Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0007792 Lotus japonicus HOM05D008821 ORTHO05D010464 2.3e-72 275.4 136 100.0
Lj4g0018254 Lotus japonicus HOM05D008821 ORTHO05D010464 5.4e-69 264.2 136 96.3
Glyma.05G142600 Glycine max HOM05D008821 ORTHO05D010464 2.7e-44 182.2 141 70.9
Glyma.08G098600 Glycine max HOM05D008821 ORTHO05D010464 1.8e-43 179.5 141 68.8
TPR.G9571 Trifolium pratense HOM05D008821 ORTHO05D010464 4.0e-40 168.3 137 66.4
Psat7g081560 Pisum sativum HOM05D008821 ORTHO05D010464 5.5e-37 157.9 133 64.7
Medtr5g077560 Medicago truncatula HOM05D008821 ORTHO05D010464 7.1e-37 157.5 144 64.6
Phvul.002G180600 Phaseolus vulgaris HOM05D008821 ORTHO05D010464 2.7e-36 155.6 136 64.7
Lalb_Chr12g0196061 Lupinus albus HOM05D008821 ORTHO05D010464 4.0e-32 141.7 130 59.2
TAR460G0006 Trochodendron aralioides HOM05D008821 ORTHO05D010464 3.7e-25 118.6 135 47.4
arahy.Tifrunner.gnm1.ann1.SDZ0GZ Arachis hypogaea HOM05D008821 ORTHO05D010464 2.0e-23 112.8 128 51.6
Nn4g26609 Nelumbo nucifera HOM05D008821 ORTHO05D010464 4.5e-23 111.7 140 43.6
arahy.Tifrunner.gnm1.ann1.ZX7BQ2 Arachis hypogaea HOM05D000116 ORTHO05D010464 3.8e-22 108.6 152 48.7
Manes.15G123932 Manihot esculenta HOM05D008821 ORTHO05D010464 3.8e-22 108.6 130 46.2
Thecc.06G147000 Theobroma cacao HOM05D008821 ORTHO05D010464 8.5e-22 107.5 135 45.9
CiPaw.09G121300 Carya illinoinensis HOM05D008821 ORTHO05D010464 1.1e-21 107.1 133 46.6
ClCG01G024780 Citrullus lanatus HOM05D008821 ORTHO05D010464 1.9e-21 106.3 112 54.5
MELO3C007119.2 Cucumis melo HOM05D008821 ORTHO05D010464 2.7e-20 102.4 112 53.6
CsaV3_6G051900 Cucumis sativus L. HOM05D000116 ORTHO05D010464 4.6e-20 101.7 111 54.1
MBI18_g11239_MAGBIO Magnolia biondii HOM05D008821 ORTHO05D010464 1.8e-19 99.8 93 54.8
RcHm_v2.0_Chr5g0014511 Rosa chinensis HOM05D008821 ORTHO05D010464 3.9e-19 98.6 146 44.5
FAN21G0539 Fragaria x ananassa HOM05D008821 ORTHO05D010464 4.3e-18 95.1 143 44.1
FvH4_3g05210 Fragaria vesca HOM05D008821 ORTHO05D010464 7.4e-18 94.4 143 44.1
FAN16G2928 Fragaria x ananassa HOM05D008821 ORTHO05D010464 2.2e-17 92.8 145 43.4
PSO541G6549 Papaver somniferum HOM05D008821 ORTHO05D010464 3.7e-17 92.0 140 40.7
FAN16G1747 Fragaria x ananassa HOM05D008821 ORTHO05D010464 4.8e-17 91.7 143 43.4
Prupe.4G083800 Prunus persica HOM05D008821 ORTHO05D010464 4.1e-16 88.6 156 39.1
Aqoxy1G01677 Aquilegia oxysepala HOM05D008821 ORTHO05D010464 6.9e-16 87.8 125 42.4
Dinv32224 Davidia involucrata HOM05D000116 ORTHO05D000133 1.5e-15 86.7 111 44.1
Gohir.D06G143700 Gossypium hirsutum HOM05D008821 ORTHO05D010464 2.6e-15 85.9 119 42.9
Gorai.010G167500 Gossypium raimondii HOM05D008821 ORTHO05D010464 4.5e-15 85.1 119 42.9
Oeu007936.1 Olea europaea HOM05D008821 ORTHO05D010464 7.7e-15 84.3 119 44.5
Atru.chr10.1160 Acer truncatum HOM05D008821 ORTHO05D010464 2.2e-14 82.8 112 46.4
Oeu007934.1 Olea europaea HOM05D008821 ORTHO05D010464 2.2e-14 82.8 119 44.5
Gohir.A06G139000 Gossypium hirsutum HOM05D008821 ORTHO05D010464 6.5e-14 81.3 119 41.2
Sc24g0001660 Simmondsia chinensis HOM05D008821 ORTHO05D010464 6.5e-14 81.3 119 37.8
Haze_05636 Corylus avellana HOM05D008821 ORTHO05D010464 3.2e-13 79.0 77 51.9
CSS0030437 Camellia sinensis var. sinensis HOM05D008821 ORTHO05D010464 1.6e-12 76.6 119 37.8
Cfa000919 Carpinus fangiana HOM05D008821 ORTHO05D010464 2.1e-12 76.3 76 51.3
Sed0011418 Sechium edule HOM05D008821 ORTHO05D010464 3.6e-12 75.5 116 40.5
AL7G35960 Arabidopsis lyrata HOM05D010864 ORTHO05D010464 4.1e-08 62.0 99 41.4
ATR1098G131 Amborella trichopoda HOM05D008821 ORTHO05D010464 5.3e-08 61.6 68 50.0
Carub.0007s2287 Capsella rubella HOM05D010864 ORTHO05D010464 5.3e-08 61.6 99 40.4
C03p81130 Brassica napus HOM05D010864 ORTHO05D010464 9.1e-08 60.8 114 36.8
AT4G18395 Arabidopsis thaliana HOM05D010864 ORTHO05D010464 1.2e-07 60.5 99 40.4
BolC3t20381H Brassica oleracea HOM05D010864 ORTHO05D010464 2.6e-07 59.3 116 36.2
CARHR225210 Cardamine hirsuta HOM05D010864 ORTHO05D010464 3.4e-07 58.9 100 40.0
MBI02_g21430_MAGBIO Magnolia biondii HOM05D008821 ORTHO05D010464 4.5e-07 58.5 82 41.5
BcaB04g18472 Brassica carinata HOM05D010864 ORTHO05D010464 5.9e-07 58.2 116 36.2
BcaC01g00536 Brassica carinata HOM05D010864 ORTHO05D010464 7.7e-07 57.8 100 41.0
Thhalv10027014m.g Eutrema salsugineum HOM05D010864 ORTHO05D010464 7.7e-07 57.8 116 33.6
A08p13730 Brassica napus HOM05D010864 ORTHO05D010464 1.0e-06 57.4 116 35.3
BraA08t33355Z Brassica rapa HOM05D010864 ORTHO05D010464 1.0e-06 57.4 114 36.0
Sp7g15640 Schrenkiella parvula HOM05D010864 ORTHO05D010464 2.2e-06 56.2 101 39.6
Aa31LG6G1120 Aethionema arabicum HOM05D010864 ORTHO05D010464 2.9e-06 55.8 100 42.0
THA.LOC104812865 Tarenaya hassleriana HOM05D010864 ORTHO05D010464 2.9e-06 55.8 112 33.9


User provided reference genes

Program Settings