0
C08p35990 Brassica napus HOM05D003871 ORTHO05D004621 2.7e-06 55.8 51 60.8
BolC8t51181H Brassica oleracea HOM05D003871 ORTHO05D004621 2.7e-06 55.8 51 60.8
TPR.G37846 Trifolium pratense HOM05D003871 ORTHO05D004621 2.7e-06 55.8 51 66.7
AL5G43380 Arabidopsis lyrata HOM05D003871 ORTHO05D004621 3.5e-06 55.5 51 66.7
CSS0026628 Camellia sinensis var. sinensis HOM05D003871 ORTHO05D004621 3.5e-06 55.5 50 62.0
CSS0039371 Camellia sinensis var. sinensis HOM05D003871 ORTHO05D004621 3.5e-06 55.5 50 62.0
Gohir.A06G193200 Gossypium hirsutum HOM05D003871 ORTHO05D004621 3.5e-06 55.5 50 64.0
SEGI_36445 Sequoiadendron giganteum HOM05D003871 ORTHO05D004621 3.5e-06 55.5 78 47.4
CiPaw.02G026000 Carya illinoinensis HOM05D003871 ORTHO05D004621 4.6e-06 55.1 50 66.0
Migut.B01700 Erythranthe guttata HOM05D003871 ORTHO05D004621 4.6e-06 55.1 50 62.0
Haze_15212 Corylus avellana HOM05D003871 ORTHO05D004621 6.0e-06 54.7 50 64.0
Rhsim01G0153400 Rhododendron simsii HOM05D003871 ORTHO05D004621 6.0e-06 54.7 49 63.3
ECA234G1945 Erigeron canadensis HOM05D003871 ORTHO05D005816 7.9e-06 54.3 47 68.1
FvH4_7g13330 Fragaria vesca HOM05D003871 ORTHO05D004621 7.9e-06 54.3 53 58.5
FAN01G1876 Fragaria x ananassa HOM05D003871 ORTHO05D004621 7.9e-06 54.3 53 58.5
FAN06G3893 Fragaria x ananassa HOM05D003871 ORTHO05D004621 7.9e-06 54.3 53 58.5
FAN06G4052 Fragaria x ananassa HOM05D003871 ORTHO05D004621 7.9e-06 54.3 53 58.5
FAN10G0206 Fragaria x ananassa HOM05D003871 ORTHO05D004621 7.9e-06 54.3 53 58.5
Gohir.A05G281600 Gossypium hirsutum HOM05D003871 ORTHO05D004621 7.9e-06 54.3 50 62.0
SGA_v2.0_scaffold95G28865 Striga asiatica HOM05D003871 ORTHO05D004621 7.9e-06 54.3 50 60.0


User provided reference genes

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