Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0007526 Lotus japonicus HOM05D003722 ORTHO05D004589 0.0e+00 1371.3 1017 100.0
arahy.Tifrunner.gnm1.ann1.JX1TK4 Arachis hypogaea HOM05D003722 ORTHO05D004589 3.5e-290 1001.9 923 84.4
Glyma.14G098900 Glycine max HOM05D003722 ORTHO05D004589 2.3e-289 999.2 932 84.4
Medtr1g015450 Medicago truncatula HOM05D003722 ORTHO05D004589 3.1e-286 988.8 932 80.9
Ca_13110_v3 Cicer arietinum L. HOM05D003722 ORTHO05D004589 1.9e-283 979.5 919 83.2
TPR.G38933 Trifolium pratense HOM05D003722 ORTHO05D004589 2.7e-274 949.1 973 76.9
Lalb_Chr22g0356231 Lupinus albus HOM05D003722 ORTHO05D004589 3.6e-274 948.7 896 83.9
VMungo0647G1341 Vigna mungo HOM05D003722 ORTHO05D004589 3.6e-274 948.7 924 82.0
arahy.Tifrunner.gnm1.ann1.G8USHK Arachis hypogaea HOM05D003722 ORTHO05D004589 8.2e-271 937.6 879 84.5
Glyma.17G225800 Glycine max HOM05D003722 ORTHO05D004589 4.5e-269 931.8 820 89.4
Phvul.001G038700 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 2.0e-264 916.4 922 80.3
Phvul.009G081900 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 1.3e-255 887.1 909 78.5
Glyma.06G055800 Glycine max HOM05D003722 ORTHO05D004589 1.0e-241 840.9 907 74.9
Glyma.04G055700 Glycine max HOM05D003722 ORTHO05D004589 2.0e-240 836.6 906 75.5
Prupe.1G404200 Prunus persica HOM05D003722 ORTHO05D004589 2.6e-240 836.3 918 72.4
VMungo1309G1038 Vigna mungo HOM05D003722 ORTHO05D004589 2.9e-236 822.8 896 76.0
MD15G1049900 Malus domestica HOM05D003722 ORTHO05D004589 2.0e-232 810.1 918 73.3
Potri.018G048700 Populus trichocarpa HOM05D003722 ORTHO05D004589 2.9e-231 806.2 913 70.9
QL02p017002 Quercus lobata HOM05D003722 ORTHO05D004589 1.9e-230 803.5 915 75.1
Manes.16G085600 Manihot esculenta HOM05D003722 ORTHO05D004589 9.2e-230 801.2 923 73.8
Haze_18293 Corylus avellana HOM05D003722 ORTHO05D004589 1.2e-229 800.8 937 72.8
Sabra18G0046400 Salix brachista HOM05D003722 ORTHO05D004589 4.6e-229 798.9 923 69.9
Potri.006G220900 Populus trichocarpa HOM05D003722 ORTHO05D004589 1.0e-228 797.7 917 74.5
MD08G1071300 Malus domestica HOM05D003722 ORTHO05D004589 6.6e-228 795.0 921 74.0
FvH4_2g30970 Fragaria vesca HOM05D003722 ORTHO05D004589 5.6e-227 792.0 916 74.7
FAN24G1820 Fragaria x ananassa HOM05D003722 ORTHO05D004589 9.5e-227 791.2 916 74.7
Lalb_Chr23g0267971 Lupinus albus HOM05D003722 ORTHO05D004589 3.1e-225 786.2 910 66.3
arahy.Tifrunner.gnm1.ann1.V7LPDI Arachis hypogaea HOM05D003722 ORTHO05D004589 5.2e-225 785.4 856 75.8
TAR624G1180 Trochodendron aralioides HOM05D003722 ORTHO05D004589 5.8e-224 781.9 899 72.7
GSVIVG01035469001 Vitis vinifera HOM05D003722 ORTHO05D004589 5.8e-224 781.9 913 69.9
Gohir.D07G019500 Gossypium hirsutum HOM05D003722 ORTHO05D004589 1.7e-223 780.4 916 73.1
Lalb_Chr08g0244821 Lupinus albus HOM05D003722 ORTHO05D004589 1.7e-223 780.4 916 70.6
TWI32G0253 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 4.9e-223 778.9 914 71.8
Manes.03G053433 Manihot esculenta HOM05D003722 ORTHO05D004589 8.3e-223 778.1 918 72.9
arahy.Tifrunner.gnm1.ann1.V9GZ7C Arachis hypogaea HOM05D003722 ORTHO05D004589 1.2e-221 774.2 856 77.7
Gohir.A07G019700 Gossypium hirsutum HOM05D003722 ORTHO05D004589 7.8e-221 771.5 916 72.6
FAN27G2597 Fragaria x ananassa HOM05D003722 ORTHO05D004589 1.3e-220 770.8 927 63.8
RcHm_v2.0_Chr6g0311801 Rosa chinensis HOM05D003722 ORTHO05D004589 1.3e-220 770.8 918 68.1
TAR636G3697 Trochodendron aralioides HOM05D003722 ORTHO05D004589 2.5e-219 766.5 899 66.0
Ciclev10007327m.g Citrus clementina HOM05D003722 ORTHO05D004589 7.3e-219 765.0 916 74.5
Gorai.001G020200 Gossypium raimondii HOM05D003722 ORTHO05D004589 1.2e-218 764.2 914 72.2
Thecc.09G063300 Theobroma cacao HOM05D003722 ORTHO05D004589 2.1e-218 763.5 912 73.4
Dinv02138 Davidia involucrata HOM05D003722 ORTHO05D004589 1.4e-217 760.8 949 64.6
COL.COLO4_21138 Corchorus olitorius HOM05D003722 ORTHO05D004589 8.9e-217 758.1 915 72.7
Sabra06G0170700 Salix brachista HOM05D003722 ORTHO05D004589 8.9e-217 758.1 980 66.7
Dinv41842 Davidia involucrata HOM05D003722 ORTHO05D004589 1.5e-216 757.3 918 72.5
Eucgr.C03158 Eucalyptus grandis HOM05D003722 ORTHO05D004589 4.4e-216 755.7 897 73.7
CsaV3_4G036040 Cucumis sativus L. HOM05D003722 ORTHO05D004589 5.8e-216 755.4 921 72.0
Nitab4.5_0000446g0200 Nicotiana tabacum HOM05D003722 ORTHO05D004589 5.8e-216 755.4 817 70.7
TAR626G0360 Trochodendron aralioides HOM05D003722 ORTHO05D004589 1.7e-215 753.8 932 72.0
Duzib187G0791 Durio zibethinus HOM05D003722 ORTHO05D004589 3.7e-215 752.7 915 72.3
Hma1.2p1_0836F.1_g225970 Hydrangea macrophylla HOM05D003722 ORTHO05D004589 4.9e-215 752.3 910 72.9
TAR626G0824 Trochodendron aralioides HOM05D003722 ORTHO05D004589 8.3e-215 751.5 933 71.6
FAN20G0071 Fragaria x ananassa HOM05D003722 ORTHO05D004589 1.1e-214 751.1 916 72.9
Nn6g35614 Nelumbo nucifera HOM05D003722 ORTHO05D004589 1.2e-213 747.7 899 73.3
TWI34G0168 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 3.5e-213 746.1 912 71.5
Medtr1g015480 Medicago truncatula HOM05D003722 ORTHO05D004589 6.0e-213 745.3 792 75.1
CSS0013734 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 1.7e-212 743.8 917 71.6
Psat6g022880 Pisum sativum HOM05D003722 ORTHO05D004589 1.7e-212 743.8 926 65.1
ClCG05G015740 Citrullus lanatus HOM05D003722 ORTHO05D004589 2.1e-210 736.9 919 72.0
Nn8g38669 Nelumbo nucifera HOM05D003722 ORTHO05D004589 8.1e-210 734.9 920 73.4
Sc23g0004200 Simmondsia chinensis HOM05D003722 ORTHO05D004589 3.1e-209 733.0 812 75.6
CiPaw.15G091900 Carya illinoinensis HOM05D003722 ORTHO05D004589 5.2e-209 732.3 914 66.0
Oeu036060.1 Olea europaea HOM05D003722 ORTHO05D004589 5.4e-206 722.2 817 72.7
CANSAT25G1471 Cannabis sativa HOM05D003722 ORTHO05D004589 1.2e-205 721.1 899 71.5
Aqoxy7G04082 Aquilegia oxysepala HOM05D003722 ORTHO05D004589 1.7e-204 717.2 935 69.1
HanXRQChr09g0261801 Helianthus annuus HOM05D003722 ORTHO05D004589 2.3e-204 716.8 821 65.3
Nitab4.5_0002831g0060 Nicotiana tabacum HOM05D003722 ORTHO05D004589 3.9e-204 716.1 819 71.3
Rhsim03G0063100 Rhododendron simsii HOM05D003722 ORTHO05D004589 3.9e-204 716.1 919 69.9
PGR044G0665 Punica granatum HOM05D003722 ORTHO05D004589 1.5e-203 714.1 941 69.4
CSS0048906 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 1.9e-203 713.8 820 74.8
Peaxi162Scf00486g01029 Petunia axillaris HOM05D003722 ORTHO05D004589 7.3e-203 711.8 819 70.3
MBI19_g11832_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 8.1e-202 708.4 913 70.4
Migut.E01781 Erythranthe guttata HOM05D003722 ORTHO05D004589 6.9e-201 705.3 822 74.1
Duzib168G1968 Durio zibethinus HOM05D003722 ORTHO05D004589 9.0e-201 704.9 917 65.1
DCAR_004379 Daucus carota HOM05D003722 ORTHO05D004589 2.0e-200 703.7 914 69.4
Sed0027838 Sechium edule HOM05D003722 ORTHO05D004589 7.6e-200 701.8 819 76.9
PGSC0003DMG400018806 Solanum tuberosum HOM05D003722 ORTHO05D004589 1.3e-199 701.0 819 70.8
Lsat_1_v5_gn_8_70661 Lactuca sativa HOM05D003722 ORTHO05D004589 1.7e-199 700.7 813 71.0
Solyc08g061820.3 Solanum lycopersicum HOM05D003722 ORTHO05D004589 6.4e-199 698.7 819 68.9
PSO724G0454 Papaver somniferum HOM05D003722 ORTHO05D004589 2.4e-198 696.8 880 70.5
Sopen08g017250 Solanum pennellii HOM05D003722 ORTHO05D004589 4.2e-198 696.0 819 68.7
PSO135G0299 Papaver somniferum HOM05D003722 ORTHO05D004589 3.5e-197 693.0 907 68.9
AT4G33210 Arabidopsis thaliana HOM05D003722 ORTHO05D004589 5.1e-196 689.1 910 68.0
vmacro07490 Vaccinium macrocarpon HOM05D003722 ORTHO05D004589 5.6e-195 685.6 817 70.4
Sp7g30950 Schrenkiella parvula HOM05D003722 ORTHO05D004589 9.6e-195 684.9 912 68.9
ATR0598G202 Amborella trichopoda HOM05D003722 ORTHO05D004589 2.1e-194 683.7 878 69.9
BraA03t15228Z Brassica rapa HOM05D003722 ORTHO05D004589 4.8e-194 682.6 916 67.5
DCAR_001223 Daucus carota HOM05D003722 ORTHO05D004589 1.8e-193 680.6 907 69.5
MSTRG.25985 Avicennia marina HOM05D003722 ORTHO05D004589 9.0e-193 678.3 852 70.7
BcaNung02160 Brassica carinata HOM05D003722 ORTHO05D004589 2.0e-192 677.2 914 68.4
ECA236G0039 Erigeron canadensis HOM05D003722 ORTHO05D004589 2.0e-192 677.2 819 72.3
Migut.A00079 Erythranthe guttata HOM05D003722 ORTHO05D004589 2.0e-192 677.2 819 74.1
CAN.G881.1 Capsicum annuum HOM05D003722 ORTHO05D004589 5.8e-192 675.6 780 70.8
BolC7t46400H Brassica oleracea HOM05D003722 ORTHO05D004589 1.4e-190 671.0 910 68.4
Atru.chr7.1848 Acer truncatum HOM05D003722 ORTHO05D004589 2.4e-190 670.2 774 73.9
Gohir.D06G083100 Gossypium hirsutum HOM05D003722 ORTHO05D004589 2.4e-190 670.2 888 67.8
EL10Ac2g03782 Beta vulgaris HOM05D003722 ORTHO05D004589 7.9e-189 665.2 931 62.5
Actinidia27552 Actinidia chinensis HOM05D003722 ORTHO05D004589 3.9e-188 662.9 914 65.6
Lj7A221G29 Lonicera japonica HOM05D003722 ORTHO05D004589 3.9e-188 662.9 809 64.5
BraA01t00479Z Brassica rapa HOM05D003722 ORTHO05D004589 6.7e-188 662.1 906 68.1
BolC1t00522H Brassica oleracea HOM05D003722 ORTHO05D004589 8.7e-188 661.8 909 68.2
Carub.0007s0725 Capsella rubella HOM05D003722 ORTHO05D004589 8.7e-188 661.8 908 67.3
A01p04970 Brassica napus HOM05D003722 ORTHO05D004589 1.1e-187 661.4 906 68.1
C01p05420 Brassica napus HOM05D003722 ORTHO05D004589 1.5e-187 661.0 906 68.2
HanXRQChr03g0065591 Helianthus annuus HOM05D003722 ORTHO05D004589 9.6e-187 658.3 830 72.3
CARHR241240 Cardamine hirsuta HOM05D003722 ORTHO05D004589 4.8e-186 656.0 911 67.1
SalBow4G2891 Salvia bowleyana HOM05D003722 ORTHO05D004589 4.0e-185 652.9 889 66.8
Sed0000287 Sechium edule HOM05D003722 ORTHO05D004589 4.0e-185 652.9 834 68.3
AL7G18350 Arabidopsis lyrata HOM05D003722 ORTHO05D004589 6.9e-185 652.1 910 67.6
BcaC09g52132 Brassica carinata HOM05D003722 ORTHO05D004589 5.8e-184 649.0 917 67.5
HanXRQChr05g0135941 Helianthus annuus HOM05D003722 ORTHO05D004589 5.8e-184 649.0 913 60.4
THA.LOC104803705 Tarenaya hassleriana HOM05D003722 ORTHO05D004589 1.7e-183 647.5 909 63.9
AUR62009080 Chenopodium quinoa HOM05D003722 ORTHO05D004589 3.2e-182 643.3 827 66.5
Thhalv10024312m.g Eutrema salsugineum HOM05D003722 ORTHO05D004589 1.0e-180 638.3 942 65.2
SGA_v2.0_scaffold163G37999 Striga asiatica HOM05D003722 ORTHO05D004589 2.5e-179 633.6 814 71.7
Aa31sc290G30 Aethionema arabicum HOM05D003722 ORTHO05D004589 7.4e-179 632.1 914 65.3
AUR62020586 Chenopodium quinoa HOM05D003722 ORTHO05D004589 1.3e-178 631.3 893 65.4
SGA_v2.0_scaffold64G21877 Striga asiatica HOM05D003722 ORTHO05D004589 1.3e-178 631.3 808 71.4
MELO3C016912.2 Cucumis melo HOM05D003722 ORTHO05D004589 3.7e-178 629.8 875 56.9
Gorai.010G096600 Gossypium raimondii HOM05D003722 ORTHO05D004589 4.6e-173 612.8 845 60.0
CiPaw.16G068500 Carya illinoinensis HOM05D003722 ORTHO05D004589 1.7e-167 594.3 743 73.8
C03p86790 Brassica napus HOM05D003722 ORTHO05D004589 3.8e-167 593.2 805 63.5
BcaC01g01002 Brassica carinata HOM05D003722 ORTHO05D004589 1.2e-165 588.2 805 63.1
BolC3t20973H Brassica oleracea HOM05D003722 ORTHO05D004589 1.2e-165 588.2 805 63.1
BraA08t33724Z Brassica rapa HOM05D003722 ORTHO05D004589 2.1e-165 587.4 806 64.0
BcaB03g12811 Brassica carinata HOM05D003722 ORTHO05D004589 2.7e-165 587.0 805 63.9
SEGI_30451 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 1.0e-164 585.1 902 62.0
SGA_v2.0_scaffold169G38713 Striga asiatica HOM05D003722 ORTHO05D004589 7.4e-163 578.9 818 66.1
Hund19422 Selenicereus undatus HOM05D003722 ORTHO05D004589 1.8e-161 574.3 844 57.6
SEGI_01273 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 1.5e-160 571.2 826 66.1
HPP92_006154 Vanilla planifolia HOM05D003722 ORTHO05D004589 2.2e-159 567.4 814 65.4
unitig_748.g8237 Utricularia gibba HOM05D003722 ORTHO05D004589 9.4e-158 562.0 821 68.3
A08p17750 Brassica napus HOM05D003722 ORTHO05D004589 1.4e-153 548.1 903 57.5
BraA08t33725Z Brassica rapa HOM05D003722 ORTHO05D004589 3.1e-153 547.0 903 57.7
BolC3t20974H Brassica oleracea HOM05D003722 ORTHO05D004589 4.1e-153 546.6 907 57.9
Cpa.g.sc126.25 Carica papaya HOM05D003722 ORTHO05D004589 2.5e-150 537.3 689 77.2
A08p17740 Brassica napus HOM05D003722 ORTHO05D004589 5.5e-150 536.2 805 61.9
Gohir.A06G081600 Gossypium hirsutum HOM05D003722 ORTHO05D004589 2.1e-149 534.3 689 69.7
TWI39G1239 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 9.7e-147 525.4 740 63.2
C03p86800 Brassica napus HOM05D003722 ORTHO05D004589 8.2e-146 522.3 907 56.9
CDE07G1686 Ceratophyllum demersum HOM05D003722 ORTHO05D004589 4.4e-139 500.0 740 62.2
unitig_4.g30332 Utricularia gibba HOM05D003722 ORTHO05D004589 1.1e-134 485.3 801 50.4
Pp3c5_23900 Physcomitrium patens HOM05D003722 ORTHO05D004589 6.1e-133 479.6 991 49.3
Mapoly0202s0013 Marchantia polymorpha HOM05D003722 ORTHO05D004589 1.0e-132 478.8 913 52.6
Pp3c12_17410 Physcomitrium patens HOM05D003722 ORTHO05D004589 1.4e-124 451.8 963 45.2
SMO238G0031 Selaginella moellendorffii HOM05D003722 ORTHO05D004589 2.9e-122 444.1 804 53.1
Pp3c4_12360 Physcomitrium patens HOM05D003722 ORTHO05D004589 2.7e-120 437.6 897 55.1
MBI13_g31962_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 4.6e-120 436.8 691 60.3
Actinidia25690 Actinidia chinensis HOM05D003722 ORTHO05D004589 1.3e-119 435.3 651 73.0
Pp3c6_6070 Physcomitrium patens HOM05D003722 ORTHO05D004589 5.8e-115 419.9 1000 45.9
SalBow1G2799 Salvia bowleyana HOM05D003722 ORTHO05D004589 3.3e-102 377.5 654 72.0
CBR_g11995 Chara braunii HOM05D003722 ORTHO05D004589 1.8e-100 371.7 957 48.5
Cc08_g01170 Coffea canephora HOM05D003722 ORTHO05D004589 8.9e-100 369.4 509 64.8
Oeu022303.1 Olea europaea HOM05D003722 ORTHO05D004589 2.3e-95 354.8 295 65.8
Os10g0396400 Oryza sativa ssp. japonica HOM05D003722 ORTHO05D004589 2.1e-93 348.2 650 58.9
Zm00001eb048660 Zea mays HOM05D003722 ORTHO05D004589 2.1e-93 348.2 450 52.7
MBI13_g13882_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 2.4e-92 344.7 413 59.6
Sc09g0010110 Simmondsia chinensis HOM05D003722 ORTHO05D004589 1.5e-91 342.0 756 50.7
AagrBONN_evm.TU.Sc2ySwM_117.2463 Anthoceros agrestis HOM05D003722 ORTHO05D004589 8.4e-90 336.3 593 65.3
SHI18847 Sapria himalayana HOM05D000105 ORTHO05D000023 1.4e-81 308.9 1296 30.2
Zm00001eb223490 Zea mays HOM05D003722 ORTHO05D004589 6.6e-79 300.1 415 50.6
Cc08_g01160 Coffea canephora HOM05D003722 ORTHO05D004589 3.8e-74 284.3 272 67.6
Psat3g079480 Pisum sativum HOM05D003722 ORTHO05D004589 1.6e-72 278.9 146 91.1
Oeu028128.1 Olea europaea HOM05D003722 ORTHO05D004589 4.0e-68 264.2 311 78.8
Ah.11g044300 Amaranthus hybridus HOM05D003722 ORTHO05D004589 1.0e-47 196.4 232 50.4
Gohir.A06G081780 Gossypium hirsutum HOM05D003722 ORTHO05D004589 6.5e-42 177.2 200 51.0
Actinidia25691 Actinidia chinensis HOM05D003722 ORTHO05D004589 1.5e-38 166.0 229 43.7
Psat5g213240 Pisum sativum HOM05D003722 ORTHO05D004589 1.5e-38 166.0 86 89.5
VMungo0251G0605 Vigna mungo HOM05D003722 ORTHO05D001926 5.0e-34 151.0 119 64.7
VMungo0720G2633 Vigna mungo HOM05D003722 ORTHO05D004589 6.7e-31 140.6 87 80.5
Cpa.g.sc126.26 Carica papaya HOM05D003722 ORTHO05D004589 1.2e-24 119.8 118 56.8
ECA236G4568 Erigeron canadensis HOM05D000007 ORTHO05D000039 1.6e-19 102.8 167 43.7
SalBow1G8614 Salvia bowleyana HOM05D003722 ORTHO05D050768 2.2e-18 99.0 229 79.5
Psat5g114640 Pisum sativum HOM05D003722 ORTHO05D004589 6.8e-15 87.4 195 33.3
Mapoly0101s0054 Marchantia polymorpha HOM05D003722 ORTHO05D004589 2.2e-13 82.4 63 61.9
Sc09g0009810 Simmondsia chinensis HOM05D003722 ORTHO05D004589 6.8e-07 60.8 67 49.3


User provided reference genes

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