Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0007109 Lotus japonicus HOM05D008489 ORTHO05D010677 6.1e-115 417.5 216 100.0
Glyma.02G011500 Glycine max HOM05D008489 ORTHO05D010677 9.9e-49 197.6 218 51.8
Glyma.10G012100 Glycine max HOM05D008489 ORTHO05D010677 3.5e-46 189.1 218 51.8
VMungo0720G2810 Vigna mungo HOM05D008489 ORTHO05D010677 1.7e-45 186.8 213 48.8
Medtr1g086880 Medicago truncatula HOM05D008489 ORTHO05D010677 2.3e-45 186.4 258 45.7
Phvul.007G213600 Phaseolus vulgaris HOM05D008489 ORTHO05D010677 1.5e-44 183.7 213 48.4
Phvul.007G213550 Phaseolus vulgaris HOM05D008489 ORTHO05D010677 9.6e-44 181.0 213 47.9
Phvul.007G213500 Phaseolus vulgaris HOM05D008489 ORTHO05D010677 3.6e-43 179.1 213 46.9
Glyma.03G220400 Glycine max HOM05D008489 ORTHO05D010677 8.1e-43 177.9 213 48.4
Ca_10277_v3 Cicer arietinum L. HOM05D008489 ORTHO05D010677 1.1e-42 177.6 258 42.6
Lalb_Chr18g0046661 Lupinus albus HOM05D008489 ORTHO05D010677 3.1e-42 176.0 217 46.5
Phvul.001G213900 Phaseolus vulgaris HOM05D008489 ORTHO05D010677 6.9e-42 174.9 206 48.5
Lalb_Chr15g0078121 Lupinus albus HOM05D008489 ORTHO05D010677 2.0e-41 173.3 218 47.7
Medtr1g086890 Medicago truncatula HOM05D008489 ORTHO05D010677 2.0e-41 173.3 156 55.8
VMungo1383G1128 Vigna mungo HOM05D008489 ORTHO05D010677 2.6e-41 172.9 206 47.6
Psat0s2317g0200 Pisum sativum HOM05D008489 ORTHO05D010677 3.8e-40 169.1 180 52.8
arahy.Tifrunner.gnm1.ann1.E1ZLD6 Arachis hypogaea HOM05D008489 ORTHO05D010677 6.4e-40 168.3 224 44.2
arahy.Tifrunner.gnm1.ann1.4I2GBK Arachis hypogaea HOM05D008489 ORTHO05D010677 2.4e-39 166.4 224 44.2
arahy.Tifrunner.gnm1.ann1.27A6A2 Arachis hypogaea HOM05D008489 ORTHO05D010677 1.3e-32 144.1 229 40.6
arahy.Tifrunner.gnm1.ann1.68BGXQ Arachis hypogaea HOM05D008489 ORTHO05D010677 2.2e-32 143.3 150 48.0
Lj6g0026871 Lotus japonicus HOM05D008489 ORTHO05D010677 6.2e-27 125.2 144 43.8
Lalb_Chr18g0057851 Lupinus albus HOM05D008489 ORTHO05D010677 7.6e-25 118.2 142 44.4
Lalb_Chr15g0088681 Lupinus albus HOM05D008489 ORTHO05D010677 6.4e-24 115.2 202 37.1
Glyma.09G021800 Glycine max HOM05D008489 ORTHO05D010677 1.1e-23 114.4 168 39.9
TPR.G38587 Trifolium pratense HOM05D008489 ORTHO05D010677 1.1e-23 114.4 241 36.5
arahy.Tifrunner.gnm1.ann1.4N213E Arachis hypogaea HOM05D008489 ORTHO05D010677 3.2e-23 112.8 227 35.7
Ca_24688_v3 Cicer arietinum L. HOM05D008489 ORTHO05D010677 1.2e-22 110.9 140 42.9
Glyma.15G128200 Glycine max HOM05D008489 ORTHO05D010677 6.0e-22 108.6 206 35.0
Psat1g169160 Pisum sativum HOM05D008489 ORTHO05D010677 1.8e-21 107.1 143 42.7
Psat1g169120 Pisum sativum HOM05D008489 ORTHO05D010677 3.0e-21 106.3 169 34.9
Ca_00798_v3 Cicer arietinum L. HOM05D008489 ORTHO05D010677 8.7e-21 104.8 171 39.2
Glyma.09G021900 Glycine max HOM05D008489 ORTHO05D010677 2.5e-20 103.2 206 35.9
Glyma.15G128100 Glycine max HOM05D008489 ORTHO05D010677 4.3e-20 102.4 199 34.7
Medtr2g029460 Medicago truncatula HOM05D008489 ORTHO05D010677 7.4e-20 101.7 152 38.8
arahy.Tifrunner.gnm1.ann1.GTU453 Arachis hypogaea HOM05D008489 ORTHO05D010677 1.3e-19 100.9 143 39.9
arahy.Tifrunner.gnm1.ann1.ZRHL97 Arachis hypogaea HOM05D008489 ORTHO05D010677 2.8e-19 99.8 147 40.1
Phvul.006G130500 Phaseolus vulgaris HOM05D008489 ORTHO05D010677 8.1e-19 98.2 147 36.7
Lalb_Chr20g0119951 Lupinus albus HOM05D008489 ORTHO05D010677 3.1e-18 96.3 169 38.5
TPR.G26534 Trifolium pratense HOM05D008489 ORTHO05D010677 4.0e-18 95.9 159 35.2
VMungo0540G2195 Vigna mungo HOM05D008489 ORTHO05D010677 4.0e-18 95.9 148 35.1
TPR.G7980 Trifolium pratense HOM05D008489 ORTHO05D010677 6.9e-18 95.1 251 32.3
TPR.G7716 Trifolium pratense HOM05D008489 ORTHO05D010677 2.6e-17 93.2 124 40.3
VMungo0540G1769 Vigna mungo HOM05D008489 ORTHO05D010677 1.0e-16 91.3 157 32.5
TPR.G26536 Trifolium pratense HOM05D008489 ORTHO05D010677 2.9e-16 89.7 144 36.1
TAR362G0759 Trochodendron aralioides HOM05D005742 ORTHO05D001888 3.8e-16 89.4 146 32.9
Aa31LG1G9980 Aethionema arabicum HOM05D008182 ORTHO05D001888 8.4e-16 88.2 150 30.7
Carub.0001s0161 Capsella rubella HOM05D008182 ORTHO05D001888 1.1e-15 87.8 149 34.2
Lalb_Chr20g0119961 Lupinus albus HOM05D008489 ORTHO05D010677 1.1e-15 87.8 170 35.3
Lalb_Chr15g0088691 Lupinus albus HOM05D008489 ORTHO05D010677 2.5e-15 86.7 207 33.3
MD03G1299200 Malus domestica HOM05D005742 ORTHO05D001888 2.1e-14 83.6 152 32.2
arahy.Tifrunner.gnm1.ann1.E26X3A Arachis hypogaea HOM05D008489 ORTHO05D010677 1.8e-13 80.5 151 31.8
CARHR001860 Cardamine hirsuta HOM05D008182 ORTHO05D001888 1.8e-13 80.5 149 30.9
AL1G11880 Arabidopsis lyrata HOM05D008182 ORTHO05D001888 3.0e-13 79.7 149 31.5
TAR633G1530 Trochodendron aralioides HOM05D005742 ORTHO05D001888 3.0e-13 79.7 147 29.9
Migut.N00045 Erythranthe guttata HOM05D005742 ORTHO05D001888 1.9e-12 77.0 151 29.8
Eucgr.H01005 Eucalyptus grandis HOM05D005742 ORTHO05D001888 1.9e-12 77.0 143 33.6
arahy.Tifrunner.gnm1.ann1.A8ALBL Arachis hypogaea HOM05D008489 ORTHO05D010677 2.5e-12 76.6 214 29.4
MD16G1155100 Malus domestica HOM05D005742 ORTHO05D001888 2.5e-12 76.6 154 31.8
Sed0009222 Sechium edule HOM05D005742 ORTHO05D001888 2.5e-12 76.6 175 28.6
AT1G02550 Arabidopsis thaliana HOM05D008182 ORTHO05D001888 3.3e-12 76.3 149 30.2
arahy.Tifrunner.gnm1.ann1.MX0IDP Arachis hypogaea HOM05D008489 ORTHO05D010677 4.3e-12 75.9 216 29.6
Phvul.006G130600 Phaseolus vulgaris HOM05D008489 ORTHO05D010677 7.4e-12 75.1 142 31.7
CANSAT25G2213 Cannabis sativa HOM05D005742 ORTHO05D001888 1.3e-11 74.3 151 33.8
Sabra02G0161800 Salix brachista HOM05D008182 ORTHO05D001888 2.1e-11 73.6 149 29.5
Potri.002G194800 Populus trichocarpa HOM05D008182 ORTHO05D001888 2.8e-11 73.2 178 29.2
Potri.002G194900 Populus trichocarpa HOM05D008182 ORTHO05D001888 3.7e-11 72.8 178 28.7
QL06p011856 Quercus lobata HOM05D005742 ORTHO05D001888 6.3e-11 72.0 151 31.1
Duzib151G0239 Durio zibethinus HOM05D005742 ORTHO05D001888 1.1e-10 71.2 164 32.9
Gohir.D02G058775 Gossypium hirsutum HOM05D005742 ORTHO05D001888 1.1e-10 71.2 207 32.9
Potri.014G119200 Populus trichocarpa HOM05D008182 ORTHO05D001888 1.1e-10 71.2 149 28.9
ClCG10G011490 Citrullus lanatus HOM05D005742 ORTHO05D001888 1.4e-10 70.9 190 27.4
Thecc.04G299300 Theobroma cacao HOM05D005742 ORTHO05D001888 1.4e-10 70.9 155 30.3
TPR.G38686 Trifolium pratense HOM05D000274 ORTHO05D005226 1.4e-10 70.9 91 40.7
FvH4_4g19570 Fragaria vesca HOM05D005742 ORTHO05D001888 1.8e-10 70.5 149 30.2
FAN12G0951 Fragaria x ananassa HOM05D001258 ORTHO05D000158 1.8e-10 70.5 149 29.5
Gorai.005G066500 Gossypium raimondii HOM05D005742 ORTHO05D001888 1.8e-10 70.5 207 32.9
CDE07G0112 Ceratophyllum demersum HOM05D005742 ORTHO05D001888 2.4e-10 70.1 142 28.2
MELO3C017910.2 Cucumis melo HOM05D005742 ORTHO05D001888 2.4e-10 70.1 161 27.3
RcHm_v2.0_Chr4g0424831 Rosa chinensis HOM05D005742 ORTHO05D001888 3.1e-10 69.7 149 30.2
Nn3g21713 Nelumbo nucifera HOM05D005742 ORTHO05D001888 4.1e-10 69.3 184 27.7
Gorai.007G122100 Gossypium raimondii HOM05D008182 ORTHO05D001888 6.9e-10 68.6 223 26.9
MBI18_g17308_MAGBIO Magnolia biondii HOM05D005742 ORTHO05D001888 9.0e-10 68.2 142 26.1
CsaV3_4G001290 Cucumis sativus L. HOM05D005742 ORTHO05D001888 1.5e-09 67.4 158 24.7
Gohir.D11G113500 Gossypium hirsutum HOM05D008182 ORTHO05D001888 2.6e-09 66.6 219 26.0
Sabra14G0088400 Salix brachista HOM05D008182 ORTHO05D001888 3.4e-09 66.2 146 27.4
ATR1152G035 Amborella trichopoda HOM05D008070 ORTHO05D001888 4.5e-09 65.9 177 26.0
Haze_01291 Corylus avellana HOM05D005742 ORTHO05D001888 5.9e-09 65.5 145 30.3
Manes.01G228700 Manihot esculenta HOM05D008182 ORTHO05D001888 7.6e-09 65.1 184 28.3
TAR629G3049 Trochodendron aralioides HOM05D001445 ORTHO05D001261 1.0e-08 64.7 106 34.9
CDE06G2294 Ceratophyllum demersum HOM05D005742 ORTHO05D001888 1.3e-08 64.3 192 25.0
Ciclev10007183m.g Citrus clementina HOM05D005742 ORTHO05D001888 1.7e-08 63.9 147 32.7
CSS0018184 Camellia sinensis var. sinensis HOM05D005742 ORTHO05D001888 2.2e-08 63.5 171 25.7
CSS0026509 Camellia sinensis var. sinensis HOM05D005742 ORTHO05D001888 2.2e-08 63.5 171 25.7
CDE04G3015 Ceratophyllum demersum HOM05D004884 ORTHO05D005873 3.8e-08 62.8 154 24.7
Cfa015324 Carpinus fangiana HOM05D005742 ORTHO05D001888 5.0e-08 62.4 175 27.4
Gohir.A02G054001 Gossypium hirsutum HOM05D005742 ORTHO05D001888 5.0e-08 62.4 193 29.0
Glyma.15G141100 Glycine max HOM05D005742 ORTHO05D001888 6.5e-08 62.0 149 28.9
Lsat_1_v5_gn_7_11841 Lactuca sativa HOM05D001445 ORTHO05D001261 6.5e-08 62.0 109 33.9
Psat1g160600 Pisum sativum HOM05D005742 ORTHO05D001888 8.5e-08 61.6 143 29.4
AL4G46900 Arabidopsis lyrata HOM05D026554 ORTHO05D001888 1.1e-07 61.2 159 23.9
TAR629G1731 Trochodendron aralioides HOM05D008070 ORTHO05D001888 1.1e-07 61.2 144 26.4
Medtr2g029470 Medicago truncatula HOM05D008489 ORTHO05D010677 1.4e-07 60.8 153 28.1
Carub.0003s0617 Capsella rubella HOM05D005742 ORTHO05D001888 3.2e-07 59.7 182 25.3
LjContig00081g0023529 Lotus japonicus HOM05D005742 ORTHO05D001888 3.2e-07 59.7 154 27.9
Lalb_Chr12g0210341 Lupinus albus HOM05D001445 ORTHO05D001261 3.2e-07 59.7 120 35.0
Oeu003757.1 Olea europaea HOM05D005742 ORTHO05D001888 3.2e-07 59.7 155 23.9
Carub.0004s3006 Capsella rubella HOM05D026554 ORTHO05D001888 5.5e-07 58.9 158 22.8
TAR622G1131 Trochodendron aralioides HOM05D008070 ORTHO05D001888 5.5e-07 58.9 148 30.4
Atru.chr4.3013 Acer truncatum HOM05D005742 ORTHO05D001888 7.2e-07 58.5 137 30.7
CDE06G1547 Ceratophyllum demersum HOM05D004884 ORTHO05D005873 9.3e-07 58.2 157 22.3
Haze_02903 Corylus avellana HOM05D001445 ORTHO05D001261 9.3e-07 58.2 106 34.0
Phvul.006G117500 Phaseolus vulgaris HOM05D005742 ORTHO05D001888 9.3e-07 58.2 138 29.7
Potri.002G195000 Populus trichocarpa HOM05D008182 ORTHO05D001888 9.3e-07 58.2 181 26.5
Sed0025391 Sechium edule HOM05D001445 ORTHO05D001261 9.3e-07 58.2 87 37.9
CARHR081260 Cardamine hirsuta HOM05D005742 ORTHO05D001888 1.2e-06 57.8 180 26.7
HanXRQChr04g0115481 Helianthus annuus HOM05D001445 ORTHO05D001261 1.2e-06 57.8 102 33.3
QL04p026153 Quercus lobata HOM05D001445 ORTHO05D001261 1.2e-06 57.8 165 29.7
CSS0045791 Camellia sinensis var. sinensis HOM05D001445 ORTHO05D001261 1.6e-06 57.4 84 35.7
SalBow5G1724 Salvia bowleyana HOM05D001445 ORTHO05D001261 1.6e-06 57.4 79 38.0
CAN.G756.16 Capsicum annuum HOM05D001445 ORTHO05D001261 2.1e-06 57.0 99 32.3
CDE07G0552 Ceratophyllum demersum HOM05D001445 ORTHO05D003404 2.1e-06 57.0 80 32.5
Nitab4.5_0004088g0040 Nicotiana tabacum HOM05D001445 ORTHO05D001261 3.6e-06 56.2 82 32.9
Aqoxy5G00783 Aquilegia oxysepala HOM05D003556 ORTHO05D003404 4.6e-06 55.8 147 25.9
ClCG06G016040 Citrullus lanatus HOM05D001445 ORTHO05D001261 4.6e-06 55.8 94 33.0
MELO3C017187.2 Cucumis melo HOM05D001445 ORTHO05D001261 4.6e-06 55.8 94 31.9
MBI04_g03340_MAGBIO Magnolia biondii HOM05D001445 ORTHO05D001261 4.6e-06 55.8 97 30.9
unitig_22.g6961 Utricularia gibba HOM05D005742 ORTHO05D001888 4.6e-06 55.8 142 30.3
ECA236G4359 Erigeron canadensis HOM05D001445 ORTHO05D001261 6.1e-06 55.5 84 33.3
Glyma.09G036200 Glycine max HOM05D005742 ORTHO05D001888 6.1e-06 55.5 117 28.2
Cpa.g.sc52.68 Carica papaya HOM05D001445 ORTHO05D001261 7.9e-06 55.1 161 33.5
CDE06G2513 Ceratophyllum demersum HOM05D001445 ORTHO05D001261 7.9e-06 55.1 73 34.2
ClCG06G000840 Citrullus lanatus HOM05D001445 ORTHO05D001261 7.9e-06 55.1 76 36.8
Cc02_g25640 Coffea canephora HOM05D001445 ORTHO05D001261 7.9e-06 55.1 79 34.2
Duzib205G0415 Durio zibethinus HOM05D001445 ORTHO05D001261 7.9e-06 55.1 107 28.0


User provided reference genes

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