Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0008258 Lotus japonicus HOM05D001046 ORTHO05D005883 8.5e-69 263.5 126 100.0
Lj2g0010388 Lotus japonicus HOM05D001046 ORTHO05D005883 1.6e-46 189.5 95 96.8
Lj2g0002950 Lotus japonicus HOM05D001046 ORTHO05D005883 5.6e-12 74.7 37 100.0
Phvul.003G034100 Phaseolus vulgaris HOM05D001046 ORTHO05D005883 8.1e-11 70.9 37 94.6
VMungo1215G2127 Vigna mungo HOM05D001046 ORTHO05D005883 1.8e-10 69.7 37 91.9
Medtr0010s0220 Medicago truncatula HOM05D001046 ORTHO05D005883 2.4e-10 69.3 37 94.6
Glyma.01G093902 Glycine max HOM05D001046 ORTHO05D005883 5.3e-10 68.2 37 91.9
Glyma.02G128900 Glycine max HOM05D001046 ORTHO05D005883 5.3e-10 68.2 37 91.9
Lalb_Chr04g0255081 Lupinus albus HOM05D001046 ORTHO05D005883 9.0e-10 67.4 37 91.9
arahy.Tifrunner.gnm1.ann1.L5PVB5 Arachis hypogaea HOM05D001046 ORTHO05D005883 1.5e-09 66.6 37 81.1
arahy.Tifrunner.gnm1.ann1.X1G7WL Arachis hypogaea HOM05D001046 ORTHO05D005883 1.5e-09 66.6 37 81.1
Psat0s251g0040 Pisum sativum HOM05D001046 ORTHO05D005883 3.4e-09 65.5 37 89.2
FAN07G2005 Fragaria x ananassa HOM05D001046 ORTHO05D005883 5.8e-09 64.7 41 78.0
Cfa008799 Carpinus fangiana HOM05D001046 ORTHO05D005883 9.9e-09 63.9 37 86.5
MD16G1051700 Malus domestica HOM05D001046 ORTHO05D005883 9.9e-09 63.9 41 75.6
Ca_30097_v3 Cicer arietinum L. HOM05D001046 ORTHO05D005883 1.3e-08 63.5 37 86.5
Aqoxy3G00421 Aquilegia oxysepala HOM05D001046 ORTHO05D005883 2.9e-08 62.4 37 78.4
FvH4_4g28521 Fragaria vesca HOM05D001046 ORTHO05D005883 2.9e-08 62.4 37 83.8
FAN12G0380 Fragaria x ananassa HOM05D001046 ORTHO05D005883 2.9e-08 62.4 37 83.8
FAN17G2519 Fragaria x ananassa HOM05D001046 ORTHO05D005883 2.9e-08 62.4 37 83.8
FAN22G0985 Fragaria x ananassa HOM05D001046 ORTHO05D005883 2.9e-08 62.4 37 83.8
GSVIVG01012023001 Vitis vinifera HOM05D001046 ORTHO05D005883 3.8e-08 62.0 37 81.1
Nitab4.5_0000259g0330 Nicotiana tabacum HOM05D001046 ORTHO05D005883 4.9e-08 61.6 63 52.4
Dinv27415 Davidia involucrata HOM05D001046 ORTHO05D005883 8.4e-08 60.8 67 53.7
Gohir.D12G160700 Gossypium hirsutum HOM05D001046 ORTHO05D005883 8.4e-08 60.8 54 61.1
Gorai.008G173700 Gossypium raimondii HOM05D001046 ORTHO05D005883 8.4e-08 60.8 54 61.1
TAR629G1491 Trochodendron aralioides HOM05D001046 ORTHO05D005883 8.4e-08 60.8 37 81.1
ATR0691G253 Amborella trichopoda HOM05D001046 ORTHO05D005883 1.1e-07 60.5 37 81.1
CiPaw.05G117600 Carya illinoinensis HOM05D001046 ORTHO05D005883 1.1e-07 60.5 37 83.8
Ciclev10030592m.g Citrus clementina HOM05D001046 ORTHO05D005883 1.1e-07 60.5 37 81.1
COL.COLO4_27721 Corchorus olitorius HOM05D001046 ORTHO05D005883 1.1e-07 60.5 40 75.0
Lj3C1023G11 Lonicera japonica HOM05D001046 ORTHO05D005883 1.1e-07 60.5 67 50.7
Nn3g17629 Nelumbo nucifera HOM05D001046 ORTHO05D005883 1.4e-07 60.1 37 78.4
QL03p044493 Quercus lobata HOM05D001046 ORTHO05D005883 1.4e-07 60.1 37 78.4
TWI79G0779 Tripterygium wilfordii HOM05D001046 ORTHO05D005883 1.4e-07 60.1 37 83.8
Aa31LG7G8840 Aethionema arabicum HOM05D001046 ORTHO05D005883 1.9e-07 59.7 41 70.7
Duzib248G1558 Durio zibethinus HOM05D001046 ORTHO05D005883 1.9e-07 59.7 54 59.3
Haze_11811 Corylus avellana HOM05D001046 ORTHO05D005883 2.4e-07 59.3 37 81.1
Gohir.A12G157800 Gossypium hirsutum HOM05D001046 ORTHO05D005883 2.4e-07 59.3 54 59.3
PSO017G2748 Papaver somniferum HOM05D001046 ORTHO05D005883 3.2e-07 58.9 41 70.7
PSO478G0796 Papaver somniferum HOM05D001046 ORTHO05D005883 3.2e-07 58.9 41 70.7
Thecc.02G315500 Theobroma cacao HOM05D001046 ORTHO05D005883 3.2e-07 58.9 54 59.3
Manes.06G076400 Manihot esculenta HOM05D001046 ORTHO05D005883 4.2e-07 58.5 37 73.0
Rhsim08G0040600 Rhododendron simsii HOM05D001046 ORTHO05D005883 4.2e-07 58.5 37 78.4
vmacro18368 Vaccinium macrocarpon HOM05D001046 ORTHO05D005883 4.2e-07 58.5 37 78.4
Oeu002624.1 Olea europaea HOM05D001046 ORTHO05D005883 5.5e-07 58.2 37 75.7
Sp1g22490 Schrenkiella parvula HOM05D001046 ORTHO05D005883 5.5e-07 58.2 40 70.0
unitig_699.g19897 Utricularia gibba HOM05D001046 ORTHO05D005883 5.5e-07 58.2 39 69.2
Actinidia30169 Actinidia chinensis HOM05D001046 ORTHO05D005883 7.1e-07 57.8 37 75.7
CANSAT64G1908 Cannabis sativa HOM05D001046 ORTHO05D005883 7.1e-07 57.8 37 75.7
MBI15_g18373_MAGBIO Magnolia biondii HOM05D001046 ORTHO05D005883 7.1e-07 57.8 37 75.7
Potri.008G109300 Populus trichocarpa HOM05D001046 ORTHO05D005883 7.1e-07 57.8 41 70.7
RcHm_v2.0_Chr4g0436541 Rosa chinensis HOM05D001046 ORTHO05D005883 7.1e-07 57.8 37 78.4
EL10Ac6g14562 Beta vulgaris HOM05D001046 ORTHO05D005883 9.3e-07 57.4 40 72.5
CSS0000214 Camellia sinensis var. sinensis HOM05D001046 ORTHO05D005883 9.3e-07 57.4 37 75.7
Nitab4.5_0006347g0030 Nicotiana tabacum HOM05D001046 ORTHO05D005883 9.3e-07 57.4 37 73.0
Peaxi162Scf00188g00433 Petunia axillaris HOM05D001046 ORTHO05D005883 9.3e-07 57.4 37 73.0
SalBow8G4857 Salvia bowleyana HOM05D001046 ORTHO05D005883 9.3e-07 57.4 39 69.2
HPP92_018028 Vanilla planifolia HOM05D001046 ORTHO05D005883 9.3e-07 57.4 37 75.7
Cc11_g11040 Coffea canephora HOM05D001046 ORTHO05D005883 1.2e-06 57.0 37 75.7
HanXRQChr15g0475941 Helianthus annuus HOM05D001046 ORTHO05D005883 1.2e-06 57.0 37 75.7
Lsat_1_v5_gn_3_62681 Lactuca sativa HOM05D001046 ORTHO05D005883 1.2e-06 57.0 37 73.0
Prupe.1G300500 Prunus persica HOM05D001046 ORTHO05D005883 1.2e-06 57.0 37 75.7
Sabra08G0083000 Salix brachista HOM05D001046 ORTHO05D005883 1.6e-06 56.6 41 68.3
SGA_v2.0_scaffold32G13175 Striga asiatica HOM05D001046 ORTHO05D005883 1.6e-06 56.6 37 75.7
Ah.03g138130 Amaranthus hybridus HOM05D001046 ORTHO05D005883 2.1e-06 56.2 53 58.5
ECA246G0060 Erigeron canadensis HOM05D001046 ORTHO05D005883 2.1e-06 56.2 37 73.0
Eucgr.B03078 Eucalyptus grandis HOM05D001046 ORTHO05D005883 2.7e-06 55.8 37 70.3
Potri.T108626 Populus trichocarpa HOM05D001046 ORTHO05D005883 2.7e-06 55.8 41 68.3
Hund25120 Selenicereus undatus HOM05D001046 ORTHO05D005883 2.7e-06 55.8 37 70.3
SEGI_15773 Sequoiadendron giganteum HOM05D001046 ORTHO05D005883 2.7e-06 55.8 37 70.3
Solyc05g010160.3 Solanum lycopersicum HOM05D001046 ORTHO05D005883 2.7e-06 55.8 37 70.3
Atru.chr11.1438 Acer truncatum HOM05D001046 ORTHO05D005883 3.5e-06 55.5 37 73.0
Atru.chr11.1468 Acer truncatum HOM05D001046 ORTHO05D005883 3.5e-06 55.5 37 73.0
BcaB03g14057 Brassica carinata HOM05D001046 ORTHO05D005883 3.5e-06 55.5 40 67.5
MSTRG.7703 Avicennia marina HOM05D001046 ORTHO05D005883 4.6e-06 55.1 37 70.3
BcaC06g35168 Brassica carinata HOM05D001046 ORTHO05D005883 4.6e-06 55.1 40 67.5
A07p12760 Brassica napus HOM05D001046 ORTHO05D005883 4.6e-06 55.1 40 67.5
C07p19150 Brassica napus HOM05D001046 ORTHO05D005883 4.6e-06 55.1 40 67.5
AUR62002966 Chenopodium quinoa HOM05D001046 ORTHO05D005883 4.6e-06 55.1 37 73.0
Migut.L01124 Erythranthe guttata HOM05D001046 ORTHO05D005883 4.6e-06 55.1 37 70.3
SGA_v2.0_scaffold16G07861 Striga asiatica HOM05D001046 ORTHO05D005883 4.6e-06 55.1 37 75.7
AUR62007774 Chenopodium quinoa HOM05D001046 ORTHO05D005883 6.0e-06 54.7 37 70.3
PGR102G1932 Punica granatum HOM05D001046 ORTHO05D005883 6.0e-06 54.7 36 72.2
Thhalv10006742m.g Eutrema salsugineum HOM05D001046 ORTHO05D005883 7.9e-06 54.3 40 65.0


User provided reference genes

Program Settings