Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0008305 Lotus japonicus HOM05D002674 ORTHO05D008041 3.1e-51 204.9 109 100.0
Phvul.007G146200 Phaseolus vulgaris HOM05D002674 ORTHO05D008041 2.5e-40 168.7 107 84.1
Psat6g166360 Pisum sativum HOM05D002674 ORTHO05D008041 5.5e-40 167.5 107 84.1
VMungo0720G1979 Vigna mungo HOM05D002674 ORTHO05D008041 5.5e-40 167.5 107 83.2
arahy.Tifrunner.gnm1.ann1.9NAT9F Arachis hypogaea HOM05D002674 ORTHO05D008041 9.4e-40 166.8 107 79.4
arahy.Tifrunner.gnm1.ann1.UV7MYU Arachis hypogaea HOM05D002674 ORTHO05D008041 9.4e-40 166.8 107 79.4
Ca_10338_v3 Cicer arietinum L. HOM05D002674 ORTHO05D008041 3.6e-39 164.9 107 82.2
Glyma.10G018500 Glycine max HOM05D002674 ORTHO05D008041 8.0e-39 163.7 107 80.4
Medtr1g088550 Medicago truncatula HOM05D002674 ORTHO05D008041 9.7e-37 156.8 107 76.6
Lalb_Chr21g0306851 Lupinus albus HOM05D002674 ORTHO05D008041 3.7e-36 154.8 105 77.1
Sabra02G0154500 Salix brachista HOM05D002674 ORTHO05D008041 7.0e-35 150.6 102 77.5
TPR.G34008 Trifolium pratense HOM05D002674 ORTHO05D008041 5.9e-34 147.5 107 71.0
CANSAT25G0502 Cannabis sativa HOM05D002674 ORTHO05D008041 1.0e-33 146.7 105 71.4
COL.COLO4_23349 Corchorus olitorius HOM05D002674 ORTHO05D008041 1.0e-33 146.7 107 73.8
Thecc.01G300000 Theobroma cacao HOM05D002674 ORTHO05D008041 1.7e-33 146.0 107 73.8
Potri.014G129800 Populus trichocarpa HOM05D002674 ORTHO05D008041 5.0e-33 144.4 102 74.5
RcHm_v2.0_Chr6g0293971 Rosa chinensis HOM05D002674 ORTHO05D008041 1.5e-32 142.9 105 72.4
Duzib133G1209 Durio zibethinus HOM05D002674 ORTHO05D007700 1.9e-32 142.5 107 71.0
Dinv19696 Davidia involucrata HOM05D002674 ORTHO05D008041 2.5e-32 142.1 103 72.8
Actinidia32214 Actinidia chinensis HOM05D002674 ORTHO05D008041 3.2e-32 141.7 104 72.1
Gohir.D08G085400 Gossypium hirsutum HOM05D002674 ORTHO05D008041 4.2e-32 141.4 106 70.8
Gohir.A08G076000 Gossypium hirsutum HOM05D002674 ORTHO05D008041 5.5e-32 141.0 106 69.8
Haze_04934 Corylus avellana HOM05D002674 ORTHO05D008041 7.2e-32 140.6 103 71.8
Dinv33053 Davidia involucrata HOM05D002674 ORTHO05D007700 7.2e-32 140.6 102 71.6
FvH4_2g25692 Fragaria vesca HOM05D002674 ORTHO05D008041 7.2e-32 140.6 105 71.4
Cfa005915 Carpinus fangiana HOM05D002674 ORTHO05D008041 1.2e-31 139.8 103 70.9
ClCG10G010910 Citrullus lanatus HOM05D002674 ORTHO05D008041 1.2e-31 139.8 105 69.5
TAR636G2182 Trochodendron aralioides HOM05D002674 ORTHO05D008041 1.2e-31 139.8 107 70.1
CSS0018179 Camellia sinensis var. sinensis HOM05D002674 ORTHO05D008041 2.7e-31 138.7 104 70.2
Cpa.g.sc9.264 Carica papaya HOM05D002674 ORTHO05D008041 2.7e-31 138.7 105 68.6
TWI14G1447 Tripterygium wilfordii HOM05D002674 ORTHO05D008041 3.6e-31 138.3 107 69.2
CiPaw.07G108500 Carya illinoinensis HOM05D002674 ORTHO05D008041 6.1e-31 137.5 103 70.9
AUR62033146 Chenopodium quinoa HOM05D002674 ORTHO05D008041 1.0e-30 136.7 107 66.4
MD11G1310400 Malus domestica HOM05D002674 ORTHO05D008041 1.0e-30 136.7 107 69.2
PGR119G0614 Punica granatum HOM05D002674 ORTHO05D008041 1.4e-30 136.3 103 68.0
Sed0019690 Sechium edule HOM05D002674 ORTHO05D008041 1.4e-30 136.3 107 68.2
CsaV3_4G000790 Cucumis sativus L. HOM05D002674 ORTHO05D008041 1.8e-30 136.0 105 65.7
ECA247G1692 Erigeron canadensis HOM05D002674 ORTHO05D008041 1.8e-30 136.0 104 69.2
FvH4_3g17380 Fragaria vesca HOM05D002674 ORTHO05D008041 1.8e-30 136.0 105 70.5
FAN11G2206 Fragaria x ananassa HOM05D002674 ORTHO05D008041 1.8e-30 136.0 105 70.5
MSTRG.21632 Avicennia marina HOM05D002674 ORTHO05D008041 2.3e-30 135.6 103 68.0
AUR62008625 Chenopodium quinoa HOM05D002674 ORTHO05D008041 3.0e-30 135.2 107 65.4
FAN16G1943 Fragaria x ananassa HOM05D002674 ORTHO05D008041 5.2e-30 134.4 105 69.5
FAN21G2416 Fragaria x ananassa HOM05D002674 ORTHO05D008041 5.2e-30 134.4 105 69.5
FAN25G1445 Fragaria x ananassa HOM05D002674 ORTHO05D008041 5.2e-30 134.4 105 70.5
Prupe.8G261100 Prunus persica HOM05D002674 ORTHO05D008041 6.8e-30 134.0 105 68.6
QL12p028510 Quercus lobata HOM05D002674 ORTHO05D008041 6.8e-30 134.0 101 68.3
EL10Ac7g17468 Beta vulgaris HOM05D002674 ORTHO05D008041 1.2e-29 133.3 107 65.4
MELO3C017957.2 Cucumis melo HOM05D002674 ORTHO05D008041 1.2e-29 133.3 105 64.8
HanXRQChr15g0465661 Helianthus annuus HOM05D002674 ORTHO05D008041 1.2e-29 133.3 103 68.9
Nn3g21482 Nelumbo nucifera HOM05D002674 ORTHO05D008041 2.0e-29 132.5 107 66.4
GSVIVG01028011001 Vitis vinifera HOM05D002674 ORTHO05D008041 2.0e-29 132.5 102 66.7
Nitab4.5_0001879g0010 Nicotiana tabacum HOM05D002674 ORTHO05D008041 3.4e-29 131.7 101 68.3
Nitab4.5_0008207g0030 Nicotiana tabacum HOM05D002674 ORTHO05D008041 3.4e-29 131.7 101 68.3
Atru.chr5.1150 Acer truncatum HOM05D002674 ORTHO05D008041 4.4e-29 131.3 107 63.6
Hund18156 Selenicereus undatus HOM05D002674 ORTHO05D008041 5.7e-29 131.0 107 67.3
MD03G1287900 Malus domestica HOM05D002674 ORTHO05D008041 7.5e-29 130.6 107 64.5
Oeu048338.1 Olea europaea HOM05D002674 ORTHO05D008041 7.5e-29 130.6 101 68.3
SGA_v2.0_scaffold2G01395 Striga asiatica HOM05D002674 ORTHO05D008041 7.5e-29 130.6 103 66.0
Eucgr.H01115 Eucalyptus grandis HOM05D002674 ORTHO05D008041 9.8e-29 130.2 104 63.5
Atru.chr7.1564 Acer truncatum HOM05D002674 ORTHO05D008041 1.7e-28 129.4 105 62.9
SalBow3G0298 Salvia bowleyana HOM05D002674 ORTHO05D008041 1.7e-28 129.4 105 64.8
PGR044G1069 Punica granatum HOM05D002674 ORTHO05D008041 2.2e-28 129.0 101 68.3
Manes.01G218700 Manihot esculenta HOM05D002674 ORTHO05D008041 2.8e-28 128.6 101 66.3
Sp5g00710 Schrenkiella parvula HOM05D002674 ORTHO05D008041 4.8e-28 127.9 106 62.3
Thhalv10006327m.g Eutrema salsugineum HOM05D002674 ORTHO05D008041 6.3e-28 127.5 106 61.3
Solyc09g075100.3 Solanum lycopersicum HOM05D002674 ORTHO05D008041 6.3e-28 127.5 103 66.0
Sopen09g029920 Solanum pennellii HOM05D002674 ORTHO05D008041 6.3e-28 127.5 103 66.0
TWI23G1311 Tripterygium wilfordii HOM05D002674 ORTHO05D008041 6.3e-28 127.5 105 64.8
Peaxi162Scf00001g00445 Petunia axillaris HOM05D002674 ORTHO05D008041 8.3e-28 127.1 103 65.0
Aqoxy5G00753 Aquilegia oxysepala HOM05D002674 ORTHO05D008041 1.1e-27 126.7 103 65.0
CAN.G472.1 Capsicum annuum HOM05D002674 ORTHO05D008041 1.1e-27 126.7 103 65.0
Ciclev10022953m.g Citrus clementina HOM05D002674 ORTHO05D008041 1.1e-27 126.7 103 63.1
Lalb_Chr02g0143261 Lupinus albus HOM05D000266 ORTHO05D008041 1.1e-27 126.7 85 76.5
Rhsim13G0010400 Rhododendron simsii HOM05D002674 ORTHO05D008041 1.1e-27 126.7 119 61.3
PGSC0003DMG400011376 Solanum tuberosum HOM05D002674 ORTHO05D008041 1.1e-27 126.7 103 66.0
unitig_61.g26303 Utricularia gibba HOM05D002674 ORTHO05D008041 1.4e-27 126.3 102 60.8
Migut.D00216 Erythranthe guttata HOM05D002674 ORTHO05D008041 2.4e-27 125.6 103 63.1
CDE12G0521 Ceratophyllum demersum HOM05D002674 ORTHO05D008041 3.1e-27 125.2 102 65.7
ATR0796G030 Amborella trichopoda HOM05D002674 ORTHO05D008041 4.1e-27 124.8 103 62.1
BcaC02g10314 Brassica carinata HOM05D002674 ORTHO05D008041 7.0e-27 124.0 106 61.3
A04p00510 Brassica napus HOM05D002674 ORTHO05D008041 7.0e-27 124.0 106 61.3
BolC4t24576H Brassica oleracea HOM05D002674 ORTHO05D008041 7.0e-27 124.0 106 61.3
BraA04t15771Z Brassica rapa HOM05D002674 ORTHO05D008041 7.0e-27 124.0 106 61.3
AT3G62810 Arabidopsis thaliana HOM05D002674 ORTHO05D008041 9.1e-27 123.6 106 61.3
MBI19_g25355_MAGBIO Magnolia biondii HOM05D002674 ORTHO05D008041 9.1e-27 123.6 106 62.3
AL5G45590 Arabidopsis lyrata HOM05D002674 ORTHO05D008041 1.6e-26 122.9 106 61.3
BcaC07g42733 Brassica carinata HOM05D002674 ORTHO05D008041 1.6e-26 122.9 106 61.3
Cc01_g20820 Coffea canephora HOM05D002674 ORTHO05D008041 1.6e-26 122.9 101 63.4
Carub.0005s2947 Capsella rubella HOM05D002674 ORTHO05D008041 3.5e-26 121.7 106 59.4
Aa31LG10G16570 Aethionema arabicum HOM05D002674 ORTHO05D008041 4.5e-26 121.3 106 58.5
BcaB02g08097 Brassica carinata HOM05D002674 ORTHO05D008041 5.9e-26 120.9 106 60.4
C04p30420 Brassica napus HOM05D002674 ORTHO05D008041 1.3e-25 119.8 106 59.4
CARHR173080 Cardamine hirsuta HOM05D002674 ORTHO05D008041 2.9e-25 118.6 106 59.4
Glyma.02G018200 Glycine max HOM05D002674 ORTHO05D008041 6.5e-25 117.5 83 74.7
BraA09t40877Z Brassica rapa HOM05D002674 ORTHO05D008041 1.9e-24 115.9 106 60.4
vmacro02452 Vaccinium macrocarpon HOM05D002674 ORTHO05D008041 5.5e-24 114.4 157 49.0
A09p54660 Brassica napus HOM05D002674 ORTHO05D008041 1.6e-23 112.8 106 58.5
Sabra14G0096400 Salix brachista HOM05D002674 ORTHO05D008041 2.8e-23 112.1 99 59.6
Os05g0363600 Oryza sativa ssp. japonica HOM05D002674 ORTHO05D008041 1.0e-22 110.2 104 56.7
Duzib138G1033 Durio zibethinus HOM05D002674 ORTHO05D008041 5.2e-22 107.8 81 71.6
Haze_04957 Corylus avellana HOM05D002674 ORTHO05D008041 6.8e-22 107.5 79 72.2
SEGI_38702 Sequoiadendron giganteum HOM05D002674 ORTHO05D008041 1.5e-21 106.3 105 54.3
Zm00001eb346590 Zea mays HOM05D002674 ORTHO05D008041 4.4e-21 104.8 104 52.9
Lsat_1_v5_gn_9_5640 Lactuca sativa HOM05D002674 ORTHO05D008643 7.5e-21 104.0 81 71.6
Oeu010670.1 Olea europaea HOM05D002674 ORTHO05D008041 7.5e-21 104.0 101 58.4
PSO832G1306 Papaver somniferum HOM05D002674 ORTHO05D008041 7.5e-21 104.0 103 53.4
Gorai.004G089900 Gossypium raimondii HOM05D002674 ORTHO05D008041 9.8e-21 103.6 79 69.6
PSO210G6076 Papaver somniferum HOM05D002674 ORTHO05D008041 9.8e-21 103.6 103 52.4
HPP92_013721 Vanilla planifolia HOM05D002674 ORTHO05D008041 4.9e-20 101.3 176 38.1
Sc24g0003780 Simmondsia chinensis HOM05D002674 ORTHO05D008041 8.3e-20 100.5 79 68.4
SalBow3G1515 Salvia bowleyana HOM05D002674 ORTHO05D008041 9.2e-19 97.1 85 62.4
SalBow5G2922 Salvia bowleyana HOM05D002674 ORTHO05D008041 2.0e-18 95.9 85 60.0
CDE01G0164 Ceratophyllum demersum HOM05D002674 ORTHO05D008041 2.7e-18 95.5 81 64.2
Ah.15g093210 Amaranthus hybridus HOM05D002674 ORTHO05D008041 1.0e-17 93.6 82 63.4
DCAR_002831 Daucus carota HOM05D000067 ORTHO05D001807 8.6e-17 90.5 79 64.6
Hma1.2p1_0491F.1_g164520 Hydrangea macrophylla HOM05D002674 ORTHO05D008041 1.5e-16 89.7 76 60.5
Mapoly0061s0038 Marchantia polymorpha HOM05D002674 ORTHO05D008041 3.0e-14 82.0 104 46.2
C08p37560 Brassica napus HOM05D002674 ORTHO05D008041 5.2e-14 81.3 75 58.7
Pp3c9_7930 Physcomitrium patens HOM05D002674 ORTHO05D008041 8.9e-14 80.5 97 46.4
RcHm_v2.0_Chr2g0146991 Rosa chinensis HOM05D002674 ORTHO05D008041 2.9e-12 75.5 53 73.6
AagrBONN_evm.TU.Sc2ySwM_362.373 Anthoceros agrestis HOM05D002674 ORTHO05D008041 8.3e-12 73.9 95 46.3
Peaxi162Scf00545g00027 Petunia axillaris HOM05D002674 ORTHO05D008041 1.6e-07 59.7 50 58.0
BcaC07g40760 Brassica carinata HOM05D002674 ORTHO05D008041 8.0e-07 57.4 52 53.8
BolC8t51336H Brassica oleracea HOM05D002674 ORTHO05D008041 8.0e-07 57.4 52 53.8
Cre07.g332150 Chlamydomonas reinhardtii HOM05D002674 ORTHO05D008041 8.9e-06 53.9 89 34.8


User provided reference genes

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