Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0007861 Lotus japonicus HOM05D005400 ORTHO05D006668 0.0e+00 2274.6 1268 100.0
Glyma.20G164400 Glycine max HOM05D005400 ORTHO05D006668 0.0e+00 1663.3 1276 74.7
Glyma.10G227900 Glycine max HOM05D005400 ORTHO05D006668 0.0e+00 1631.7 1276 73.5
Phvul.007G077600 Phaseolus vulgaris HOM05D005400 ORTHO05D006668 0.0e+00 1593.6 1279 69.3
Lalb_Chr06g0161421 Lupinus albus HOM05D005400 ORTHO05D006668 0.0e+00 1589.3 1282 71.8
TPR.G7748 Trifolium pratense HOM05D005400 ORTHO05D006668 0.0e+00 1529.6 1325 67.9
arahy.Tifrunner.gnm1.ann1.E9FCC2 Arachis hypogaea HOM05D005400 ORTHO05D006668 0.0e+00 1528.8 1314 64.4
Medtr1g099370 Medicago truncatula HOM05D005400 ORTHO05D006668 0.0e+00 1527.7 1356 67.4
VMungo0720G2624 Vigna mungo HOM05D005400 ORTHO05D006668 0.0e+00 1519.6 1315 70.6
Psat6g194880 Pisum sativum HOM05D005400 ORTHO05D006668 0.0e+00 1504.6 1262 66.0
arahy.Tifrunner.gnm1.ann1.B3EP0P Arachis hypogaea HOM05D005400 ORTHO05D006668 0.0e+00 1451.8 1427 61.5
Ca_10700_v3 Cicer arietinum L. HOM05D005400 ORTHO05D006668 0.0e+00 1256.9 1300 58.0
QL09p011755 Quercus lobata HOM05D005400 ORTHO05D006668 0.0e+00 1234.9 1124 61.0
MD01G1212700 Malus domestica HOM05D005400 ORTHO05D006668 0.0e+00 1205.7 1282 54.7
Cfa016337 Carpinus fangiana HOM05D005400 ORTHO05D006668 0.0e+00 1198.0 1113 62.6
GSVIVG01028757001 Vitis vinifera HOM05D005400 ORTHO05D006668 0.0e+00 1177.2 1145 57.4
FvH4_7g30740 Fragaria vesca HOM05D005400 ORTHO05D006668 0.0e+00 1166.8 1283 54.4
RcHm_v2.0_Chr1g0379691 Rosa chinensis HOM05D005400 ORTHO05D006668 0.0e+00 1162.1 1279 54.3
FAN06G5036 Fragaria x ananassa HOM05D005400 ORTHO05D006668 0.0e+00 1157.5 1283 54.3
Ciclev10004177m.g Citrus clementina HOM05D005400 ORTHO05D006668 0.0e+00 1155.6 1281 52.8
FAN06G4050 Fragaria x ananassa HOM05D005400 ORTHO05D006668 0.0e+00 1152.5 1283 54.0
Thecc.03G189100 Theobroma cacao HOM05D005400 ORTHO05D006668 0.0e+00 1144.4 1279 51.4
Eucgr.A02677 Eucalyptus grandis HOM05D005400 ORTHO05D006668 0.0e+00 1137.9 1149 56.1
Sabra15G0021300 Salix brachista HOM05D005400 ORTHO05D006668 0.0e+00 1134.8 1315 50.8
Actinidia34175 Actinidia chinensis HOM05D005400 ORTHO05D006668 0.0e+00 1131.3 1295 52.4
Sabra15G0018800 Salix brachista HOM05D005400 ORTHO05D006668 0.0e+00 1127.1 1143 55.8
TWI14G1289 Tripterygium wilfordii HOM05D005400 ORTHO05D006668 0.0e+00 1124.0 1144 55.2
Potri.015G024300 Populus trichocarpa HOM05D005400 ORTHO05D006668 0.0e+00 1114.8 1327 52.8
Gohir.D12G254600 Gossypium hirsutum HOM05D005400 ORTHO05D006668 0.0e+00 1110.1 1275 51.1
Manes.06G155000 Manihot esculenta HOM05D005400 ORTHO05D006668 0.0e+00 1109.7 1310 49.9
Gorai.008G272300 Gossypium raimondii HOM05D005400 ORTHO05D006668 0.0e+00 1109.4 1275 52.9
CANSAT21G0517 Cannabis sativa HOM05D005400 ORTHO05D006668 0.0e+00 1104.0 1296 51.3
FAN03G3290 Fragaria x ananassa HOM05D005400 ORTHO05D006668 0.0e+00 1097.0 1110 58.0
CiPaw.05G259500 Carya illinoinensis HOM05D005400 ORTHO05D006668 0.0e+00 1096.3 971 60.5
ClCG01G000730 Citrullus lanatus HOM05D005400 ORTHO05D006668 0.0e+00 1091.6 1114 55.7
TAR374G0725 Trochodendron aralioides HOM05D005400 ORTHO05D006668 0.0e+00 1084.3 1327 49.3
vmacro06593 Vaccinium macrocarpon HOM05D005400 ORTHO05D006668 0.0e+00 1083.2 1321 49.7
CsaV3_5G000860 Cucumis sativus L. HOM05D005400 ORTHO05D006668 0.0e+00 1080.5 1133 57.4
MELO3C005855.2 Cucumis melo HOM05D005400 ORTHO05D006668 0.0e+00 1080.1 1144 57.1
Dinv35292 Davidia involucrata HOM05D005400 ORTHO05D006668 0.0e+00 1080.1 1302 50.3
Prupe.2G304900 Prunus persica HOM05D005400 ORTHO05D006668 5.6e-309 1064.7 1200 54.8
PGR042G3191 Punica granatum HOM05D005400 ORTHO05D006668 9.5e-309 1063.9 1285 49.8
Nn1g01753 Nelumbo nucifera HOM05D005400 ORTHO05D006668 3.0e-307 1058.9 1298 50.2
Sed0025455 Sechium edule HOM05D005400 ORTHO05D006668 5.2e-307 1058.1 1139 56.9
Rhsim03G0196700 Rhododendron simsii HOM05D005400 ORTHO05D006668 9.5e-301 1037.3 1307 48.4
FAN01G1802 Fragaria x ananassa HOM05D005400 ORTHO05D006668 8.0e-300 1034.2 1323 49.0
Cc02_g02120 Coffea canephora HOM05D005400 ORTHO05D006668 1.4e-299 1033.5 1107 54.7
Sc13g0009410 Simmondsia chinensis HOM05D005400 ORTHO05D006668 3.7e-297 1025.4 1308 47.2
MBI06_g29320_MAGBIO Magnolia biondii HOM05D005400 ORTHO05D006668 6.4e-297 1024.6 1234 48.9
MSTRG.27059 Avicennia marina HOM05D005400 ORTHO05D006668 2.7e-295 1019.2 1289 48.2
Duzib205G0693 Durio zibethinus HOM05D005400 ORTHO05D006668 1.3e-294 1016.9 1026 55.8
SalBow4G2614 Salvia bowleyana HOM05D005400 ORTHO05D006668 8.6e-294 1014.2 1156 52.3
THA.LOC104811936 Tarenaya hassleriana HOM05D005400 ORTHO05D006668 1.9e-293 1013.1 1125 51.7
AL8G27410 Arabidopsis lyrata HOM05D005400 ORTHO05D006668 1.8e-291 1006.5 1129 50.8
Cpa.g.sc3.16 Carica papaya HOM05D005400 ORTHO05D006668 3.1e-291 1005.7 1361 46.6
Migut.F00258 Erythranthe guttata HOM05D005400 ORTHO05D006668 4.0e-291 1005.4 1153 51.3
CAN.G108.2 Capsicum annuum HOM05D005400 ORTHO05D006668 1.2e-290 1003.8 1324 47.8
BcaB08g35655 Brassica carinata HOM05D005400 ORTHO05D006668 2.6e-290 1002.7 1285 47.3
AT5G52910 Arabidopsis thaliana HOM05D005400 ORTHO05D006668 5.8e-290 1001.5 1139 50.8
COL.COLO4_30250 Corchorus olitorius HOM05D005400 ORTHO05D006668 5.8e-290 1001.5 1276 48.4
Aa31LG3G9160 Aethionema arabicum HOM05D005400 ORTHO05D006668 2.9e-289 999.2 1082 51.3
Oeu037127.2 Olea europaea HOM05D005400 ORTHO05D006668 2.9e-289 999.2 1369 46.0
Carub.0008s1311 Capsella rubella HOM05D005400 ORTHO05D006668 5.4e-288 995.0 1124 49.9
Thhalv10012488m.g Eutrema salsugineum HOM05D005400 ORTHO05D006668 7.1e-288 994.6 1134 50.6
CSS0023888 Camellia sinensis var. sinensis HOM05D005400 ORTHO05D006668 6.6e-286 988.0 1280 47.3
Haze_00088 Corylus avellana HOM05D005400 ORTHO05D006668 6.6e-286 988.0 1427 47.2
CARHR265900 Cardamine hirsuta HOM05D005400 ORTHO05D006668 1.9e-285 986.5 1281 45.9
Solyc03g007800.3 Solanum lycopersicum HOM05D005400 ORTHO05D006668 1.9e-285 986.5 1354 45.3
PSO170G5128 Papaver somniferum HOM05D005400 ORTHO05D006668 4.0e-283 978.8 1156 49.1
Sopen03g003730 Solanum pennellii HOM05D005400 ORTHO05D006668 3.4e-282 975.7 1350 47.6
Hund04816 Selenicereus undatus HOM05D005400 ORTHO05D006668 5.8e-282 974.9 1303 46.2
BraA10t43124Z Brassica rapa HOM05D005400 ORTHO05D006668 7.6e-282 974.5 1138 49.2
SGA_v2.0_scaffold44G16767 Striga asiatica HOM05D005400 ORTHO05D006668 4.9e-281 971.8 1105 51.7
DCAR_020293 Daucus carota HOM05D005400 ORTHO05D006668 6.4e-281 971.5 1201 49.4
A10p10420 Brassica napus HOM05D005400 ORTHO05D006668 1.4e-280 970.3 1138 48.9
C09p42650 Brassica napus HOM05D005400 ORTHO05D006668 5.4e-280 968.4 1285 45.4
BolC9t57141H Brassica oleracea HOM05D005400 ORTHO05D006668 5.4e-280 968.4 1285 45.4
Sp6g15090 Schrenkiella parvula HOM05D005400 ORTHO05D006668 2.1e-279 966.5 1106 50.4
BcaC04g20520 Brassica carinata HOM05D005400 ORTHO05D006668 3.5e-279 965.7 1285 45.3
Gohir.A12G254700 Gossypium hirsutum HOM05D005400 ORTHO05D006668 3.3e-277 959.1 1182 52.1
ECA246G1245 Erigeron canadensis HOM05D005400 ORTHO05D006668 3.8e-273 945.7 1321 43.8
Peaxi162Scf00904g00467 Petunia axillaris HOM05D005400 ORTHO05D006668 6.0e-271 938.3 1357 43.5
Atru.BG.163.p Acer truncatum HOM05D005400 ORTHO05D006668 5.1e-270 935.3 958 53.8
EL10Ac3g05372 Beta vulgaris HOM05D005400 ORTHO05D006668 2.1e-268 929.9 1356 44.9
Hma1.2p1_0142F.1_g064190 Hydrangea macrophylla HOM05D005400 ORTHO05D006668 4.8e-268 928.7 969 54.2
HanXRQChr05g0158761 Helianthus annuus HOM05D005400 ORTHO05D006668 1.5e-266 923.7 1158 47.4
Nitab4.5_0002340g0020 Nicotiana tabacum HOM05D005400 ORTHO05D006668 3.4e-266 922.5 1352 44.1
Aqoxy5G04046 Aquilegia oxysepala HOM05D005400 ORTHO05D006668 2.1e-263 913.3 1290 44.9
CSS0002454 Camellia sinensis var. sinensis HOM05D005400 ORTHO05D006668 1.1e-261 907.5 1010 52.6
Lsat_1_v5_gn_5_37621 Lactuca sativa HOM05D005400 ORTHO05D006668 2.2e-257 893.3 1134 47.3
Lj3C915G3 Lonicera japonica HOM05D005400 ORTHO05D006668 2.4e-235 820.1 1013 49.6
AUR62031458 Chenopodium quinoa HOM05D005400 ORTHO05D006668 6.5e-233 812.0 1174 45.0
Zm00001eb296310 Zea mays HOM05D005400 ORTHO05D006668 8.5e-233 811.6 1049 47.4
Os05g0210500 Oryza sativa ssp. japonica HOM05D005400 ORTHO05D006668 1.6e-231 807.4 992 48.0
AUR62021073 Chenopodium quinoa HOM05D005400 ORTHO05D006668 2.9e-225 786.6 1195 43.4
ATR0721G161 Amborella trichopoda HOM05D005400 ORTHO05D006668 1.1e-224 784.6 1163 41.7
SEGI_11166 Sequoiadendron giganteum HOM05D005400 ORTHO05D006668 2.9e-217 760.0 1183 39.6
Ah.07g206200 Amaranthus hybridus HOM05D005400 ORTHO05D006668 5.2e-214 749.2 1279 39.8
Atru.chr1.311 Acer truncatum HOM05D005400 ORTHO05D006668 2.2e-204 717.2 525 68.0
Nitab4.5_0001748g0020 Nicotiana tabacum HOM05D005400 ORTHO05D006668 3.5e-202 709.9 978 44.5
Hma1.2p1_0142F.1_g064180 Hydrangea macrophylla HOM05D005400 ORTHO05D006668 1.6e-199 701.0 538 66.4
unitig_46.g18810 Utricularia gibba HOM05D005400 ORTHO05D006668 3.1e-195 686.8 1095 42.2
SHI13742 Sapria himalayana HOM05D005400 ORTHO05D006668 8.0e-191 672.2 970 44.3
CDE03G0155 Ceratophyllum demersum HOM05D005400 ORTHO05D006668 9.2e-187 658.7 1117 39.8
PGSC0003DMG400006589 Solanum tuberosum HOM05D005400 ORTHO05D006668 3.0e-185 653.7 534 62.4
AagrBONN_evm.TU.Sc2ySwM_362.1589 Anthoceros agrestis HOM05D005400 ORTHO05D006668 4.1e-171 606.7 978 38.3
Mapoly0089s0007 Marchantia polymorpha HOM05D005400 ORTHO05D006668 1.6e-151 541.6 1095 34.3
Pp3c8_21590 Physcomitrium patens HOM05D005400 ORTHO05D006668 5.3e-150 536.6 1217 33.0
HPP92_007648 Vanilla planifolia HOM05D005400 ORTHO05D006668 5.8e-133 479.9 545 47.9
SMO353G0144 Selaginella moellendorffii HOM05D005400 ORTHO05D006668 8.2e-103 379.8 999 29.7
PGSC0003DMG400006588 Solanum tuberosum HOM05D005400 ORTHO05D006668 1.3e-100 372.5 644 44.9
FAN10G3192 Fragaria x ananassa HOM05D005400 ORTHO05D006668 1.8e-86 325.5 244 66.4
QL09p011899 Quercus lobata HOM05D005400 ORTHO05D006668 2.2e-71 275.4 284 55.3
RcHm_v2.0_Chr5g0072581 Rosa chinensis HOM05D005400 ORTHO05D006668 1.0e-60 240.0 178 70.8
CBR_g32347 Chara braunii HOM05D000019 ORTHO05D000353 1.5e-51 209.5 251 44.6
GSVIVG01028763001 Vitis vinifera HOM05D005400 ORTHO05D006668 1.3e-47 196.4 171 61.4
Lj3C915T0 Lonicera japonica HOM05D005400 ORTHO05D006668 5.6e-43 181.0 135 66.7
PRCOL_00002573 Prasinoderma coloniale HOM05D005400 ORTHO05D006668 1.1e-38 166.8 584 27.2
arahy.Tifrunner.gnm1.ann1.FE5R37 Arachis hypogaea HOM05D005400 ORTHO05D006668 2.8e-34 152.1 98 73.5
CDE04G2330 Ceratophyllum demersum HOM05D005400 ORTHO05D006668 9.0e-33 147.1 105 63.8
Glyma.14G176200 Glycine max HOM05D005400 ORTHO05D006668 9.0e-33 147.1 150 58.0
arahy.Tifrunner.gnm1.ann1.3F6PU2 Arachis hypogaea HOM05D005400 ORTHO05D006668 3.2e-30 138.7 92 73.9
Cre06.g284850 Chlamydomonas reinhardtii HOM05D005400 ORTHO05D006668 2.7e-29 135.6 240 35.4
SHI13743 Sapria himalayana HOM05D005400 ORTHO05D006668 6.0e-29 134.4 84 73.8
Glyma.10G228400 Glycine max HOM05D005400 ORTHO05D006668 3.9e-28 131.7 236 48.3
QL09p011903 Quercus lobata HOM05D005400 ORTHO05D006668 3.7e-26 125.2 137 52.6
Glyma.03G109600 Glycine max HOM05D005400 ORTHO05D006668 1.7e-23 116.3 72 76.4
GSVIVG01028765001 Vitis vinifera HOM05D005400 ORTHO05D006668 8.4e-23 114.0 118 52.5
FAN06G3414 Fragaria x ananassa HOM05D005400 ORTHO05D006668 3.0e-20 105.5 120 46.7
FAN06G1858 Fragaria x ananassa HOM05D005400 ORTHO05D006668 1.9e-19 102.8 125 45.6
arahy.Tifrunner.gnm1.ann1.58WBAP Arachis hypogaea HOM05D005400 ORTHO05D006668 2.5e-19 102.4 114 49.1
Lsat_1_v5_gn_8_88601 Lactuca sativa HOM05D005400 ORTHO05D006668 4.0e-17 95.1 73 61.6
Dinv07570 Davidia involucrata HOM05D000001 ORTHO05D000003 2.1e-13 82.8 102 50.0
SHI13741 Sapria himalayana HOM05D005400 ORTHO05D006668 1.3e-12 80.1 71 53.5
VMungo0464G0969 Vigna mungo HOM05D005400 ORTHO05D006668 1.3e-10 73.6 88 48.9
SMO171G0132 Selaginella moellendorffii HOM05D005400 ORTHO05D006668 2.2e-10 72.8 89 43.8
Glyma.03G109700 Glycine max HOM05D003586 ORTHO05D004036 2.8e-10 72.4 40 82.5
FAN08G2853 Fragaria x ananassa HOM05D010729 ORTHO05D011897 9.0e-09 67.4 54 59.3
GSVIVG01028761001 Vitis vinifera HOM05D005400 ORTHO05D006668 2.0e-08 66.2 448 25.9
FvH4_7g30961 Fragaria vesca HOM05D005400 ORTHO05D011897 1.4e-06 60.1 53 50.9
CBR_g32345 Chara braunii HOM05D000019 ORTHO05D134202 4.2e-06 58.5 196 28.1


User provided reference genes

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